Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0003813

Physical Location & Seq

Genomic Coordinates Forward (+)

26119095 .. 26124253

Gene Structure 5159 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG268800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGTCAGAGCAGAGATCCGGGTTAAGAATCCGAGATGCCAGCCCGGACTCGGTTATTTACACACTCGAGTCCAGCCTCTTCTCCTCTTCCGCTTCCGCCAGCGTTGACCGCTGCTCCTTCGCCTCCGAAGCCTTTGACCACAACTCCACCGCCTCCGAGATCTCTCCGAACTCGGCGGCGCACCGTCACCAGGTTGAAGAGAGCTCCAGTGGTCCGGATCGCGATCCAGATCCGAAGACGAGCCCCGCTTTACACATCACCAGCCACCACCACGGTCGTCGATCCAGAAAAGGAGAAAAGGCCAAAGTTCCAAAGCAAGACAGCGACGCCGACTTGGTTCTTGATTCAGCACGAAGCTCTTTCTCTCTCGCCTTGAAAGAATGCCAGGACCGTCGATCTAGATCTGAAGCTCTGTCCAAGAAGCTAGACAGGCCGAGACCCGCTTCTTTGGATTTGAACAATGTCACCGCCTCGTCTCCGAGATTGGGGACCTTAAAGAAGAGCTCAACGGCGTCTCGCAAGTCTGGAACCTTCCCAAGTCCCGGAACACCTACCTACCGGCATACTAGTCTTGGAGTGCAGAAGGGTTGGAGCTCGGAGCGAGTTCCGGCCAATGCTAATTTGGGGGGCAGGAAGAATACAACTGCTGCTGCTATGTTGCCATTCAACAATGGGAGGACGTTGCCGTCGAAATGGGAAGATGCAGAGAGGTGGATTTTCAGTCCGGTTCAGGGGGATGACGGAGATAGGCCAAGGTTAAGATTGCTCACAGGACCAATATTGCCATGTCTTGCTGTTCTTCTCTTCTTATCTGAACTTGCACACTGTTCTTTATCTCCTCCACTCATCCACACTGTTTCCAAGCAGAATGAAAATCACAGGGAGATGAGAGCCAATTTTTTGTCAGTCAATACTTGTACTGATAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Remorin_C

Protein Analysis

309

Amino Acids

33.68

Weight (kDa)

9.39

Isoelectric Point (pI)

64.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003813)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45207 AT1G45207
fragaria_vesca	FvH4_2g34300 FvH4_2g34300 FvH4_2g34300 FvH4_2g34300 FvH4_2g34300
malus_domestica	MD00G1220400.v1.1 MD08G1098900.v1.1 MD15G1081400.v1.1
prunus_persica	Prupe.1G434200_v2.0.a1 Prupe.1G434200_v2.0.a1
pyrus_communis	pycom08g08060 pycom15g07610
rosa_chinensis	RchiOBHm_Chr6g0308061
rosa_laevigata	RLG00000010671
rosa_multiflora	Rmu_sc0000765.1_g000041 Rmu_sc0002624.1_g000004
rosa_roxburghii	Rroxscaffold_7G00160610
rosa_rugosa	Rorug01G0143000.1 Rorug01G0143100.1 Rorug05G0563400 Rorug05G0565600 Rorug06G0100400.1 Rorug06G0363500 Rorug06G0363500 Rorug07G0183100
rosa_samantha	Rh1CG259500 Rh3BG268800 Rh6AG472400 Rh6BG483500 Rh6CG488400
rosa_wichuraiana	Rw0G008810 Rw6G041230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	685
AccII	CGCG	1 cut(s)	222
AccIII	TCCGGA	1 cut(s)	214
AciI	CCGC	8 cut(s)	90, 96, 109, 150, 176, 246, 441, 468
AclWI	GGATC	5 cut(s)	9, 218, 224, 225, 276
AcoI	YGGCCR	1 cut(s)	609
AcuI	CTGAAG	1 cut(s)	426
AcyI	GRCGYC	2 cut(s)	327, 512
AfaI	GTAC	1 cut(s)	919
AfiI	CCNNNNNNNGG	5 cut(s)	49, 190, 485, 542, 731
AgsI	TTSAA	4 cut(s)	197, 376, 457, 667
AhlI	ACTAGT	1 cut(s)	566
AjnI	CCWGG	2 cut(s)	189, 384
AluBI	AGCT	7 cut(s)	204, 357, 410, 424, 504, 594, 927
AluI	AGCT	7 cut(s)	204, 357, 410, 424, 504, 594, 927
Alw21I	GWGCWC	3 cut(s)	206, 506, 596
Alw26I	GTCTC	3 cut(s)	430, 480, 519
AlwI	GGATC	5 cut(s)	9, 218, 224, 225, 276
Ama87I	CYCGRG	1 cut(s)	65
Aor13HI	TCCGGA	1 cut(s)	214
AoxI	GGCC	4 cut(s)	300, 431, 609, 749
ApeKI	GCWGC	3 cut(s)	111, 647, 650
AspLEI	GCGC	1 cut(s)	181
AspS9I	GGNCC	4 cut(s)	212, 388, 489, 773
AsuC2I	CCSGG	3 cut(s)	19, 44, 543
AsuHPI	GGTGA	3 cut(s)	179, 250, 457
AvaI	CYCGRG	1 cut(s)	65
AvaII	GGWCC	4 cut(s)	212, 388, 489, 773
BanII	GRGCYC	4 cut(s)	206, 245, 506, 596
BbsI	GAAGAC	1 cut(s)	242
Bbv12I	GWGCWC	3 cut(s)	206, 506, 596
BbvI	GCAGC	3 cut(s)	98, 634, 637
BceAI	ACGGC	2 cut(s)	525, 670
BciT130I	CCWGG	2 cut(s)	191, 386
BcnI	CCSGG	3 cut(s)	19, 44, 543
BcoDI	GTCTC	3 cut(s)	430, 480, 519
BcuI	ACTAGT	1 cut(s)	566
BfaI	CTAG	4 cut(s)	399, 425, 567, 928
BglII	AGATCT	2 cut(s)	159, 401
BisI	GCNGC	4 cut(s)	112, 177, 648, 651
BlsI	GCNGC	4 cut(s)	113, 178, 649, 652
Bme1390I	CCNGG	5 cut(s)	19, 44, 191, 386, 543
Bme18I	GGWCC	4 cut(s)	212, 388, 489, 773
BmeT110I	CYCGRG	1 cut(s)	65
BmgT120I	GGNCC	4 cut(s)	212, 388, 489, 773
BmiI	GGNNCC	2 cut(s)	490, 529
BmrFI	CCNGG	5 cut(s)	19, 44, 191, 386, 543
BmsI	GCATC	2 cut(s)	25, 691
BpiI	GAAGAC	1 cut(s)	242
BpmI	CTGGAG	1 cut(s)	190
BpuMI	CCSGG	3 cut(s)	19, 44, 543
BsaBI	GATNNNNATC	3 cut(s)	222, 228, 400
BsaHI	GRCGYC	2 cut(s)	327, 512
BsaI	GGTCTC	1 cut(s)	430
BsaJI	CCNNGG	2 cut(s)	271, 752
BsaWI	WCCGGW	2 cut(s)	214, 724
BsaXI	ACNNNNNCTCC	4 cut(s)	98, 128, 128, 158
Bsc4I	CCNNNNNNNGG	5 cut(s)	49, 190, 485, 542, 731
Bse118I	RCCGGY	1 cut(s)	558
Bse1I	ACTGG	1 cut(s)	207
Bse8I	GATNNNNATC	3 cut(s)	222, 228, 400
BseAI	TCCGGA	1 cut(s)	214
BseBI	CCWGG	2 cut(s)	191, 386
BseDI	CCNNGG	2 cut(s)	271, 752
BseGI	GGATG	2 cut(s)	742, 846
BseJI	GATNNNNATC	3 cut(s)	222, 228, 400
BseLI	CCNNNNNNNGG	5 cut(s)	49, 190, 485, 542, 731
BseNI	ACTGG	1 cut(s)	207
BseRI	GAGGAG	2 cut(s)	73, 828
BseXI	GCAGC	3 cut(s)	98, 634, 637
BsgI	GTGCAG	1 cut(s)	599
Bsh1236I	CGCG	1 cut(s)	222
Bsh1285I	CGRYCG	1 cut(s)	277
BshFI	GGCC	4 cut(s)	302, 433, 611, 751
BsiEI	CGRYCG	1 cut(s)	277
BsiHKAI	GWGCWC	3 cut(s)	206, 506, 596
BsiHKCI	CYCGRG	1 cut(s)	65
BsiSI	CCGG	7 cut(s)	18, 44, 215, 543, 559, 608, 725
BslFI	GGGAC	2 cut(s)	502, 525
BslI	CCNNNNNNNGG	5 cut(s)	49, 190, 485, 542, 731
BsmAI	GTCTC	3 cut(s)	430, 480, 519
BsmBI	CGTCTC	2 cut(s)	480, 519
BsmFI	GGGAC	2 cut(s)	502, 525
BsmI	GAATGC	1 cut(s)	386
BsnI	GGCC	4 cut(s)	302, 433, 611, 751
Bso31I	GGTCTC	1 cut(s)	430
BsoBI	CYCGRG	1 cut(s)	65
Bsp1286I	GDGCHC	4 cut(s)	206, 245, 506, 596
Bsp13I	TCCGGA	1 cut(s)	214
Bsp143I	GATC	8 cut(s)	14, 159, 217, 223, 229, 281, 395, 401
Bsp68I	TCGCGA	1 cut(s)	222
BspACI	CCGC	8 cut(s)	90, 96, 109, 150, 176, 246, 441, 468
BspANI	GGCC	4 cut(s)	302, 433, 611, 751
BspEI	TCCGGA	1 cut(s)	214
BspFNI	CGCG	1 cut(s)	222
BspLI	GGNNCC	2 cut(s)	490, 529
BspPI	GGATC	5 cut(s)	9, 218, 224, 225, 276
BspQI	GCTCTTC	1 cut(s)	494
BspTNI	GGTCTC	1 cut(s)	430
BsrFI	RCCGGY	1 cut(s)	558
BsrI	ACTGG	1 cut(s)	207
BssAI	RCCGGY	1 cut(s)	558
BssECI	CCNNGG	2 cut(s)	271, 752
BssMI	GATC	8 cut(s)	14, 159, 217, 223, 229, 281, 395, 401
BssNI	GRCGYC	2 cut(s)	327, 512
BssT1I	CCWWGG	1 cut(s)	752
Bst2UI	CCWGG	2 cut(s)	191, 386
Bst4CI	ACNGT	5 cut(s)	185, 275, 392, 827, 856
Bst6I	CTCTTC	5 cut(s)	83, 91, 192, 494, 809
BstACI	GRCGYC	2 cut(s)	327, 512
BstC8I	GCNNGC	2 cut(s)	40, 100
BstDSI	CCRYGG	1 cut(s)	271
BstF5I	GGATG	2 cut(s)	742, 846
BstFNI	CGCG	1 cut(s)	222
BstHHI	GCGC	1 cut(s)	181
BstKTI	GATC	8 cut(s)	17, 162, 220, 226, 232, 284, 398, 404
BstMAI	GTCTC	3 cut(s)	430, 480, 519
BstMBI	GATC	8 cut(s)	14, 159, 217, 223, 229, 281, 395, 401
BstMCI	CGRYCG	1 cut(s)	277
BstMWI	GCNNNNNNNGC	3 cut(s)	108, 128, 430
BstNI	CCWGG	2 cut(s)	191, 386
BstSCI	CCNGG	5 cut(s)	17, 42, 189, 384, 541
BstUI	CGCG	1 cut(s)	222
BstV1I	GCAGC	3 cut(s)	98, 634, 637
BstV2I	GAAGAC	1 cut(s)	242
BstX2I	RGATCY	4 cut(s)	14, 159, 229, 401
BstYI	RGATCY	4 cut(s)	14, 159, 229, 401
BsuRI	GGCC	4 cut(s)	302, 433, 611, 751
BtgI	CCRYGG	1 cut(s)	271
BtsCI	GGATG	2 cut(s)	742, 846
BtsIMutI	CAGTG	3 cut(s)	214, 823, 852
BtuMI	TCGCGA	1 cut(s)	222
Cac8I	GCNNGC	2 cut(s)	40, 100
CfoI	GCGC	1 cut(s)	181
Cfr10I	RCCGGY	1 cut(s)	558
Cfr13I	GGNCC	4 cut(s)	212, 388, 489, 773
CseI	GACGC	2 cut(s)	335, 501
CsiI	ACCWGGT	1 cut(s)	189
Csp6I	GTAC	1 cut(s)	918
CviAII	CATG	1 cut(s)	786
CviQI	GTAC	1 cut(s)	918
DpnI	GATC	8 cut(s)	16, 161, 219, 225, 231, 283, 397, 403
DpnII	GATC	8 cut(s)	14, 159, 217, 223, 229, 281, 395, 401
DrdI	GACNNNNNNGTC	1 cut(s)	685
DseDI	GACNNNNNNGTC	1 cut(s)	685
EaeI	YGGCCR	1 cut(s)	609
Eam1104I	CTCTTC	5 cut(s)	83, 91, 192, 494, 809
EarI	CTCTTC	5 cut(s)	83, 91, 192, 494, 809
EciI	GGCGGA	1 cut(s)	85
Ecl136II	GAGCTC	3 cut(s)	204, 504, 594
Eco130I	CCWWGG	1 cut(s)	752
Eco24I	GRGCYC	4 cut(s)	206, 245, 506, 596
Eco31I	GGTCTC	1 cut(s)	430
Eco47I	GGWCC	4 cut(s)	212, 388, 489, 773
Eco53kI	GAGCTC	3 cut(s)	204, 504, 594
Eco57I	CTGAAG	1 cut(s)	426
Eco88I	CYCGRG	1 cut(s)	65
EcoICRI	GAGCTC	3 cut(s)	204, 504, 594
EcoO109I	RGGNCCY	1 cut(s)	489
EcoRII	CCWGG	2 cut(s)	189, 384
EcoT14I	CCWWGG	1 cut(s)	752
EcoT38I	GRGCYC	4 cut(s)	206, 245, 506, 596
ErhI	CCWWGG	1 cut(s)	752
Esp3I	CGTCTC	2 cut(s)	480, 519
FaeI	CATG	1 cut(s)	789
FaiI	YATR	3 cut(s)	564, 656, 787
FaqI	GGGAC	2 cut(s)	502, 525
FatI	CATG	1 cut(s)	785
FauI	CCCGC	2 cut(s)	253, 448
Fnu4HI	GCNGC	4 cut(s)	112, 177, 648, 651
FokI	GGATG	2 cut(s)	749, 833
FriOI	GRGCYC	4 cut(s)	206, 245, 506, 596
Fsp4HI	GCNGC	4 cut(s)	112, 177, 648, 651
FspBI	CTAG	4 cut(s)	399, 425, 567, 928
GlaI	GCGC	1 cut(s)	180
GluI	GCNGC	4 cut(s)	112, 177, 648, 651
GsuI	CTGGAG	1 cut(s)	190
HaeIII	GGCC	4 cut(s)	302, 433, 611, 751
HapII	CCGG	7 cut(s)	18, 44, 215, 543, 559, 608, 725
HgaI	GACGC	2 cut(s)	335, 501
HhaI	GCGC	1 cut(s)	181
Hin1I	GRCGYC	2 cut(s)	327, 512
Hin1II	CATG	1 cut(s)	789
Hin6I	GCGC	1 cut(s)	179
HinP1I	GCGC	1 cut(s)	179
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HinfI	GANTC	4 cut(s)	27, 47, 68, 344
HpaII	CCGG	7 cut(s)	18, 44, 215, 543, 559, 608, 725
HphI	GGTGA	3 cut(s)	179, 250, 457
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188III	TCNNGA	7 cut(s)	215, 221, 227, 285, 341, 399, 525
Hpy8I	GTNNAC	1 cut(s)	106
Hpy99I	CGWCG	4 cut(s)	282, 329, 396, 691
HpyAV	CCTTC	3 cut(s)	127, 541, 577
HpyCH4III	ACNGT	5 cut(s)	185, 275, 392, 827, 856
HpyCH4IV	ACGT	1 cut(s)	680
HpyCH4V	TGCA	3 cut(s)	580, 704, 821
HpyF10VI	GCNNNNNNNGC	3 cut(s)	108, 128, 430
HpySE526I	ACGT	1 cut(s)	680
Hsp92I	GRCGYC	2 cut(s)	327, 512
Hsp92II	CATG	1 cut(s)	789
HspAI	GCGC	1 cut(s)	179
Kpn2I	TCCGGA	1 cut(s)	214
Kzo9I	GATC	8 cut(s)	14, 159, 217, 223, 229, 281, 395, 401
LguI	GCTCTTC	1 cut(s)	494
LmnI	GCTCC	4 cut(s)	119, 209, 591, 598
Lsp1109I	GCAGC	3 cut(s)	98, 634, 637
LweI	GCATC	2 cut(s)	25, 691
MabI	ACCWGGT	1 cut(s)	189
MaeI	CTAG	4 cut(s)	399, 425, 567, 928
MaeII	ACGT	1 cut(s)	680
MaeIII	GTNAC	2 cut(s)	185, 463
MalI	GATC	8 cut(s)	16, 161, 219, 225, 231, 283, 397, 403
MboI	GATC	8 cut(s)	14, 159, 217, 223, 229, 281, 395, 401
MboII	GAAGA	9 cut(s)	70, 78, 209, 247, 511, 646, 710, 791, 796
MflI	RGATCY	4 cut(s)	14, 159, 229, 401
MhlI	GDGCHC	4 cut(s)	206, 245, 506, 596
MluCI	AATT	2 cut(s)	619, 895
MlyI	GAGTC	2 cut(s)	41, 77
MmeI	TCCRAC	1 cut(s)	569
MnlI	CCTC	8 cut(s)	86, 94, 133, 163, 481, 669, 702, 849
MroI	TCCGGA	1 cut(s)	214
MseI	TTAA	3 cut(s)	23, 494, 758
MspA1I	CMGCKG	1 cut(s)	111
MspI	CCGG	7 cut(s)	18, 44, 215, 543, 559, 608, 725
MspR9I	CCNGG	5 cut(s)	19, 44, 191, 386, 543
Mva1269I	GAATGC	1 cut(s)	386
MvaI	CCWGG	2 cut(s)	191, 386
MvnI	CGCG	1 cut(s)	222
MwoI	GCNNNNNNNGC	3 cut(s)	108, 128, 430
NciI	CCSGG	3 cut(s)	19, 44, 543
NdeII	GATC	8 cut(s)	14, 159, 217, 223, 229, 281, 395, 401
NlaIII	CATG	1 cut(s)	789
NlaIV	GGNNCC	2 cut(s)	490, 529
NmeAIII	GCCGAG	2 cut(s)	152, 459
NmuCI	GTSAC	2 cut(s)	185, 463
NruI	TCGCGA	1 cut(s)	222
PaeR7I	CTCGAG	1 cut(s)	65
PciSI	GCTCTTC	1 cut(s)	494
PcsI	WCGNNNNNNNCGW	1 cut(s)	686
PctI	GAATGC	1 cut(s)	386
PfeI	GAWTC	2 cut(s)	27, 344
PfoI	TCCNGGA	1 cut(s)	541
PkrI	GCNGC	4 cut(s)	113, 178, 649, 652
PleI	GAGTC	2 cut(s)	41, 76
PpsI	GAGTC	2 cut(s)	41, 76
PpuMI	RGGWCCY	1 cut(s)	489
Psp124BI	GAGCTC	3 cut(s)	206, 506, 596
Psp5II	RGGWCCY	1 cut(s)	489
Psp6I	CCWGG	2 cut(s)	189, 384
PspGI	CCWGG	2 cut(s)	189, 384
PspN4I	GGNNCC	2 cut(s)	490, 529
PspPI	GGNCC	4 cut(s)	212, 388, 489, 773
PspPPI	RGGWCCY	1 cut(s)	489
PspXI	VCTCGAGB	1 cut(s)	65
PsuI	RGATCY	4 cut(s)	14, 159, 229, 401
RruI	TCGCGA	1 cut(s)	222
RsaI	GTAC	1 cut(s)	919
RsaNI	GTAC	1 cut(s)	918
SacI	GAGCTC	3 cut(s)	206, 506, 596
SapI	GCTCTTC	1 cut(s)	494
SaqAI	TTAA	3 cut(s)	23, 494, 758
SatI	GCNGC	4 cut(s)	112, 177, 648, 651
Sau3AI	GATC	8 cut(s)	14, 159, 217, 223, 229, 281, 395, 401
Sau96I	GGNCC	4 cut(s)	212, 388, 489, 773
SchI	GAGTC	2 cut(s)	41, 77
ScrFI	CCNGG	5 cut(s)	19, 44, 191, 386, 543
SduI	GDGCHC	4 cut(s)	206, 245, 506, 596
SexAI	ACCWGGT	1 cut(s)	189
SfaNI	GCATC	2 cut(s)	25, 691
Sfr274I	CTCGAG	1 cut(s)	65
SinI	GGWCC	4 cut(s)	212, 388, 489, 773
SlaI	CTCGAG	1 cut(s)	65
SmlI	CTYRAG	1 cut(s)	65
SmoI	CTYRAG	1 cut(s)	65
SpeI	ACTAGT	1 cut(s)	566
Sse9I	AATT	2 cut(s)	619, 895
SsiI	CCGC	8 cut(s)	90, 96, 109, 150, 176, 246, 441, 468
SspI	AATATT	1 cut(s)	780
SspMI	CTAG	4 cut(s)	399, 425, 567, 928
SstI	GAGCTC	3 cut(s)	206, 506, 596
StyD4I	CCNGG	5 cut(s)	17, 42, 189, 384, 541
StyI	CCWWGG	1 cut(s)	752
TaaI	ACNGT	5 cut(s)	185, 275, 392, 827, 856
TaiI	ACGT	1 cut(s)	683
TaqI	TCGA	4 cut(s)	66, 280, 394, 689
TasI	AATT	2 cut(s)	619, 895
TatI	WGTACW	1 cut(s)	917
TauI	GCSGC	1 cut(s)	179
TfiI	GAWTC	2 cut(s)	27, 344
Tru1I	TTAA	3 cut(s)	23, 494, 758
Tru9I	TTAA	3 cut(s)	23, 494, 758
TscAI	CASTG	3 cut(s)	214, 830, 859
TseFI	GTSAC	2 cut(s)	185, 463
TseI	GCWGC	3 cut(s)	111, 647, 650
Tsp45I	GTSAC	2 cut(s)	185, 463
TspDTI	ATGAA	1 cut(s)	885
TspGWI	ACGGA	1 cut(s)	756
TspRI	CASTG	3 cut(s)	214, 830, 859
VpaK11BI	GGWCC	4 cut(s)	212, 388, 489, 773
XbaI	TCTAGA	1 cut(s)	398
XcmI	CCANNNNNNNNNTGG	1 cut(s)	619
XhoI	CTCGAG	1 cut(s)	65
XspI	CTAG	4 cut(s)	399, 425, 567, 928

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.