Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0012231

Physical Location & Seq

Genomic Coordinates Forward (+)

5402571 .. 5404208

Gene Structure 1638 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1079000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGGAATGAGCAGCATGAAGGTGCATCAGTTCGCACGTGGACTCTGGGAACACGAACCCTCCCTCACGCTTGGCTGCACCAAACGCTTACGCCCTCTTGCTCCCAGACTGGCCAACACGGCCGCCGCCTCCGACACTACTACCACCCTCGCTCCTTTCGATCTCAAGAGTTTCATCAGACCTGACAGTGGCCCCAGAAAACTTGGATCTTCTAACCAGCTTCAGGAGAAGAAAGATTCCCCTCACCCTCAGGTAGAGACGCACCCAGGAGGGACACGCTGGAACCCTACGCAAGAACAGATAGGGATACTAGAAATGTTGTATAGAGAAGGAATGCGCACTCCTAATGCACAACAAATAGAGAAAATCACGGCTCAACTTGGCAAGTACGGCAAGATCGAAGGCAAGAATGTGTTTTACTGGTTCCAGAATCACAAGGCACGCGAGAGGCAGAAGCAAAAACGCAGCAGCCTTGGCCTCAGCCACTCTCCAAGAACACCGACTCCTGTAATTACCACCCTGGGAGAAGTAGTGGTGGAAAGAGAGGAAGATAATCCGTACAAGAGAAAGTGTAGGAGCTGGGAATTTGATTGCTTGGTAGAAGGTGATCATAGTAGTAGTACAAGTAGTGTAGTATGTAAGCTCGACAACGACGACGCCGTTGAGGGAGGTAGAACTCTGGAGCTCTTTCCATTACATCCAGAAGGAAGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010065 GO:0010067 GO:0010087 GO:0010154 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051301 GO:0051716 GO:0061458 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

239

Amino Acids

26.88

Weight (kDa)

9.17

Isoelectric Point (pI)

54.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	92 - 151	6.7e-15	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012231)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G46480 AT1G46480
fragaria_vesca	FvH4_2g34030 FvH4_2g34030
malus_domestica	MD08G1096300.v1.1 MD15G1079000.v1.1
prunus_persica	Prupe.1G432100_v2.0.a1
pyrus_communis	pycom08g07830 pycom15g07360
rosa_chinensis	RchiOBHm_Chr6g0308351
rosa_laevigata	RLG00000010648
rosa_multiflora	Rmu_sc0005523.1_g000011
rosa_roxburghii	Rroxscaffold_7G00160220
rosa_rugosa	Rorug06G0366200
rosa_samantha	Rh6AG475500 Rh6BG485900 Rh6CG491100 Rh6DG477400
rosa_wichuraiana	Rw6G041450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	338
AccII	CGCG	1 cut(s)	444
AciI	CCGC	2 cut(s)	123, 126
AclWI	GGATC	1 cut(s)	214
AcoI	YGGCCR	2 cut(s)	111, 120
AcsI	RAATTY	1 cut(s)	584
AcuI	CTGAAG	1 cut(s)	206
AcvI	CACGTG	1 cut(s)	38
AcyI	GRCGYC	1 cut(s)	657
AfaI	GTAC	3 cut(s)	389, 560, 622
AfiI	CCNNNNNNNGG	2 cut(s)	188, 223
AjnI	CCWGG	2 cut(s)	265, 519
AloI	GAACNNNNNNTCC	2 cut(s)	487, 519
AluBI	AGCT	4 cut(s)	220, 579, 643, 685
AluI	AGCT	4 cut(s)	220, 579, 643, 685
Alw21I	GWGCWC	1 cut(s)	687
Alw26I	GTCTC	1 cut(s)	251
AlwI	GGATC	1 cut(s)	214
AoxI	GGCC	4 cut(s)	111, 120, 190, 475
ApeKI	GCWGC	4 cut(s)	12, 75, 465, 468
ApoI	RAATTY	1 cut(s)	584
AspLEI	GCGC	1 cut(s)	339
AspS9I	GGNCC	1 cut(s)	191
AsuHPI	GGTGA	2 cut(s)	236, 617
AxyI	CCTNAGG	1 cut(s)	249
BalI	TGGCCA	1 cut(s)	113
BanII	GRGCYC	1 cut(s)	687
BbrPI	CACGTG	1 cut(s)	38
Bbv12I	GWGCWC	1 cut(s)	687
BbvCI	CCTCAGC	1 cut(s)	479
BbvI	GCAGC	4 cut(s)	24, 62, 477, 480
BceAI	ACGGC	4 cut(s)	135, 387, 406, 644
BciT130I	CCWGG	2 cut(s)	267, 521
BciVI	GTATCC	1 cut(s)	300
BclI	TGATCA	1 cut(s)	607
BcoDI	GTCTC	1 cut(s)	251
BfaI	CTAG	1 cut(s)	311
BfuI	GTATCC	1 cut(s)	300
BglI	GCCNNNNNGGC	1 cut(s)	119
BisI	GCNGC	6 cut(s)	13, 76, 123, 126, 466, 469
BlsI	GCNGC	6 cut(s)	14, 77, 124, 127, 467, 470
Bme1390I	CCNGG	2 cut(s)	267, 521
BmgT120I	GGNCC	1 cut(s)	191
BmiI	GGNNCC	3 cut(s)	193, 284, 425
BmrFI	CCNGG	2 cut(s)	267, 521
BmsI	GCATC	1 cut(s)	34
BpmI	CTGGAG	1 cut(s)	701
Bpu10I	CCTNAGC	1 cut(s)	479
BpuEI	CTTGAG	1 cut(s)	149
BsaAI	YACGTR	1 cut(s)	38
BsaHI	GRCGYC	1 cut(s)	657
BsaJI	CCNNGG	4 cut(s)	265, 472, 519, 520
BsaXI	ACNNNNNCTCC	8 cut(s)	44, 74, 136, 166, 487, 516, 517, 546
Bsc4I	CCNNNNNNNGG	2 cut(s)	188, 223
Bse1I	ACTGG	2 cut(s)	114, 425
Bse21I	CCTNAGG	1 cut(s)	249
BseBI	CCWGG	2 cut(s)	267, 521
BseDI	CCNNGG	4 cut(s)	265, 472, 519, 520
BseGI	GGATG	1 cut(s)	697
BseLI	CCNNNNNNNGG	2 cut(s)	188, 223
BseMII	CTCAG	2 cut(s)	263, 493
BseNI	ACTGG	2 cut(s)	114, 425
BseX3I	CGGCCG	1 cut(s)	120
BseXI	GCAGC	4 cut(s)	24, 62, 477, 480
BseYI	CCCAGC	1 cut(s)	579
BsgI	GTGCAG	1 cut(s)	61
Bsh1236I	CGCG	1 cut(s)	444
Bsh1285I	CGRYCG	1 cut(s)	123
BshFI	GGCC	4 cut(s)	113, 122, 192, 477
BsiEI	CGRYCG	1 cut(s)	123
BsiHKAI	GWGCWC	1 cut(s)	687
BslFI	GGGAC	1 cut(s)	286
BslI	CCNNNNNNNGG	2 cut(s)	188, 223
BsmAI	GTCTC	1 cut(s)	251
BsmBI	CGTCTC	1 cut(s)	251
BsmFI	GGGAC	1 cut(s)	286
BsmI	GAATGC	1 cut(s)	339
BsnI	GGCC	4 cut(s)	113, 122, 192, 477
Bsp1286I	GDGCHC	1 cut(s)	687
Bsp143I	GATC	4 cut(s)	160, 206, 396, 607
BspACI	CCGC	2 cut(s)	123, 126
BspANI	GGCC	4 cut(s)	113, 122, 192, 477
BspCNI	CTCAG	2 cut(s)	262, 492
BspFNI	CGCG	1 cut(s)	444
BspLI	GGNNCC	3 cut(s)	193, 284, 425
BspPI	GGATC	1 cut(s)	214
BsrI	ACTGG	2 cut(s)	114, 425
BssECI	CCNNGG	4 cut(s)	265, 472, 519, 520
BssMI	GATC	4 cut(s)	160, 206, 396, 607
BssNI	GRCGYC	1 cut(s)	657
BssT1I	CCWWGG	1 cut(s)	472
Bst2UI	CCWGG	2 cut(s)	267, 521
Bst4CI	ACNGT	1 cut(s)	188
BstACI	GRCGYC	1 cut(s)	657
BstBAI	YACGTR	1 cut(s)	38
BstC8I	GCNNGC	1 cut(s)	442
BstDEI	CTNAG	2 cut(s)	249, 479
BstF5I	GGATG	1 cut(s)	697
BstFNI	CGCG	1 cut(s)	444
BstHHI	GCGC	1 cut(s)	339
BstKTI	GATC	4 cut(s)	163, 209, 399, 610
BstMAI	GTCTC	1 cut(s)	251
BstMBI	GATC	4 cut(s)	160, 206, 396, 607
BstMCI	CGRYCG	1 cut(s)	123
BstMWI	GCNNNNNNNGC	4 cut(s)	84, 119, 390, 474
BstNI	CCWGG	2 cut(s)	267, 521
BstSCI	CCNGG	2 cut(s)	265, 519
BstUI	CGCG	1 cut(s)	444
BstV1I	GCAGC	4 cut(s)	24, 62, 477, 480
BstX2I	RGATCY	1 cut(s)	206
BstYI	RGATCY	1 cut(s)	206
BstZI	CGGCCG	1 cut(s)	120
Bsu36I	CCTNAGG	1 cut(s)	249
BsuI	GTATCC	1 cut(s)	300
BsuRI	GGCC	4 cut(s)	113, 122, 192, 477
BtsCI	GGATG	1 cut(s)	697
BtsIMutI	CAGTG	1 cut(s)	193
Cac8I	GCNNGC	1 cut(s)	442
CfoI	GCGC	1 cut(s)	339
Cfr13I	GGNCC	1 cut(s)	191
CseI	GACGC	2 cut(s)	268, 665
Csp6I	GTAC	3 cut(s)	388, 559, 621
CviAII	CATG	1 cut(s)	16
CviQI	GTAC	3 cut(s)	388, 559, 621
DdeI	CTNAG	2 cut(s)	249, 479
DpnI	GATC	4 cut(s)	162, 208, 398, 609
DpnII	GATC	4 cut(s)	160, 206, 396, 607
EaeI	YGGCCR	2 cut(s)	111, 120
EagI	CGGCCG	1 cut(s)	120
Ecl136II	GAGCTC	1 cut(s)	685
EclXI	CGGCCG	1 cut(s)	120
Eco130I	CCWWGG	1 cut(s)	472
Eco24I	GRGCYC	1 cut(s)	687
Eco52I	CGGCCG	1 cut(s)	120
Eco53kI	GAGCTC	1 cut(s)	685
Eco57I	CTGAAG	1 cut(s)	206
Eco72I	CACGTG	1 cut(s)	38
Eco81I	CCTNAGG	1 cut(s)	249
EcoICRI	GAGCTC	1 cut(s)	685
EcoRII	CCWGG	2 cut(s)	265, 519
EcoT14I	CCWWGG	1 cut(s)	472
EcoT38I	GRGCYC	1 cut(s)	687
ErhI	CCWWGG	1 cut(s)	472
Esp3I	CGTCTC	1 cut(s)	251
FaeI	CATG	1 cut(s)	19
FaiI	YATR	4 cut(s)	17, 324, 612, 637
FaqI	GGGAC	1 cut(s)	286
FatI	CATG	1 cut(s)	15
FbaI	TGATCA	1 cut(s)	607
Fnu4HI	GCNGC	6 cut(s)	13, 76, 123, 126, 466, 469
FokI	GGATG	1 cut(s)	684
FriOI	GRGCYC	1 cut(s)	687
Fsp4HI	GCNGC	6 cut(s)	13, 76, 123, 126, 466, 469
FspAI	RTGCGCAY	1 cut(s)	338
FspBI	CTAG	1 cut(s)	311
FspI	TGCGCA	1 cut(s)	338
GlaI	GCGC	1 cut(s)	338
GluI	GCNGC	6 cut(s)	13, 76, 123, 126, 466, 469
GsaI	CCCAGC	1 cut(s)	583
GsuI	CTGGAG	1 cut(s)	701
HaeIII	GGCC	4 cut(s)	113, 122, 192, 477
HgaI	GACGC	2 cut(s)	268, 665
HhaI	GCGC	1 cut(s)	339
Hin1I	GRCGYC	1 cut(s)	657
Hin1II	CATG	1 cut(s)	19
Hin6I	GCGC	1 cut(s)	337
HinP1I	GCGC	1 cut(s)	337
HinfI	GANTC	4 cut(s)	42, 236, 430, 502
HphI	GGTGA	2 cut(s)	236, 617
Hpy166II	GTNNAC	1 cut(s)	41
Hpy188I	TCNGA	2 cut(s)	133, 179
Hpy188III	TCNNGA	5 cut(s)	166, 224, 427, 680, 701
Hpy8I	GTNNAC	1 cut(s)	41
Hpy99I	CGWCG	2 cut(s)	656, 659
HpyAV	CCTTC	5 cut(s)	13, 323, 395, 596, 698
HpyCH4III	ACNGT	1 cut(s)	188
HpyCH4IV	ACGT	1 cut(s)	37
HpyCH4V	TGCA	3 cut(s)	25, 78, 350
HpyF10VI	GCNNNNNNNGC	4 cut(s)	84, 119, 390, 474
HpyF3I	CTNAG	2 cut(s)	249, 479
HpySE526I	ACGT	1 cut(s)	37
Hsp92I	GRCGYC	1 cut(s)	657
Hsp92II	CATG	1 cut(s)	19
HspAI	GCGC	1 cut(s)	337
Ksp22I	TGATCA	1 cut(s)	607
Kzo9I	GATC	4 cut(s)	160, 206, 396, 607
LmnI	GCTCC	4 cut(s)	106, 157, 576, 682
Lsp1109I	GCAGC	4 cut(s)	24, 62, 477, 480
LweI	GCATC	1 cut(s)	34
MaeI	CTAG	1 cut(s)	311
MaeII	ACGT	1 cut(s)	37
MalI	GATC	4 cut(s)	162, 208, 398, 609
MboI	GATC	4 cut(s)	160, 206, 396, 607
MboII	GAAGA	3 cut(s)	201, 241, 560
MflI	RGATCY	1 cut(s)	206
MhlI	GDGCHC	1 cut(s)	687
MlsI	TGGCCA	1 cut(s)	113
MluCI	AATT	2 cut(s)	510, 584
MluNI	TGGCCA	1 cut(s)	113
MlyI	GAGTC	2 cut(s)	36, 496
MmeI	TCCRAC	1 cut(s)	156
Mox20I	TGGCCA	1 cut(s)	113
MscI	TGGCCA	1 cut(s)	113
MslI	CAYNNNNRTG	1 cut(s)	20
Msp20I	TGGCCA	1 cut(s)	113
MspR9I	CCNGG	2 cut(s)	267, 521
Mva1269I	GAATGC	1 cut(s)	339
MvaI	CCWGG	2 cut(s)	267, 521
MvnI	CGCG	1 cut(s)	444
MwoI	GCNNNNNNNGC	4 cut(s)	84, 119, 390, 474
NdeII	GATC	4 cut(s)	160, 206, 396, 607
NlaIII	CATG	1 cut(s)	19
NlaIV	GGNNCC	3 cut(s)	193, 284, 425
NsbI	TGCGCA	1 cut(s)	338
PasI	CCCWGGG	1 cut(s)	520
PcsI	WCGNNNNNNNCGW	4 cut(s)	156, 396, 651, 657
PctI	GAATGC	1 cut(s)	339
PfeI	GAWTC	2 cut(s)	236, 430
PkrI	GCNGC	6 cut(s)	14, 77, 124, 127, 467, 470
PleI	GAGTC	2 cut(s)	36, 496
PmaCI	CACGTG	1 cut(s)	38
PmlI	CACGTG	1 cut(s)	38
PpsI	GAGTC	2 cut(s)	36, 496
Ppu21I	YACGTR	1 cut(s)	38
Psp124BI	GAGCTC	1 cut(s)	687
Psp6I	CCWGG	2 cut(s)	265, 519
PspCI	CACGTG	1 cut(s)	38
PspFI	CCCAGC	1 cut(s)	579
PspGI	CCWGG	2 cut(s)	265, 519
PspN4I	GGNNCC	3 cut(s)	193, 284, 425
PspPI	GGNCC	1 cut(s)	191
PsuI	RGATCY	1 cut(s)	206
RsaI	GTAC	3 cut(s)	389, 560, 622
RsaNI	GTAC	3 cut(s)	388, 559, 621
RseI	CAYNNNNRTG	1 cut(s)	20
SacI	GAGCTC	1 cut(s)	687
SatI	GCNGC	6 cut(s)	13, 76, 123, 126, 466, 469
Sau3AI	GATC	4 cut(s)	160, 206, 396, 607
Sau96I	GGNCC	1 cut(s)	191
SchI	GAGTC	2 cut(s)	36, 496
ScrFI	CCNGG	2 cut(s)	267, 521
SduI	GDGCHC	1 cut(s)	687
SfaNI	GCATC	1 cut(s)	34
SfiI	GGCCNNNNNGGCC	1 cut(s)	119
SmiMI	CAYNNNNRTG	1 cut(s)	20
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
Sse9I	AATT	2 cut(s)	510, 584
SsiI	CCGC	2 cut(s)	123, 126
SspMI	CTAG	1 cut(s)	311
SstI	GAGCTC	1 cut(s)	687
StyD4I	CCNGG	2 cut(s)	265, 519
StyI	CCWWGG	1 cut(s)	472
TaaI	ACNGT	1 cut(s)	188
TaiI	ACGT	1 cut(s)	40
TaqI	TCGA	3 cut(s)	159, 399, 645
TasI	AATT	2 cut(s)	510, 584
TatI	WGTACW	1 cut(s)	620
TauI	GCSGC	2 cut(s)	125, 128
TfiI	GAWTC	2 cut(s)	236, 430
TscAI	CASTG	1 cut(s)	193
TseI	GCWGC	4 cut(s)	12, 75, 465, 468
TspDTI	ATGAA	2 cut(s)	32, 163
TspGWI	ACGGA	1 cut(s)	546
TspRI	CASTG	1 cut(s)	193
XapI	RAATTY	1 cut(s)	584
XspI	CTAG	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.