Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0012231

Physical Location & Seq

Genomic Coordinates Forward (+)

3199418 .. 3201128

Gene Structure 1711 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00160220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGGAATGAGCAGCATGAAGGTGCATCAGTTCGCACGTGGACTCTGGGACTCATCCACCACCAATCTTGAACCCTCCCTCAGCCTTGGATGCAAGCGCTTACGCCCTCTTGCTCCCAAACTCTCCGACACTACTGCAACCACTACTCTCGCTCCTTTCGATCTCAAGAGCTTCATCAGACCCGAAAGTGGCCCTAGAAACAAGCTAGCATCTCCTCATGACCATGAGAAGAAAGATTCCTCCCCCACCCAGGTAGAGATGCACCCGGGAGGGACGCGTTGGAATCCAACACAAGAGCAGATAGGGATATTAGAAATGCTGTATAGAGGAGGAATGCGGACTCCGAATGCTCAGCAGATAGAGCAAATCACTGCTCAGCTTGGCAAGTACGGCAAGATTGAAGGCAAGAATGTGTTCTACTGGTTCCAAAATCACAAAGCACGCGAAAGACAGAAGCAGAAACGCAGCACTCTTGGTCTCACCCACTCTCCAAGAACCCCGACTCCTGTAATTACCACCACCGGGGAAGTACTGGAAAGAGAGGAAGACAGTCCATACAAGAGAAAGTGCAGGAGCTGGGCATTTGATTGTTTGGGAGACGATTCTAGTACTATAACTTGTAACAAAGACGTCGTTGAGGGAGATAGAACTCTGGAACTCTTCCCATTACGCCCAGAAGGCATGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010065 GO:0010067 GO:0010087 GO:0010154 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051301 GO:0051716 GO:0061458 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

229

Amino Acids

25.92

Weight (kDa)

9.3

Isoelectric Point (pI)

61.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	92 - 151	1e-14	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012231)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G46480 AT1G46480
fragaria_vesca	FvH4_2g34030 FvH4_2g34030
malus_domestica	MD08G1096300.v1.1 MD15G1079000.v1.1
prunus_persica	Prupe.1G432100_v2.0.a1
pyrus_communis	pycom08g07830 pycom15g07360
rosa_chinensis	RchiOBHm_Chr6g0308351
rosa_laevigata	RLG00000010648
rosa_multiflora	Rmu_sc0005523.1_g000011
rosa_roxburghii	Rroxscaffold_7G00160220
rosa_rugosa	Rorug06G0366200
rosa_samantha	Rh6AG475500 Rh6BG485900 Rh6CG491100 Rh6DG477400
rosa_wichuraiana	Rw6G041450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	633
AccII	CGCG	2 cut(s)	277, 444
AciI	CCGC	1 cut(s)	337
AcvI	CACGTG	1 cut(s)	38
AcyI	GRCGYC	1 cut(s)	630
AfaI	GTAC	3 cut(s)	389, 531, 610
AfeI	AGCGCT	1 cut(s)	98
AfiI	CCNNNNNNNGG	3 cut(s)	188, 250, 522
AflIII	ACRYGT	1 cut(s)	275
AgsI	TTSAA	2 cut(s)	71, 401
AjnI	CCWGG	1 cut(s)	249
AloI	GAACNNNNNNTCC	2 cut(s)	487, 519
AluBI	AGCT	4 cut(s)	171, 205, 379, 576
AluI	AGCT	4 cut(s)	171, 205, 379, 576
Alw26I	GTCTC	2 cut(s)	482, 591
AlwNI	CAGNNNCTG	1 cut(s)	576
Ama87I	CYCGRG	1 cut(s)	265
Aor51HI	AGCGCT	1 cut(s)	98
AoxI	GGCC	1 cut(s)	190
ApeKI	GCWGC	2 cut(s)	12, 465
Asp700I	GAANNNNTTC	1 cut(s)	413
AspLEI	GCGC	1 cut(s)	99
AspS9I	GGNCC	1 cut(s)	191
AsuC2I	CCSGG	3 cut(s)	266, 267, 523
AsuHPI	GGTGA	1 cut(s)	472
AsuNHI	GCTAGC	1 cut(s)	205
AvaI	CYCGRG	1 cut(s)	265
BbrPI	CACGTG	1 cut(s)	38
BbsI	GAAGAC	1 cut(s)	552
BbvCI	CCTCAGC	1 cut(s)	80
BbvI	GCAGC	2 cut(s)	24, 477
BceAI	ACGGC	1 cut(s)	406
BcgI	CGANNNNNNTGC	2 cut(s)	116, 150
BciT130I	CCWGG	1 cut(s)	251
BcnI	CCSGG	3 cut(s)	266, 267, 523
BcoDI	GTCTC	2 cut(s)	482, 591
BfaI	CTAG	3 cut(s)	195, 206, 606
BfoI	RGCGCY	1 cut(s)	100
BglI	GCCNNNNNGGC	1 cut(s)	678
BisI	GCNGC	2 cut(s)	13, 466
BlpI	GCTNAGC	2 cut(s)	351, 375
BlsI	GCNGC	2 cut(s)	14, 467
BmcAI	AGTACT	2 cut(s)	531, 610
Bme1390I	CCNGG	4 cut(s)	251, 266, 267, 523
BmeT110I	CYCGRG	1 cut(s)	265
BmgT120I	GGNCC	1 cut(s)	191
BmiI	GGNNCC	1 cut(s)	425
BmrFI	CCNGG	4 cut(s)	251, 266, 267, 523
BmsI	GCATC	4 cut(s)	34, 80, 218, 249
BmtI	GCTAGC	1 cut(s)	209
BpiI	GAAGAC	1 cut(s)	552
Bpu10I	CCTNAGC	1 cut(s)	80
Bpu1102I	GCTNAGC	2 cut(s)	351, 375
BpuEI	CTTGAG	1 cut(s)	149
BpuMI	CCSGG	3 cut(s)	266, 267, 523
BsaAI	YACGTR	1 cut(s)	38
BsaHI	GRCGYC	1 cut(s)	630
BsaI	GGTCTC	1 cut(s)	482
BsaJI	CCNNGG	4 cut(s)	85, 249, 265, 522
BsaXI	ACNNNNNCTCC	6 cut(s)	136, 166, 472, 487, 502, 517
Bsc4I	CCNNNNNNNGG	3 cut(s)	188, 250, 522
Bse1I	ACTGG	2 cut(s)	425, 537
BseBI	CCWGG	1 cut(s)	251
BseDI	CCNNGG	4 cut(s)	85, 249, 265, 522
BseGI	GGATG	2 cut(s)	53, 95
BseLI	CCNNNNNNNGG	3 cut(s)	188, 250, 522
BseMII	CTCAG	3 cut(s)	94, 365, 389
BseNI	ACTGG	2 cut(s)	425, 537
BseRI	GAGGAG	2 cut(s)	204, 342
BseXI	GCAGC	2 cut(s)	24, 477
BseYI	CCCAGC	1 cut(s)	576
BsgI	GTGCAG	1 cut(s)	589
Bsh1236I	CGCG	2 cut(s)	277, 444
BshFI	GGCC	1 cut(s)	192
BsiHKCI	CYCGRG	1 cut(s)	265
BsiSI	CCGG	2 cut(s)	266, 522
BslFI	GGGAC	2 cut(s)	62, 286
BslI	CCNNNNNNNGG	3 cut(s)	188, 250, 522
BsmAI	GTCTC	2 cut(s)	482, 591
BsmBI	CGTCTC	1 cut(s)	591
BsmFI	GGGAC	2 cut(s)	62, 286
BsmI	GAATGC	2 cut(s)	339, 352
BsnI	GGCC	1 cut(s)	192
Bso31I	GGTCTC	1 cut(s)	482
BsoBI	CYCGRG	1 cut(s)	265
Bsp143I	GATC	1 cut(s)	160
Bsp1720I	GCTNAGC	2 cut(s)	351, 375
BspACI	CCGC	1 cut(s)	337
BspANI	GGCC	1 cut(s)	192
BspCNI	CTCAG	3 cut(s)	93, 364, 388
BspFNI	CGCG	2 cut(s)	277, 444
BspHI	TCATGA	1 cut(s)	217
BspLI	GGNNCC	1 cut(s)	425
BspOI	GCTAGC	1 cut(s)	209
BspTNI	GGTCTC	1 cut(s)	482
BsrI	ACTGG	2 cut(s)	425, 537
BssECI	CCNNGG	4 cut(s)	85, 249, 265, 522
BssMI	GATC	1 cut(s)	160
BssNI	GRCGYC	1 cut(s)	630
BssT1I	CCWWGG	1 cut(s)	85
Bst2UI	CCWGG	1 cut(s)	251
Bst4CI	ACNGT	1 cut(s)	551
Bst6I	CTCTTC	1 cut(s)	665
BstACI	GRCGYC	1 cut(s)	630
BstBAI	YACGTR	1 cut(s)	38
BstC8I	GCNNGC	3 cut(s)	95, 207, 442
BstDEI	CTNAG	3 cut(s)	80, 351, 375
BstF5I	GGATG	2 cut(s)	53, 95
BstFNI	CGCG	2 cut(s)	277, 444
BstH2I	RGCGCY	1 cut(s)	100
BstHHI	GCGC	1 cut(s)	99
BstKTI	GATC	1 cut(s)	163
BstMAI	GTCTC	2 cut(s)	482, 591
BstMBI	GATC	1 cut(s)	160
BstMWI	GCNNNNNNNGC	4 cut(s)	90, 361, 390, 678
BstNI	CCWGG	1 cut(s)	251
BstSCI	CCNGG	4 cut(s)	249, 264, 265, 521
BstUI	CGCG	2 cut(s)	277, 444
BstV1I	GCAGC	2 cut(s)	24, 477
BstV2I	GAAGAC	1 cut(s)	552
BsuRI	GGCC	1 cut(s)	192
BtsCI	GGATG	2 cut(s)	53, 95
BtsI	GCAGTG	1 cut(s)	369
BtsIMutI	CAGTG	1 cut(s)	369
Cac8I	GCNNGC	3 cut(s)	95, 207, 442
CaiI	CAGNNNCTG	1 cut(s)	576
CciI	TCATGA	1 cut(s)	217
CfoI	GCGC	1 cut(s)	99
Cfr13I	GGNCC	1 cut(s)	191
Cfr9I	CCCGGG	1 cut(s)	265
CseI	GACGC	1 cut(s)	283
Csp6I	GTAC	3 cut(s)	388, 530, 609
CspCI	CAANNNNNGTGG	2 cut(s)	49, 84
CviAII	CATG	4 cut(s)	16, 218, 224, 682
CviJI	RGCY	6 cut(s)	84, 171, 192, 205, 379, 576
CviKI_1	RGCY	6 cut(s)	84, 171, 192, 205, 379, 576
CviQI	GTAC	3 cut(s)	388, 530, 609
DdeI	CTNAG	3 cut(s)	80, 351, 375
DpnI	GATC	1 cut(s)	162
DpnII	GATC	1 cut(s)	160
Eam1104I	CTCTTC	1 cut(s)	665
EarI	CTCTTC	1 cut(s)	665
Eco130I	CCWWGG	1 cut(s)	85
Eco31I	GGTCTC	1 cut(s)	482
Eco47III	AGCGCT	1 cut(s)	98
Eco72I	CACGTG	1 cut(s)	38
Eco88I	CYCGRG	1 cut(s)	265
EcoRII	CCWGG	1 cut(s)	249
EcoT14I	CCWWGG	1 cut(s)	85
ErhI	CCWWGG	1 cut(s)	85
Esp3I	CGTCTC	1 cut(s)	591
FaeI	CATG	4 cut(s)	19, 221, 227, 685
FaiI	YATR	7 cut(s)	17, 219, 225, 324, 556, 614, 683
FaqI	GGGAC	2 cut(s)	62, 286
FatI	CATG	4 cut(s)	15, 217, 223, 681
Fnu4HI	GCNGC	2 cut(s)	13, 466
FokI	GGATG	2 cut(s)	40, 102
Fsp4HI	GCNGC	2 cut(s)	13, 466
FspBI	CTAG	3 cut(s)	195, 206, 606
GlaI	GCGC	1 cut(s)	98
GluI	GCNGC	2 cut(s)	13, 466
GsaI	CCCAGC	1 cut(s)	580
HaeII	RGCGCY	1 cut(s)	100
HaeIII	GGCC	1 cut(s)	192
HapII	CCGG	2 cut(s)	266, 522
HgaI	GACGC	1 cut(s)	283
HhaI	GCGC	1 cut(s)	99
Hin1I	GRCGYC	1 cut(s)	630
Hin1II	CATG	4 cut(s)	19, 221, 227, 685
Hin6I	GCGC	1 cut(s)	97
HinP1I	GCGC	1 cut(s)	97
HinfI	GANTC	7 cut(s)	42, 50, 236, 283, 340, 502, 602
HpaII	CCGG	2 cut(s)	266, 522
HphI	GGTGA	1 cut(s)	472
Hpy166II	GTNNAC	1 cut(s)	41
Hpy188I	TCNGA	3 cut(s)	127, 179, 345
Hpy188III	TCNNGA	4 cut(s)	68, 166, 218, 653
Hpy8I	GTNNAC	1 cut(s)	41
Hpy99I	CGWCG	1 cut(s)	635
HpyAV	CCTTC	3 cut(s)	13, 395, 671
HpyCH4III	ACNGT	1 cut(s)	551
HpyCH4IV	ACGT	2 cut(s)	37, 630
HpyCH4V	TGCA	5 cut(s)	25, 93, 137, 262, 570
HpyF10VI	GCNNNNNNNGC	4 cut(s)	90, 361, 390, 678
HpyF3I	CTNAG	3 cut(s)	80, 351, 375
HpySE526I	ACGT	2 cut(s)	37, 630
Hsp92I	GRCGYC	1 cut(s)	630
Hsp92II	CATG	4 cut(s)	19, 221, 227, 685
HspAI	GCGC	1 cut(s)	97
Kzo9I	GATC	1 cut(s)	160
LmnI	GCTCC	3 cut(s)	118, 157, 573
Lsp1109I	GCAGC	2 cut(s)	24, 477
LweI	GCATC	4 cut(s)	34, 80, 218, 249
MaeI	CTAG	3 cut(s)	195, 206, 606
MaeII	ACGT	2 cut(s)	37, 630
MaeIII	GTNAC	1 cut(s)	620
MalI	GATC	1 cut(s)	162
MboI	GATC	1 cut(s)	160
MboII	GAAGA	3 cut(s)	241, 557, 652
MluCI	AATT	1 cut(s)	510
MluI	ACGCGT	1 cut(s)	275
MlyI	GAGTC	4 cut(s)	36, 44, 334, 496
MmeI	TCCRAC	3 cut(s)	150, 260, 311
MroXI	GAANNNNTTC	1 cut(s)	413
MslI	CAYNNNNRTG	2 cut(s)	20, 222
MspI	CCGG	2 cut(s)	266, 522
MspR9I	CCNGG	4 cut(s)	251, 266, 267, 523
Mva1269I	GAATGC	2 cut(s)	339, 352
MvaI	CCWGG	1 cut(s)	251
MvnI	CGCG	2 cut(s)	277, 444
MwoI	GCNNNNNNNGC	4 cut(s)	90, 361, 390, 678
NciI	CCSGG	3 cut(s)	266, 267, 523
NdeII	GATC	1 cut(s)	160
NheI	GCTAGC	1 cut(s)	205
NlaIII	CATG	4 cut(s)	19, 221, 227, 685
NlaIV	GGNNCC	1 cut(s)	425
PagI	TCATGA	1 cut(s)	217
PcsI	WCGNNNNNNNCGW	1 cut(s)	156
PctI	GAATGC	2 cut(s)	339, 352
PdmI	GAANNNNTTC	1 cut(s)	413
PfeI	GAWTC	3 cut(s)	236, 283, 602
PkrI	GCNGC	2 cut(s)	14, 467
PleI	GAGTC	4 cut(s)	36, 44, 334, 496
PmaCI	CACGTG	1 cut(s)	38
PmlI	CACGTG	1 cut(s)	38
PpsI	GAGTC	4 cut(s)	36, 44, 334, 496
Ppu21I	YACGTR	1 cut(s)	38
Psp6I	CCWGG	1 cut(s)	249
PspCI	CACGTG	1 cut(s)	38
PspFI	CCCAGC	1 cut(s)	576
PspGI	CCWGG	1 cut(s)	249
PspN4I	GGNNCC	1 cut(s)	425
PspPI	GGNCC	1 cut(s)	191
PstNI	CAGNNNCTG	1 cut(s)	576
RsaI	GTAC	3 cut(s)	389, 531, 610
RsaNI	GTAC	3 cut(s)	388, 530, 609
RseI	CAYNNNNRTG	2 cut(s)	20, 222
SatI	GCNGC	2 cut(s)	13, 466
Sau3AI	GATC	1 cut(s)	160
Sau96I	GGNCC	1 cut(s)	191
ScaI	AGTACT	2 cut(s)	531, 610
SchI	GAGTC	4 cut(s)	36, 44, 334, 496
ScrFI	CCNGG	4 cut(s)	251, 266, 267, 523
SetI	ASST	8 cut(s)	24, 40, 173, 207, 255, 381, 578, 633
SfaNI	GCATC	4 cut(s)	34, 80, 218, 249
SmaI	CCCGGG	1 cut(s)	267
SmiMI	CAYNNNNRTG	2 cut(s)	20, 222
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
Sse9I	AATT	1 cut(s)	510
SsiI	CCGC	1 cut(s)	337
SspMI	CTAG	3 cut(s)	195, 206, 606
StyD4I	CCNGG	4 cut(s)	249, 264, 265, 521
StyI	CCWWGG	1 cut(s)	85
TaaI	ACNGT	1 cut(s)	551
TaiI	ACGT	2 cut(s)	40, 633
TaqI	TCGA	1 cut(s)	159
TasI	AATT	1 cut(s)	510
TatI	WGTACW	2 cut(s)	529, 608
TfiI	GAWTC	3 cut(s)	236, 283, 602
TscAI	CASTG	1 cut(s)	376
TseI	GCWGC	2 cut(s)	12, 465
TspDTI	ATGAA	2 cut(s)	32, 163
TspMI	CCCGGG	1 cut(s)	265
TspRI	CASTG	1 cut(s)	376
XmaI	CCCGGG	1 cut(s)	265
XmnI	GAANNNNTTC	1 cut(s)	413
XspI	CTAG	3 cut(s)	195, 206, 606
ZraI	GACGTC	1 cut(s)	631
ZrmI	AGTACT	2 cut(s)	531, 610

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.