AT1G46480

Homeodomain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012231
Physical Location & Seq
Reverse (-)
17236524 .. 17238185
1662 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G46480.1

Sequence Viewer

Length: 756 bp
ATGAAGGTTCATGAGTTTTCGAATGGGTTTTCTTCATCGTGGGATCAACATGACTCGACATCATCCCTTAGCCTAAGCTGCAAACGCCTCCGTCCTCTCGCCCCTAAGCTCTCCGGCAGCCCTCCCTCCCCTCCTTCTTCTTCCTCCGGCGTCACTTCAGCCACTTTTGACCTTAAAAACTTCATTAGACCCGATCAAACCGGTCCGACAAAATTTGAACACAAACGAGACCCTCCTCATCAATTGGAGACGCACCCGGGAGGGACAAGGTGGAACCCGACTCAAGAACAGATAGGGATACTTGAGATGTTGTACAAAGGTGGAATGCGTACTCCTAATGCTCAACAGATTGAGCATATCACATTGCAACTCGGTAAGTACGGGAAAATCGAAGGGAAAAATGTGTTCTATTGGTTCCAGAACCACAAAGCCCGCGAGAGACAGAAGCAGAAGAGGAACAACCTCATCAGCCTAAGTTGCCAAAGCAGCTTCACGACCACTGGTGTCTTTAATCCGAGTGTAACTATGAAGACAAGAACATCATCGTCACTAGACATTATGAGAGAACCAATGGTGGAGAAGGAGGAGTTAGTGGAAGAGAATGAGTACAAGAGGACATGTAGGAGCTGGGGATTTGAGAACTTGGAGATAGAGAACAGGAGAAACAAAAATAGTAGTACTATGGCAACTACTTTTAATAAAATCATTGACAATGTAACCCTCGAGCTTTTTCCTCTCCATCCTGAAGGGAGATGA

Protein Analysis

251

Amino Acids

28.67

Weight (kDa)

9.34

Isoelectric Point (pI)

62.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 89 - 148 5.2e-14 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012231)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G46480 AT1G46480
fragaria_vesca FvH4_2g34030 FvH4_2g34030
malus_domestica MD08G1096300.v1.1 MD15G1079000.v1.1
prunus_persica Prupe.1G432100_v2.0.a1
pyrus_communis pycom08g07830 pycom15g07360
rosa_chinensis RchiOBHm_Chr6g0308351
rosa_laevigata RLG00000010648
rosa_multiflora Rmu_sc0005523.1_g000011
rosa_roxburghii Rroxscaffold_7G00160220
rosa_rugosa Rorug06G0366200
rosa_samantha Rh6AG475500 Rh6BG485900 Rh6CG491100 Rh6DG477400
rosa_wichuraiana Rw6G041450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 435
AciI CCGC 1 cut(s) 433
AclWI GGATC 1 cut(s) 51
AcsI RAATTY 1 cut(s) 212
AcuI CTGAAG 1 cut(s) 141
AcyI GRCGYC 1 cut(s) 150
AfaI GTAC 5 cut(s) 314, 331, 380, 608, 679
AflIII ACRYGT 1 cut(s) 617
AgeI ACCGGT 1 cut(s) 200
AgsI TTSAA 1 cut(s) 218
AluBI AGCT 5 cut(s) 78, 109, 489, 627, 727
AluI AGCT 5 cut(s) 78, 109, 489, 627, 727
Alw26I GTCTC 3 cut(s) 222, 242, 433
AlwI GGATC 1 cut(s) 51
Ama87I CYCGRG 2 cut(s) 256, 722
ApeKI GCWGC 3 cut(s) 78, 117, 486
ApoI RAATTY 1 cut(s) 212
AsiGI ACCGGT 1 cut(s) 200
AspS9I GGNCC 1 cut(s) 203
AsuC2I CCSGG 2 cut(s) 257, 258
AsuII TTCGAA 1 cut(s) 20
AvaI CYCGRG 2 cut(s) 256, 722
AvaII GGWCC 1 cut(s) 203
BbsI GAAGAC 1 cut(s) 536
BbvI GCAGC 3 cut(s) 65, 129, 498
BccI CCATC 1 cut(s) 747
BciVI GTATCC 1 cut(s) 291
BcnI CCSGG 2 cut(s) 257, 258
BcoDI GTCTC 3 cut(s) 222, 242, 433
BfaI CTAG 1 cut(s) 551
BfuI GTATCC 1 cut(s) 291
BisI GCNGC 3 cut(s) 79, 118, 487
BlsI GCNGC 3 cut(s) 80, 119, 488
BmcAI AGTACT 1 cut(s) 679
Bme1390I CCNGG 2 cut(s) 257, 258
Bme18I GGWCC 1 cut(s) 203
BmeT110I CYCGRG 2 cut(s) 256, 722
BmgT120I GGNCC 1 cut(s) 203
BmiI GGNNCC 2 cut(s) 275, 416
BmrFI CCNGG 2 cut(s) 257, 258
BpiI GAAGAC 1 cut(s) 536
Bpu10I CCTNAGC 3 cut(s) 68, 74, 105
Bpu14I TTCGAA 1 cut(s) 20
BpuEI CTTGAG 2 cut(s) 267, 323
BpuMI CCSGG 2 cut(s) 257, 258
BsaHI GRCGYC 1 cut(s) 150
BsaI GGTCTC 1 cut(s) 222
BsaJI CCNNGG 1 cut(s) 256
BsaWI WCCGGW 1 cut(s) 200
Bse118I RCCGGY 1 cut(s) 200
Bse1I ACTGG 1 cut(s) 505
Bse3DI GCAATG 1 cut(s) 362
BseDI CCNNGG 1 cut(s) 256
BseGI GGATG 2 cut(s) 62, 739
BseMI GCAATG 1 cut(s) 362
BseNI ACTGG 1 cut(s) 505
BseRI GAGGAG 2 cut(s) 225, 599
BseXI GCAGC 3 cut(s) 65, 129, 498
BseYI CCCAGC 1 cut(s) 627
Bsh1236I CGCG 1 cut(s) 435
BshTI ACCGGT 1 cut(s) 200
BsiHKCI CYCGRG 2 cut(s) 256, 722
BsiSI CCGG 4 cut(s) 114, 147, 201, 257
BslFI GGGAC 1 cut(s) 277
BsmAI GTCTC 3 cut(s) 222, 242, 433
BsmBI CGTCTC 1 cut(s) 242
BsmFI GGGAC 1 cut(s) 277
BsmI GAATGC 1 cut(s) 330
Bso31I GGTCTC 1 cut(s) 222
BsoBI CYCGRG 2 cut(s) 256, 722
Bsp119I TTCGAA 1 cut(s) 20
Bsp1407I TGTACA 1 cut(s) 312
Bsp143I GATC 2 cut(s) 43, 193
BspACI CCGC 1 cut(s) 433
BspFNI CGCG 1 cut(s) 435
BspHI TCATGA 1 cut(s) 10
BspLI GGNNCC 2 cut(s) 275, 416
BspPI GGATC 1 cut(s) 51
BspT104I TTCGAA 1 cut(s) 20
BspTNI GGTCTC 1 cut(s) 222
BsrDI GCAATG 1 cut(s) 362
BsrFI RCCGGY 1 cut(s) 200
BsrGI TGTACA 1 cut(s) 312
BsrI ACTGG 1 cut(s) 505
BssAI RCCGGY 1 cut(s) 200
BssECI CCNNGG 1 cut(s) 256
BssMI GATC 2 cut(s) 43, 193
BssNI GRCGYC 1 cut(s) 150
Bst6I CTCTTC 2 cut(s) 446, 591
BstACI GRCGYC 1 cut(s) 150
BstAUI TGTACA 1 cut(s) 312
BstBI TTCGAA 1 cut(s) 20
BstC8I GCNNGC 1 cut(s) 433
BstDEI CTNAG 4 cut(s) 68, 74, 105, 473
BstF5I GGATG 2 cut(s) 62, 739
BstFNI CGCG 1 cut(s) 435
BstKTI GATC 2 cut(s) 46, 196
BstMAI GTCTC 3 cut(s) 222, 242, 433
BstMBI GATC 2 cut(s) 43, 193
BstMWI GCNNNNNNNGC 4 cut(s) 78, 84, 477, 486
BstNSI RCATGY 1 cut(s) 621
BstSCI CCNGG 2 cut(s) 255, 256
BstUI CGCG 1 cut(s) 435
BstV1I GCAGC 3 cut(s) 65, 129, 498
BstV2I GAAGAC 1 cut(s) 536
BsuI GTATCC 1 cut(s) 291
BtsCI GGATG 2 cut(s) 62, 739
BtsIMutI CAGTG 1 cut(s) 498
Cac8I GCNNGC 1 cut(s) 433
CciI TCATGA 1 cut(s) 10
Cfr10I RCCGGY 1 cut(s) 200
Cfr13I GGNCC 1 cut(s) 203
Cfr9I CCCGGG 1 cut(s) 256
CpoI CGGWCCG 1 cut(s) 203
CseI GACGC 2 cut(s) 139, 259
Csp6I GTAC 5 cut(s) 313, 330, 379, 607, 678
CspAI ACCGGT 1 cut(s) 200
CspI CGGWCCG 1 cut(s) 203
CviAII CATG 3 cut(s) 11, 50, 618
CviQI GTAC 5 cut(s) 313, 330, 379, 607, 678
DdeI CTNAG 4 cut(s) 68, 74, 105, 473
DpnI GATC 2 cut(s) 45, 195
DpnII GATC 2 cut(s) 43, 193
Eam1104I CTCTTC 2 cut(s) 446, 591
EarI CTCTTC 2 cut(s) 446, 591
Eco31I GGTCTC 1 cut(s) 222
Eco47I GGWCC 1 cut(s) 203
Eco57I CTGAAG 1 cut(s) 141
Eco88I CYCGRG 2 cut(s) 256, 722
Esp3I CGTCTC 1 cut(s) 242
FaeI CATG 3 cut(s) 14, 53, 621
FaiI YATR 7 cut(s) 12, 51, 357, 527, 560, 619, 683
FaqI GGGAC 1 cut(s) 277
FatI CATG 3 cut(s) 10, 49, 617
FauI CCCGC 1 cut(s) 440
Fnu4HI GCNGC 3 cut(s) 79, 118, 487
FokI GGATG 2 cut(s) 49, 726
Fsp4HI GCNGC 3 cut(s) 79, 118, 487
FspBI CTAG 1 cut(s) 551
GluI GCNGC 3 cut(s) 79, 118, 487
GsaI CCCAGC 1 cut(s) 631
HapII CCGG 4 cut(s) 114, 147, 201, 257
HgaI GACGC 2 cut(s) 139, 259
Hin1I GRCGYC 1 cut(s) 150
Hin1II CATG 3 cut(s) 14, 53, 621
HinfI GANTC 2 cut(s) 53, 280
HpaII CCGG 4 cut(s) 114, 147, 201, 257
Hpy188I TCNGA 2 cut(s) 207, 516
Hpy188III TCNNGA 5 cut(s) 11, 284, 418, 493, 743
HpyAV CCTTC 4 cut(s) 144, 386, 574, 740
HpyCH4V TGCA 2 cut(s) 81, 367
HpyF10VI GCNNNNNNNGC 4 cut(s) 78, 84, 477, 486
HpyF3I CTNAG 4 cut(s) 68, 74, 105, 473
Hsp92I GRCGYC 1 cut(s) 150
Hsp92II CATG 3 cut(s) 14, 53, 621
Kzo9I GATC 2 cut(s) 43, 193
LmnI GCTCC 1 cut(s) 624
LpnPI CCDG 8 cut(s) 127, 160, 214, 270, 431, 486, 613, 643
Lsp1109I GCAGC 3 cut(s) 65, 129, 498
MaeI CTAG 1 cut(s) 551
MaeIII GTNAC 4 cut(s) 151, 520, 546, 715
MalI GATC 2 cut(s) 45, 195
MboI GATC 2 cut(s) 43, 193
MboII GAAGA 6 cut(s) 24, 129, 132, 463, 541, 608
MfeI CAATTG 1 cut(s) 242
MluCI AATT 2 cut(s) 212, 242
MlyI GAGTC 2 cut(s) 47, 274
MmeI TCCRAC 1 cut(s) 230
MseI TTAA 3 cut(s) 174, 510, 696
MspI CCGG 4 cut(s) 114, 147, 201, 257
MspR9I CCNGG 2 cut(s) 257, 258
MunI CAATTG 1 cut(s) 242
Mva1269I GAATGC 1 cut(s) 330
MvnI CGCG 1 cut(s) 435
MwoI GCNNNNNNNGC 4 cut(s) 78, 84, 477, 486
NciI CCSGG 2 cut(s) 257, 258
NdeII GATC 2 cut(s) 43, 193
NlaIII CATG 3 cut(s) 14, 53, 621
NlaIV GGNNCC 2 cut(s) 275, 416
NmuCI GTSAC 2 cut(s) 151, 546
NspI RCATGY 1 cut(s) 621
NspV TTCGAA 1 cut(s) 20
PaeR7I CTCGAG 1 cut(s) 722
PagI TCATGA 1 cut(s) 10
PciI ACATGT 1 cut(s) 617
PcsI WCGNNNNNNNCGW 1 cut(s) 387
PctI GAATGC 1 cut(s) 330
PinAI ACCGGT 1 cut(s) 200
PkrI GCNGC 3 cut(s) 80, 119, 488
PleI GAGTC 2 cut(s) 47, 274
PpsI GAGTC 2 cut(s) 47, 274
PscI ACATGT 1 cut(s) 617
PspFI CCCAGC 1 cut(s) 627
PspN4I GGNNCC 2 cut(s) 275, 416
PspPI GGNCC 1 cut(s) 203
PspXI VCTCGAGB 1 cut(s) 722
RsaI GTAC 5 cut(s) 314, 331, 380, 608, 679
RsaNI GTAC 5 cut(s) 313, 330, 379, 607, 678
Rsr2I CGGWCCG 1 cut(s) 203
RsrII CGGWCCG 1 cut(s) 203
SaqAI TTAA 3 cut(s) 174, 510, 696
SatI GCNGC 3 cut(s) 79, 118, 487
Sau3AI GATC 2 cut(s) 43, 193
Sau96I GGNCC 1 cut(s) 203
ScaI AGTACT 1 cut(s) 679
SchI GAGTC 2 cut(s) 47, 274
ScrFI CCNGG 2 cut(s) 257, 258
Sfr274I CTCGAG 1 cut(s) 722
SfuI TTCGAA 1 cut(s) 20
SinI GGWCC 1 cut(s) 203
SlaI CTCGAG 1 cut(s) 722
SmaI CCCGGG 1 cut(s) 258
SmlI CTYRAG 3 cut(s) 282, 302, 722
SmoI CTYRAG 3 cut(s) 282, 302, 722
Sse9I AATT 2 cut(s) 212, 242
SsiI CCGC 1 cut(s) 433
SspMI CTAG 1 cut(s) 551
StyD4I CCNGG 2 cut(s) 255, 256
TaqI TCGA 4 cut(s) 20, 56, 390, 723
TasI AATT 2 cut(s) 212, 242
TatI WGTACW 3 cut(s) 312, 606, 677
Tru1I TTAA 3 cut(s) 174, 510, 696
Tru9I TTAA 3 cut(s) 174, 510, 696
TscAI CASTG 1 cut(s) 505
TseFI GTSAC 2 cut(s) 151, 546
TseI GCWGC 3 cut(s) 78, 117, 486
Tsp45I GTSAC 2 cut(s) 151, 546
TspDTI ATGAA 4 cut(s) 17, 24, 172, 542
TspGWI ACGGA 1 cut(s) 80
TspMI CCCGGG 1 cut(s) 256
TspRI CASTG 1 cut(s) 505
VpaK11BI GGWCC 1 cut(s) 203
XapI RAATTY 1 cut(s) 212
XceI RCATGY 1 cut(s) 621
XhoI CTCGAG 1 cut(s) 722
XmaI CCCGGG 1 cut(s) 256
XspI CTAG 1 cut(s) 551
ZrmI AGTACT 1 cut(s) 679
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.