Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0000359

Physical Location & Seq

Genomic Coordinates Reverse (-)

5512579 .. 5513857

Gene Structure 1279 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1042500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGTACACGCTTTCTTCAACTTCAAGTGCATTCGTACATGCCCATCTTTTATTTTTATTATTTTTTAAAGTTTTTCTTCAAGTTACTCTGTATATTTTGGATTTGCAGGTGAAAGAAGCTACGTATACAAGGCTGTGTAGCTCTAAGAAAATATTAACAGTAAATGGAAAATTTCCTGGACCAGTTTTACGAGCTCACAAAGGTGATACAGTTTATGTTAATGTCCACAACGAAGGCAGCCACAACATCACAATTCACTGGCATGGAGTAAGGCAACCAAGGAATCCATGGTCAGATGGTCCTGAATACATCACGCAATGTCCAATTCAGCCTGGGGATAATTTCACACAAAAGATTATATTTTCAGATGAGGAGGGAACCATCTGGTGGCATGCACACAGTGACTGGTCAAGAGCCACAGTTCATGGAGCAATCATTGTCTATCCAAAACGAGGAGCTAGCTATCCATTTCCTAAACCTGATCACGAAGAAGTGCCAATAATATTAGGCCAGTGGTGGAAGAGCGATGTAATGGCGGTGTTTGAAGAATTCGTTAGAAACAGAGGAGAACCCAATGTTTCCGATGCTCACACCATAAATGGACAGCCCGGAGACCTCTATCCTTGCTCAGGTCCAGGTATATACAACTATTTTGCATCTCTCCGCAGCATGCTATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005507 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0010023 GO:0010035 GO:0010038 GO:0016491 GO:0016722 GO:0017144 GO:0018130 GO:0018958 GO:0019438 GO:0019748 GO:0042221 GO:0043167 GO:0043169 GO:0044237 GO:0044249 GO:0044550 GO:0046189 GO:0046483 GO:0046688 GO:0046872 GO:0046914 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

227

Amino Acids

25.75

Weight (kDa)

6.86

Isoelectric Point (pI)

34.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu-oxidase_3	PF07732	37 - 151	2.3e-41	Multicopper oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48100
fragaria_vesca	FvH4_1g24380 FvH4_2g05800 FvH4_5g30730
malus_domestica	MD01G1234900.v1.1 MD01G1235100.v1.1 MD01G1235200.v1.1 MD07G1307400.v1.1 MD07G1308000.v1.1 MD10G1042300.v1.1 MD10G1042400.v1.1 MD10G1042500.v1.1 MD10G1042700.v1.1
prunus_persica	Prupe.2G325200_v2.0.a1 Prupe.6G242000_v2.0.a1 Prupe.8G046800_v2.0.a1 Prupe.8G046900_v2.0.a1 Prupe.8G046900_v2.0.a1 Prupe.8G046900_v2.0.a1
pyrus_communis	pycom01g24320 pycom01g24330 pycom07g28020 pycom10g02950 pycom17g03690
rosa_chinensis	RchiOBHm_Chr1g0384031 RchiOBHm_Chr2g0120941 RchiOBHm_Chr2g0120971 RchiOBHm_Chr2g0121051 RchiOBHm_Chr2g0121181 RchiOBHm_Chr2g0121211 RchiOBHm_Chr3g0473931 RchiOBHm_Chr3g0473941 RchiOBHm_Chr6g0257941 RchiOBHm_Chr6g0284781
rosa_laevigata	RLG00000008541 RLG00000014737 RLG00000018604 RLG00000018607 RLG00000018608 RLG00000018610 RLG00000018611 RLG00000018613 RLG00000023967 RLG00000023970 RLG00000026078 RLG00000035183
rosa_multiflora	Rmu_sc0000079.1_g000043 Rmu_sc0000079.1_g000062 Rmu_sc0000079.1_g000069 Rmu_sc0000621.1_g000019 Rmu_sc0000621.1_g000025 Rmu_sc0000621.1_g000041 Rmu_sc0000652.1_g000018 Rmu_sc0002414.1_g000030 Rmu_sc0002414.1_g000033 Rmu_sc0002843.1_g000016 Rmu_sc0005137.1_g000035 Rmu_sc0005139.1_g000021
rosa_roxburghii	Rroxscaffold_2G00122530 Rroxscaffold_2G00122570 Rroxscaffold_2G00122580 Rroxscaffold_2G00122650 Rroxscaffold_4G00277080 Rroxscaffold_6G00407610 Rroxscaffold_6G00407620 Rroxscaffold_7G00209050
rosa_rugosa	Rorug01G0444300 Rorug02G0232700 Rorug02G0232700 Rorug02G0232900 Rorug03G0137100 Rorug05G0565600 Rorug05G0566500
rosa_samantha	Rh1BG427300 Rh1CG440100 Rh2CG278100 Rh2CG278200 Rh2CG278700 Rh2CG278800 Rh2CG279100 Rh2DG314200 Rh2DG314300 Rh2DG314600 Rh3AG187200 Rh3DG211700 Rh3DG211800 Rh5AG356600 Rh6BG078000 Rh6BG078700 Rh6CG073300 Rh6DG070300 Rh6DG190200 Rh6DG274700 Rh7BG365900
rosa_wichuraiana	Rw0G018400 Rw1G040270 Rw2G023160 Rw2G023170 Rw2G023190 Rw2G023200 Rw2G023220 Rw2G023230 Rw3G017140 Rw3G017150 Rw4G012840 Rw6G007580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	97
Acc36I	ACCTGC	1 cut(s)	97
AccB7I	CCANNNNNTGG	1 cut(s)	387
AccI	GTMKAC	1 cut(s)	125
AciI	CCGC	2 cut(s)	536, 664
AcsI	RAATTY	2 cut(s)	170, 548
AdeI	CACNNNGTG	1 cut(s)	401
AfaI	GTAC	2 cut(s)	5, 36
AfiI	CCNNNNNNNGG	3 cut(s)	387, 452, 629
AgsI	TTSAA	4 cut(s)	18, 24, 80, 545
AjnI	CCWGG	3 cut(s)	175, 331, 634
AleI	CACNNNNGTG	1 cut(s)	201
AluBI	AGCT	5 cut(s)	119, 141, 194, 458, 462
AluI	AGCT	5 cut(s)	119, 141, 194, 458, 462
Alw21I	GWGCWC	1 cut(s)	196
Alw26I	GTCTC	1 cut(s)	606
AlwNI	CAGNNNCTG	1 cut(s)	405
AoxI	GGCC	1 cut(s)	508
ApeKI	GCWGC	2 cut(s)	237, 666
ApoI	RAATTY	2 cut(s)	170, 548
AspS9I	GGNCC	3 cut(s)	179, 299, 632
AsuC2I	CCSGG	1 cut(s)	609
AsuHPI	GGTGA	2 cut(s)	121, 215
AsuNHI	GCTAGC	1 cut(s)	458
AvaII	GGWCC	3 cut(s)	179, 299, 632
BanII	GRGCYC	1 cut(s)	196
Bbv12I	GWGCWC	1 cut(s)	196
BbvI	GCAGC	1 cut(s)	249
BccI	CCATC	3 cut(s)	51, 290, 389
BciT130I	CCWGG	3 cut(s)	177, 333, 636
BclI	TGATCA	1 cut(s)	481
BcnI	CCSGG	1 cut(s)	609
BcoDI	GTCTC	1 cut(s)	606
BfaI	CTAG	1 cut(s)	459
BfuAI	ACCTGC	1 cut(s)	97
BisI	GCNGC	2 cut(s)	238, 667
BlsI	GCNGC	2 cut(s)	239, 668
Bme1390I	CCNGG	4 cut(s)	177, 333, 609, 636
Bme18I	GGWCC	3 cut(s)	179, 299, 632
BmgT120I	GGNCC	3 cut(s)	179, 299, 632
BmiI	GGNNCC	1 cut(s)	379
BmrFI	CCNGG	4 cut(s)	177, 333, 609, 636
BmsI	GCATC	2 cut(s)	574, 665
BmtI	GCTAGC	1 cut(s)	462
Bpu10I	CCTNAGC	1 cut(s)	628
BpuMI	CCSGG	1 cut(s)	609
BsaAI	YACGTR	1 cut(s)	123
BsaI	GGTCTC	1 cut(s)	606
BsaJI	CCNNGG	3 cut(s)	278, 287, 332
Bsc4I	CCNNNNNNNGG	3 cut(s)	387, 452, 629
Bse1I	ACTGG	4 cut(s)	182, 263, 410, 511
Bse3DI	GCAATG	1 cut(s)	323
BseBI	CCWGG	3 cut(s)	177, 333, 636
BseDI	CCNNGG	3 cut(s)	278, 287, 332
BseLI	CCNNNNNNNGG	3 cut(s)	387, 452, 629
BseMI	GCAATG	1 cut(s)	323
BseMII	CTCAG	1 cut(s)	642
BseNI	ACTGG	4 cut(s)	182, 263, 410, 511
BseRI	GAGGAG	3 cut(s)	386, 468, 579
BseXI	GCAGC	1 cut(s)	249
BshFI	GGCC	1 cut(s)	510
BsiHKAI	GWGCWC	1 cut(s)	196
BsiSI	CCGG	1 cut(s)	609
BslI	CCNNNNNNNGG	3 cut(s)	387, 452, 629
BsmAI	GTCTC	1 cut(s)	606
BsmI	GAATGC	1 cut(s)	29
BsnI	GGCC	1 cut(s)	510
Bso31I	GGTCTC	1 cut(s)	606
Bsp1286I	GDGCHC	1 cut(s)	196
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	1 cut(s)	481
Bsp19I	CCATGG	1 cut(s)	287
BspACI	CCGC	2 cut(s)	536, 664
BspANI	GGCC	1 cut(s)	510
BspCNI	CTCAG	1 cut(s)	641
BspLI	GGNNCC	1 cut(s)	379
BspMI	ACCTGC	1 cut(s)	97
BspOI	GCTAGC	1 cut(s)	462
BspQI	GCTCTTC	1 cut(s)	515
BspTNI	GGTCTC	1 cut(s)	606
BsrDI	GCAATG	1 cut(s)	323
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	4 cut(s)	182, 263, 410, 511
BssECI	CCNNGG	3 cut(s)	278, 287, 332
BssMI	GATC	1 cut(s)	481
BssNAI	GTATAC	1 cut(s)	126
BssT1I	CCWWGG	2 cut(s)	278, 287
Bst1107I	GTATAC	1 cut(s)	126
Bst2UI	CCWGG	3 cut(s)	177, 333, 636
Bst4CI	ACNGT	4 cut(s)	160, 211, 401, 421
Bst6I	CTCTTC	1 cut(s)	515
BstAUI	TGTACA	1 cut(s)	3
BstBAI	YACGTR	1 cut(s)	123
BstC8I	GCNNGC	3 cut(s)	393, 460, 671
BstDEI	CTNAG	2 cut(s)	144, 628
BstDSI	CCRYGG	1 cut(s)	287
BstENI	CCTNNNNNAGG	1 cut(s)	627
BstKTI	GATC	1 cut(s)	484
BstMAI	GTCTC	1 cut(s)	606
BstMBI	GATC	1 cut(s)	481
BstNI	CCWGG	3 cut(s)	177, 333, 636
BstNSI	RCATGY	3 cut(s)	41, 395, 673
BstSCI	CCNGG	4 cut(s)	175, 331, 607, 634
BstSNI	TACGTA	1 cut(s)	123
BstV1I	GCAGC	1 cut(s)	249
BstZ17I	GTATAC	1 cut(s)	126
BsuRI	GGCC	1 cut(s)	510
BtgI	CCRYGG	1 cut(s)	287
BtgZI	GCGATG	1 cut(s)	540
BtsIMutI	CAGTG	3 cut(s)	256, 406, 518
BveI	ACCTGC	1 cut(s)	97
Cac8I	GCNNGC	3 cut(s)	393, 460, 671
CaiI	CAGNNNCTG	1 cut(s)	405
Cfr13I	GGNCC	3 cut(s)	179, 299, 632
Csp6I	GTAC	2 cut(s)	4, 35
CviAII	CATG	6 cut(s)	38, 263, 288, 392, 425, 670
CviQI	GTAC	2 cut(s)	4, 35
DdeI	CTNAG	2 cut(s)	144, 628
DpnI	GATC	1 cut(s)	483
DpnII	GATC	1 cut(s)	481
DraI	TTTAAA	1 cut(s)	67
DraIII	CACNNNGTG	1 cut(s)	401
Eam1104I	CTCTTC	1 cut(s)	515
EarI	CTCTTC	1 cut(s)	515
Ecl136II	GAGCTC	1 cut(s)	194
Eco105I	TACGTA	1 cut(s)	123
Eco130I	CCWWGG	2 cut(s)	278, 287
Eco24I	GRGCYC	1 cut(s)	196
Eco31I	GGTCTC	1 cut(s)	606
Eco47I	GGWCC	3 cut(s)	179, 299, 632
Eco53kI	GAGCTC	1 cut(s)	194
EcoICRI	GAGCTC	1 cut(s)	194
EcoNI	CCTNNNNNAGG	1 cut(s)	627
EcoRI	GAATTC	1 cut(s)	548
EcoRII	CCWGG	3 cut(s)	175, 331, 634
EcoT14I	CCWWGG	2 cut(s)	278, 287
EcoT38I	GRGCYC	1 cut(s)	196
ErhI	CCWWGG	2 cut(s)	278, 287
FaeI	CATG	6 cut(s)	41, 266, 291, 395, 428, 673
FalI	AAGNNNNNCTT	2 cut(s)	60, 92
FatI	CATG	6 cut(s)	37, 262, 287, 391, 424, 669
FbaI	TGATCA	1 cut(s)	481
FblI	GTMKAC	1 cut(s)	125
Fnu4HI	GCNGC	2 cut(s)	238, 667
FriOI	GRGCYC	1 cut(s)	196
Fsp4HI	GCNGC	2 cut(s)	238, 667
FspBI	CTAG	1 cut(s)	459
GluI	GCNGC	2 cut(s)	238, 667
HaeIII	GGCC	1 cut(s)	510
HapII	CCGG	1 cut(s)	609
Hin1II	CATG	6 cut(s)	41, 266, 291, 395, 428, 673
HinfI	GANTC	1 cut(s)	283
HpaII	CCGG	1 cut(s)	609
HphI	GGTGA	2 cut(s)	121, 215
Hpy166II	GTNNAC	3 cut(s)	6, 126, 226
Hpy188I	TCNGA	3 cut(s)	295, 367, 583
Hpy188III	TCNNGA	3 cut(s)	302, 411, 485
Hpy8I	GTNNAC	3 cut(s)	6, 126, 226
HpyAV	CCTTC	1 cut(s)	227
HpyCH4III	ACNGT	4 cut(s)	160, 211, 401, 421
HpyCH4IV	ACGT	1 cut(s)	122
HpyCH4V	TGCA	4 cut(s)	29, 106, 395, 656
HpyF3I	CTNAG	2 cut(s)	144, 628
HpySE526I	ACGT	1 cut(s)	122
Hsp92II	CATG	6 cut(s)	41, 266, 291, 395, 428, 673
Ksp22I	TGATCA	1 cut(s)	481
Kzo9I	GATC	1 cut(s)	481
LguI	GCTCTTC	1 cut(s)	515
LmnI	GCTCC	2 cut(s)	428, 455
Lsp1109I	GCAGC	1 cut(s)	249
LweI	GCATC	2 cut(s)	574, 665
MaeI	CTAG	1 cut(s)	459
MaeII	ACGT	1 cut(s)	122
MaeIII	GTNAC	2 cut(s)	82, 401
MalI	GATC	1 cut(s)	483
MboI	GATC	1 cut(s)	481
MboII	GAAGA	5 cut(s)	6, 68, 500, 532, 557
MhlI	GDGCHC	1 cut(s)	196
MluCI	AATT	5 cut(s)	170, 252, 324, 340, 548
MnlI	CCTC	5 cut(s)	364, 367, 446, 557, 626
MseI	TTAA	3 cut(s)	66, 155, 219
MslI	CAYNNNNRTG	2 cut(s)	201, 261
MspI	CCGG	1 cut(s)	609
MspR9I	CCNGG	4 cut(s)	177, 333, 609, 636
Mva1269I	GAATGC	1 cut(s)	29
MvaI	CCWGG	3 cut(s)	177, 333, 636
NciI	CCSGG	1 cut(s)	609
NcoI	CCATGG	1 cut(s)	287
NdeII	GATC	1 cut(s)	481
NheI	GCTAGC	1 cut(s)	458
NlaIII	CATG	6 cut(s)	41, 266, 291, 395, 428, 673
NlaIV	GGNNCC	1 cut(s)	379
NmuCI	GTSAC	1 cut(s)	401
NspI	RCATGY	3 cut(s)	41, 395, 673
OliI	CACNNNNGTG	1 cut(s)	201
PaeI	GCATGC	2 cut(s)	395, 673
PaqCI	CACCTGC	1 cut(s)	97
PciSI	GCTCTTC	1 cut(s)	515
PctI	GAATGC	1 cut(s)	29
PfeI	GAWTC	1 cut(s)	283
PflMI	CCANNNNNTGG	1 cut(s)	387
PfoI	TCCNGGA	1 cut(s)	175
PkrI	GCNGC	2 cut(s)	239, 668
Ppu21I	YACGTR	1 cut(s)	123
Psp124BI	GAGCTC	1 cut(s)	196
Psp6I	CCWGG	3 cut(s)	175, 331, 634
PspGI	CCWGG	3 cut(s)	175, 331, 634
PspN4I	GGNNCC	1 cut(s)	379
PspPI	GGNCC	3 cut(s)	179, 299, 632
PstNI	CAGNNNCTG	1 cut(s)	405
RsaI	GTAC	2 cut(s)	5, 36
RsaNI	GTAC	2 cut(s)	4, 35
RseI	CAYNNNNRTG	2 cut(s)	201, 261
SacI	GAGCTC	1 cut(s)	196
SapI	GCTCTTC	1 cut(s)	515
SaqAI	TTAA	3 cut(s)	66, 155, 219
SatI	GCNGC	2 cut(s)	238, 667
Sau3AI	GATC	1 cut(s)	481
Sau96I	GGNCC	3 cut(s)	179, 299, 632
ScrFI	CCNGG	4 cut(s)	177, 333, 609, 636
SduI	GDGCHC	1 cut(s)	196
SfaNI	GCATC	2 cut(s)	574, 665
SinI	GGWCC	3 cut(s)	179, 299, 632
SmiMI	CAYNNNNRTG	2 cut(s)	201, 261
SnaBI	TACGTA	1 cut(s)	123
SphI	GCATGC	2 cut(s)	395, 673
Sse9I	AATT	5 cut(s)	170, 252, 324, 340, 548
SsiI	CCGC	2 cut(s)	536, 664
SspI	AATATT	2 cut(s)	153, 504
SspMI	CTAG	1 cut(s)	459
SstI	GAGCTC	1 cut(s)	196
StyD4I	CCNGG	4 cut(s)	175, 331, 607, 634
StyI	CCWWGG	2 cut(s)	278, 287
TaaI	ACNGT	4 cut(s)	160, 211, 401, 421
TaiI	ACGT	1 cut(s)	125
TasI	AATT	5 cut(s)	170, 252, 324, 340, 548
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	1 cut(s)	283
Tru1I	TTAA	3 cut(s)	66, 155, 219
Tru9I	TTAA	3 cut(s)	66, 155, 219
TscAI	CASTG	3 cut(s)	263, 406, 518
TseFI	GTSAC	1 cut(s)	401
TseI	GCWGC	2 cut(s)	237, 666
Tsp45I	GTSAC	1 cut(s)	401
TspDTI	ATGAA	1 cut(s)	413
TspRI	CASTG	3 cut(s)	263, 406, 518
Van91I	CCANNNNNTGG	1 cut(s)	387
VpaK11BI	GGWCC	3 cut(s)	179, 299, 632
XagI	CCTNNNNNAGG	1 cut(s)	627
XapI	RAATTY	2 cut(s)	170, 548
XceI	RCATGY	3 cut(s)	41, 395, 673
XcmI	CCANNNNNNNNNTGG	1 cut(s)	285
XmiI	GTMKAC	1 cut(s)	125
XspI	CTAG	1 cut(s)	459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.