FvH4_2g34030

WUSCHEL-related homeobox

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0012231
Physical Location & Seq
Forward (+)
25374685 .. 25376096
1412 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g34030.t2

Sequence Viewer

Length: 696 bp
ATGGGAACGAGCAGCATGAAGGTGCATCAGTTCGCACGTGGACTCTGGGACTCTCCCACCACCAATCTTGAACCTTCCCTCAGCCTTGGATGCAAGCGCTTACGCCCTCTTGCTCCCAAACTCTCCGACACTGCTGCAACCACGGCTCTCGCTCCTTTCGATCTCAAAAGCTTCATCAGACCCGAAAGTGGCCCTAGAAACAAGCTTCCATCTCCTCCTCATGACCATGAGAAGAAAGATTCCTCCCCCTCTCAGGTAGAGATGCACCCGGGAGGGACGCGTTGGAATCCAACACAAGAGCAGATAGGGATATTGGAAATGCTGTATAGAGGAGGAATGCGAACTCCGAATGCTCAGCAGATAGAGCAAATCACGGCTCAGCTTGGCAAGTACGGTAAGATTGAAGGCAAGAATGTCTTCTACTGGTTCCAAAATCACAAAGCACGTGAAAGACAGAAGCAGAAACGCAGCACTCTTGGTCTCACCCACTCTCCAAGAACTCCGGCTCCTGTTATTACCACCACCGGAGACGTAGTACTGGAAAGAGAGGAAGACAGTCCATACAAGAGAAAGTGCATGAGCTGGGCATTTGATTGCTTGACAGACGATTCTAGTACTATAACTTGTAACAACGACGTCGTTGAGGGAGATAGAACTCTGGAGCTCTTCCCATTACGCCCAGAAGGCATGAAATGA

Protein Analysis

232

Amino Acids

25.98

Weight (kDa)

9.03

Isoelectric Point (pI)

67.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 93 - 152 6.9e-15 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012231)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G46480 AT1G46480
fragaria_vesca FvH4_2g34030 FvH4_2g34030
malus_domestica MD08G1096300.v1.1 MD15G1079000.v1.1
prunus_persica Prupe.1G432100_v2.0.a1
pyrus_communis pycom08g07830 pycom15g07360
rosa_chinensis RchiOBHm_Chr6g0308351
rosa_laevigata RLG00000010648
rosa_multiflora Rmu_sc0005523.1_g000011
rosa_roxburghii Rroxscaffold_7G00160220
rosa_rugosa Rorug06G0366200
rosa_samantha Rh6AG475500 Rh6BG485900 Rh6CG491100 Rh6DG477400
rosa_wichuraiana Rw6G041450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 639
AccII CGCG 1 cut(s) 280
AcvI CACGTG 2 cut(s) 38, 446
AcyI GRCGYC 1 cut(s) 636
AfaI GTAC 3 cut(s) 392, 537, 616
AfeI AGCGCT 1 cut(s) 98
AfiI CCNNNNNNNGG 2 cut(s) 188, 253
AflIII ACRYGT 1 cut(s) 278
AgsI TTSAA 2 cut(s) 71, 404
AloI GAACNNNNNNTCC 2 cut(s) 490, 522
AluBI AGCT 5 cut(s) 171, 205, 382, 582, 664
AluI AGCT 5 cut(s) 171, 205, 382, 582, 664
Alw21I GWGCWC 1 cut(s) 666
Alw26I GTCTC 2 cut(s) 485, 522
Ama87I CYCGRG 1 cut(s) 268
Aor51HI AGCGCT 1 cut(s) 98
AoxI GGCC 1 cut(s) 190
ApeKI GCWGC 3 cut(s) 12, 134, 468
Asp700I GAANNNNTTC 1 cut(s) 416
AspLEI GCGC 1 cut(s) 99
AspS9I GGNCC 1 cut(s) 191
AsuC2I CCSGG 2 cut(s) 269, 270
AsuHPI GGTGA 1 cut(s) 475
AvaI CYCGRG 1 cut(s) 268
BanII GRGCYC 1 cut(s) 666
BbrPI CACGTG 2 cut(s) 38, 446
BbsI GAAGAC 2 cut(s) 409, 558
Bbv12I GWGCWC 1 cut(s) 666
BbvCI CCTCAGC 1 cut(s) 80
BbvI GCAGC 3 cut(s) 24, 121, 480
BccI CCATC 1 cut(s) 217
BceAI ACGGC 2 cut(s) 159, 390
BcgI CGANNNNNNTGC 2 cut(s) 116, 150
BcnI CCSGG 2 cut(s) 269, 270
BcoDI GTCTC 2 cut(s) 485, 522
BfaI CTAG 2 cut(s) 195, 612
BfoI RGCGCY 1 cut(s) 100
BglI GCCNNNNNGGC 1 cut(s) 684
BisI GCNGC 3 cut(s) 13, 135, 469
BlpI GCTNAGC 2 cut(s) 354, 378
BlsI GCNGC 3 cut(s) 14, 136, 470
BmcAI AGTACT 2 cut(s) 537, 616
Bme1390I CCNGG 2 cut(s) 269, 270
BmeT110I CYCGRG 1 cut(s) 268
BmgT120I GGNCC 1 cut(s) 191
BmiI GGNNCC 2 cut(s) 428, 507
BmrFI CCNGG 2 cut(s) 269, 270
BmsI GCATC 3 cut(s) 34, 80, 252
BpiI GAAGAC 2 cut(s) 409, 558
BpmI CTGGAG 1 cut(s) 680
Bpu10I CCTNAGC 1 cut(s) 80
Bpu1102I GCTNAGC 2 cut(s) 354, 378
BpuMI CCSGG 2 cut(s) 269, 270
BsaAI YACGTR 2 cut(s) 38, 446
BsaHI GRCGYC 1 cut(s) 636
BsaI GGTCTC 1 cut(s) 485
BsaJI CCNNGG 3 cut(s) 85, 141, 268
BsaWI WCCGGW 1 cut(s) 524
BsaXI ACNNNNNCTCC 6 cut(s) 475, 490, 505, 519, 520, 549
Bsc4I CCNNNNNNNGG 2 cut(s) 188, 253
Bse1I ACTGG 2 cut(s) 428, 543
BseDI CCNNGG 3 cut(s) 85, 141, 268
BseGI GGATG 1 cut(s) 95
BseLI CCNNNNNNNGG 2 cut(s) 188, 253
BseMII CTCAG 4 cut(s) 94, 266, 368, 392
BseNI ACTGG 2 cut(s) 428, 543
BseRI GAGGAG 3 cut(s) 204, 207, 345
BseXI GCAGC 3 cut(s) 24, 121, 480
BseYI CCCAGC 1 cut(s) 582
Bsh1236I CGCG 1 cut(s) 280
BshFI GGCC 1 cut(s) 192
BsiHKAI GWGCWC 1 cut(s) 666
BsiHKCI CYCGRG 1 cut(s) 268
BsiSI CCGG 3 cut(s) 269, 503, 525
BslFI GGGAC 2 cut(s) 62, 289
BslI CCNNNNNNNGG 2 cut(s) 188, 253
BsmAI GTCTC 2 cut(s) 485, 522
BsmBI CGTCTC 1 cut(s) 522
BsmFI GGGAC 2 cut(s) 62, 289
BsmI GAATGC 2 cut(s) 342, 355
BsnI GGCC 1 cut(s) 192
Bso31I GGTCTC 1 cut(s) 485
BsoBI CYCGRG 1 cut(s) 268
Bsp1286I GDGCHC 1 cut(s) 666
Bsp143I GATC 1 cut(s) 160
Bsp1720I GCTNAGC 2 cut(s) 354, 378
BspANI GGCC 1 cut(s) 192
BspCNI CTCAG 4 cut(s) 93, 265, 367, 391
BspFNI CGCG 1 cut(s) 280
BspHI TCATGA 1 cut(s) 220
BspLI GGNNCC 2 cut(s) 428, 507
BspQI GCTCTTC 1 cut(s) 671
BspTNI GGTCTC 1 cut(s) 485
BsrI ACTGG 2 cut(s) 428, 543
BssECI CCNNGG 3 cut(s) 85, 141, 268
BssMI GATC 1 cut(s) 160
BssNI GRCGYC 1 cut(s) 636
BssT1I CCWWGG 1 cut(s) 85
Bst4CI ACNGT 2 cut(s) 395, 557
Bst6I CTCTTC 1 cut(s) 671
BstACI GRCGYC 1 cut(s) 636
BstBAI YACGTR 2 cut(s) 38, 446
BstC8I GCNNGC 1 cut(s) 95
BstDEI CTNAG 4 cut(s) 80, 252, 354, 378
BstDSI CCRYGG 1 cut(s) 141
BstF5I GGATG 1 cut(s) 95
BstFNI CGCG 1 cut(s) 280
BstH2I RGCGCY 1 cut(s) 100
BstHHI GCGC 1 cut(s) 99
BstKTI GATC 1 cut(s) 163
BstMAI GTCTC 2 cut(s) 485, 522
BstMBI GATC 1 cut(s) 160
BstMWI GCNNNNNNNGC 4 cut(s) 90, 143, 364, 684
BstSCI CCNGG 2 cut(s) 267, 268
BstUI CGCG 1 cut(s) 280
BstV1I GCAGC 3 cut(s) 24, 121, 480
BstV2I GAAGAC 2 cut(s) 409, 558
BsuRI GGCC 1 cut(s) 192
BtgI CCRYGG 1 cut(s) 141
BtsCI GGATG 1 cut(s) 95
BtsI GCAGTG 1 cut(s) 129
BtsIMutI CAGTG 1 cut(s) 129
Cac8I GCNNGC 1 cut(s) 95
CciI TCATGA 1 cut(s) 220
CfoI GCGC 1 cut(s) 99
Cfr13I GGNCC 1 cut(s) 191
Cfr9I CCCGGG 1 cut(s) 268
CseI GACGC 1 cut(s) 286
Csp6I GTAC 3 cut(s) 391, 536, 615
CspCI CAANNNNNGTGG 2 cut(s) 49, 84
CviAII CATG 5 cut(s) 16, 221, 227, 577, 688
CviQI GTAC 3 cut(s) 391, 536, 615
DdeI CTNAG 4 cut(s) 80, 252, 354, 378
DpnI GATC 1 cut(s) 162
DpnII GATC 1 cut(s) 160
Eam1104I CTCTTC 1 cut(s) 671
EarI CTCTTC 1 cut(s) 671
Ecl136II GAGCTC 1 cut(s) 664
Eco130I CCWWGG 1 cut(s) 85
Eco24I GRGCYC 1 cut(s) 666
Eco31I GGTCTC 1 cut(s) 485
Eco47III AGCGCT 1 cut(s) 98
Eco53kI GAGCTC 1 cut(s) 664
Eco72I CACGTG 2 cut(s) 38, 446
Eco88I CYCGRG 1 cut(s) 268
EcoICRI GAGCTC 1 cut(s) 664
EcoT14I CCWWGG 1 cut(s) 85
EcoT38I GRGCYC 1 cut(s) 666
ErhI CCWWGG 1 cut(s) 85
Esp3I CGTCTC 1 cut(s) 522
FaeI CATG 5 cut(s) 19, 224, 230, 580, 691
FaiI YATR 8 cut(s) 17, 222, 228, 327, 562, 578, 620, 689
FalI AAGNNNNNCTT 2 cut(s) 401, 433
FaqI GGGAC 2 cut(s) 62, 289
FatI CATG 5 cut(s) 15, 220, 226, 576, 687
Fnu4HI GCNGC 3 cut(s) 13, 135, 469
FokI GGATG 1 cut(s) 102
FriOI GRGCYC 1 cut(s) 666
Fsp4HI GCNGC 3 cut(s) 13, 135, 469
FspBI CTAG 2 cut(s) 195, 612
GlaI GCGC 1 cut(s) 98
GluI GCNGC 3 cut(s) 13, 135, 469
GsaI CCCAGC 1 cut(s) 586
GsuI CTGGAG 1 cut(s) 680
HaeII RGCGCY 1 cut(s) 100
HaeIII GGCC 1 cut(s) 192
HapII CCGG 3 cut(s) 269, 503, 525
HgaI GACGC 1 cut(s) 286
HhaI GCGC 1 cut(s) 99
Hin1I GRCGYC 1 cut(s) 636
Hin1II CATG 5 cut(s) 19, 224, 230, 580, 691
Hin6I GCGC 1 cut(s) 97
HinP1I GCGC 1 cut(s) 97
HindIII AAGCTT 2 cut(s) 169, 203
HinfI GANTC 5 cut(s) 42, 50, 239, 286, 608
HpaII CCGG 3 cut(s) 269, 503, 525
HphI GGTGA 1 cut(s) 475
Hpy166II GTNNAC 1 cut(s) 41
Hpy188I TCNGA 3 cut(s) 127, 179, 348
Hpy188III TCNNGA 3 cut(s) 68, 221, 659
Hpy8I GTNNAC 1 cut(s) 41
Hpy99I CGWCG 2 cut(s) 638, 641
HpyAV CCTTC 4 cut(s) 13, 84, 398, 677
HpyCH4III ACNGT 2 cut(s) 395, 557
HpyCH4IV ACGT 4 cut(s) 37, 445, 531, 636
HpyCH4V TGCA 5 cut(s) 25, 93, 137, 265, 576
HpyF10VI GCNNNNNNNGC 4 cut(s) 90, 143, 364, 684
HpyF3I CTNAG 4 cut(s) 80, 252, 354, 378
HpySE526I ACGT 4 cut(s) 37, 445, 531, 636
Hsp92I GRCGYC 1 cut(s) 636
Hsp92II CATG 5 cut(s) 19, 224, 230, 580, 691
HspAI GCGC 1 cut(s) 97
Kzo9I GATC 1 cut(s) 160
LguI GCTCTTC 1 cut(s) 671
LmnI GCTCC 4 cut(s) 118, 157, 511, 661
Lsp1109I GCAGC 3 cut(s) 24, 121, 480
LweI GCATC 3 cut(s) 34, 80, 252
MaeI CTAG 2 cut(s) 195, 612
MaeII ACGT 4 cut(s) 37, 445, 531, 636
MaeIII GTNAC 1 cut(s) 626
MalI GATC 1 cut(s) 162
MboI GATC 1 cut(s) 160
MboII GAAGA 4 cut(s) 244, 409, 563, 658
MhlI GDGCHC 1 cut(s) 666
MluI ACGCGT 1 cut(s) 278
MlyI GAGTC 2 cut(s) 36, 44
MmeI TCCRAC 3 cut(s) 150, 263, 314
MroXI GAANNNNTTC 1 cut(s) 416
MslI CAYNNNNRTG 2 cut(s) 20, 225
MspI CCGG 3 cut(s) 269, 503, 525
MspR9I CCNGG 2 cut(s) 269, 270
Mva1269I GAATGC 2 cut(s) 342, 355
MvnI CGCG 1 cut(s) 280
MwoI GCNNNNNNNGC 4 cut(s) 90, 143, 364, 684
NciI CCSGG 2 cut(s) 269, 270
NdeII GATC 1 cut(s) 160
NlaIII CATG 5 cut(s) 19, 224, 230, 580, 691
NlaIV GGNNCC 2 cut(s) 428, 507
PagI TCATGA 1 cut(s) 220
PciSI GCTCTTC 1 cut(s) 671
PcsI WCGNNNNNNNCGW 1 cut(s) 156
PctI GAATGC 2 cut(s) 342, 355
PdmI GAANNNNTTC 1 cut(s) 416
PfeI GAWTC 3 cut(s) 239, 286, 608
PkrI GCNGC 3 cut(s) 14, 136, 470
PleI GAGTC 2 cut(s) 36, 44
PmaCI CACGTG 2 cut(s) 38, 446
PmlI CACGTG 2 cut(s) 38, 446
PpsI GAGTC 2 cut(s) 36, 44
Ppu21I YACGTR 2 cut(s) 38, 446
Psp124BI GAGCTC 1 cut(s) 666
PspCI CACGTG 2 cut(s) 38, 446
PspFI CCCAGC 1 cut(s) 582
PspN4I GGNNCC 2 cut(s) 428, 507
PspPI GGNCC 1 cut(s) 191
RsaI GTAC 3 cut(s) 392, 537, 616
RsaNI GTAC 3 cut(s) 391, 536, 615
RseI CAYNNNNRTG 2 cut(s) 20, 225
SacI GAGCTC 1 cut(s) 666
SapI GCTCTTC 1 cut(s) 671
SatI GCNGC 3 cut(s) 13, 135, 469
Sau3AI GATC 1 cut(s) 160
Sau96I GGNCC 1 cut(s) 191
ScaI AGTACT 2 cut(s) 537, 616
SchI GAGTC 2 cut(s) 36, 44
ScrFI CCNGG 2 cut(s) 269, 270
SduI GDGCHC 1 cut(s) 666
SfaNI GCATC 3 cut(s) 34, 80, 252
SmaI CCCGGG 1 cut(s) 270
SmiMI CAYNNNNRTG 2 cut(s) 20, 225
SspMI CTAG 2 cut(s) 195, 612
SstI GAGCTC 1 cut(s) 666
StyD4I CCNGG 2 cut(s) 267, 268
StyI CCWWGG 1 cut(s) 85
TaaI ACNGT 2 cut(s) 395, 557
TaiI ACGT 4 cut(s) 40, 448, 534, 639
TaqI TCGA 1 cut(s) 159
TatI WGTACW 2 cut(s) 535, 614
TfiI GAWTC 3 cut(s) 239, 286, 608
TscAI CASTG 1 cut(s) 136
TseI GCWGC 3 cut(s) 12, 134, 468
TspDTI ATGAA 2 cut(s) 32, 163
TspMI CCCGGG 1 cut(s) 268
TspRI CASTG 1 cut(s) 136
XmaI CCCGGG 1 cut(s) 268
XmnI GAANNNNTTC 1 cut(s) 416
XspI CTAG 2 cut(s) 195, 612
ZraI GACGTC 1 cut(s) 637
ZrmI AGTACT 2 cut(s) 537, 616
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.