Rh6DG477400

WUSCHEL-related homeobox

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0012231
Physical Location & Seq
Reverse (-)
64270276 .. 64271295
1020 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG477400.1

Sequence Viewer

Length: 420 bp
ATGGGAATGAGCAGCATGAAGGTGCATCAGTTCGCACGTGGACTCTGGGACTCATCCACCACCAATCTTGAACCCTCCCTCAGCCTTGGATGCAAGCGCTTACGCCCTCTTGCTCCCAAACTCTCCGACACTAGTGCAACCACTACTCTCGCTCCTTTCGATCTCAAGAGCTTCATCAGACCCGAAAGTGGCCCTAGAAACAAGCTAGCATCTCCTCATGACCATGAGAAGAAAGATTCCTCCCCCTCCCAGGGGGAAGTACTGGAAAGAGAGGAAGACAGTCCATACAAGAGAAAGTGCAGGAGCTGGGCATTTGATTGTTTGGGAGACGATTCTAGTATTATAACTTGTAACAAAGACGTCGTTGAGGGAGATAGAACTCTGGAGCTCTTCCCATTACGCCCAGAAGGCATGAGATGA

Protein Analysis

139

Amino Acids

15.55

Weight (kDa)

6.83

Isoelectric Point (pI)

67.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012231)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G46480 AT1G46480
fragaria_vesca FvH4_2g34030 FvH4_2g34030
malus_domestica MD08G1096300.v1.1 MD15G1079000.v1.1
prunus_persica Prupe.1G432100_v2.0.a1
pyrus_communis pycom08g07830 pycom15g07360
rosa_chinensis RchiOBHm_Chr6g0308351
rosa_laevigata RLG00000010648
rosa_multiflora Rmu_sc0005523.1_g000011
rosa_roxburghii Rroxscaffold_7G00160220
rosa_rugosa Rorug06G0366200
rosa_samantha Rh6AG475500 Rh6BG485900 Rh6CG491100 Rh6DG477400
rosa_wichuraiana Rw6G041450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 344
AatII GACGTC 1 cut(s) 363
AcvI CACGTG 1 cut(s) 38
AcyI GRCGYC 1 cut(s) 360
AfaI GTAC 1 cut(s) 261
AfeI AGCGCT 1 cut(s) 98
AfiI CCNNNNNNNGG 4 cut(s) 188, 250, 251, 252
AgsI TTSAA 1 cut(s) 71
AhlI ACTAGT 1 cut(s) 131
AjnI CCWGG 1 cut(s) 249
AluBI AGCT 4 cut(s) 171, 205, 306, 388
AluI AGCT 4 cut(s) 171, 205, 306, 388
Alw21I GWGCWC 1 cut(s) 390
Alw26I GTCTC 1 cut(s) 321
AlwNI CAGNNNCTG 1 cut(s) 306
Aor51HI AGCGCT 1 cut(s) 98
AoxI GGCC 1 cut(s) 190
ApeKI GCWGC 1 cut(s) 12
AspLEI GCGC 1 cut(s) 99
AspS9I GGNCC 1 cut(s) 191
AsuNHI GCTAGC 1 cut(s) 205
BanII GRGCYC 1 cut(s) 390
BbrPI CACGTG 1 cut(s) 38
BbsI GAAGAC 1 cut(s) 282
Bbv12I GWGCWC 1 cut(s) 390
BbvCI CCTCAGC 1 cut(s) 80
BbvI GCAGC 1 cut(s) 24
BcgI CGANNNNNNTGC 2 cut(s) 116, 150
BciT130I CCWGG 1 cut(s) 251
BcoDI GTCTC 1 cut(s) 321
BcuI ACTAGT 1 cut(s) 131
BfaI CTAG 4 cut(s) 132, 195, 206, 336
BfoI RGCGCY 1 cut(s) 100
BglI GCCNNNNNGGC 1 cut(s) 408
BisI GCNGC 1 cut(s) 13
BlsI GCNGC 1 cut(s) 14
BmcAI AGTACT 1 cut(s) 261
Bme1390I CCNGG 1 cut(s) 251
BmgT120I GGNCC 1 cut(s) 191
BmrFI CCNGG 1 cut(s) 251
BmsI GCATC 3 cut(s) 34, 80, 218
BmtI GCTAGC 1 cut(s) 209
BpiI GAAGAC 1 cut(s) 282
BpmI CTGGAG 1 cut(s) 404
Bpu10I CCTNAGC 1 cut(s) 80
BpuEI CTTGAG 1 cut(s) 149
BsaAI YACGTR 1 cut(s) 38
BsaHI GRCGYC 1 cut(s) 360
BsaJI CCNNGG 3 cut(s) 85, 249, 250
BsaXI ACNNNNNCTCC 2 cut(s) 136, 166
Bsc4I CCNNNNNNNGG 4 cut(s) 188, 250, 251, 252
Bse1I ACTGG 1 cut(s) 267
BseBI CCWGG 1 cut(s) 251
BseDI CCNNGG 3 cut(s) 85, 249, 250
BseGI GGATG 2 cut(s) 53, 95
BseLI CCNNNNNNNGG 4 cut(s) 188, 250, 251, 252
BseMII CTCAG 1 cut(s) 94
BseNI ACTGG 1 cut(s) 267
BseRI GAGGAG 1 cut(s) 204
BseXI GCAGC 1 cut(s) 24
BseYI CCCAGC 1 cut(s) 306
BsgI GTGCAG 1 cut(s) 319
BshFI GGCC 1 cut(s) 192
BsiHKAI GWGCWC 1 cut(s) 390
BslFI GGGAC 1 cut(s) 62
BslI CCNNNNNNNGG 4 cut(s) 188, 250, 251, 252
BsmAI GTCTC 1 cut(s) 321
BsmBI CGTCTC 1 cut(s) 321
BsmFI GGGAC 1 cut(s) 62
BsnI GGCC 1 cut(s) 192
Bsp1286I GDGCHC 1 cut(s) 390
Bsp143I GATC 1 cut(s) 160
BspANI GGCC 1 cut(s) 192
BspCNI CTCAG 1 cut(s) 93
BspHI TCATGA 1 cut(s) 217
BspOI GCTAGC 1 cut(s) 209
BspQI GCTCTTC 1 cut(s) 395
BsrI ACTGG 1 cut(s) 267
BssECI CCNNGG 3 cut(s) 85, 249, 250
BssMI GATC 1 cut(s) 160
BssNI GRCGYC 1 cut(s) 360
BssT1I CCWWGG 1 cut(s) 85
Bst2UI CCWGG 1 cut(s) 251
Bst4CI ACNGT 1 cut(s) 281
Bst6I CTCTTC 1 cut(s) 395
BstACI GRCGYC 1 cut(s) 360
BstBAI YACGTR 1 cut(s) 38
BstC8I GCNNGC 2 cut(s) 95, 207
BstDEI CTNAG 1 cut(s) 80
BstF5I GGATG 2 cut(s) 53, 95
BstH2I RGCGCY 1 cut(s) 100
BstHHI GCGC 1 cut(s) 99
BstKTI GATC 1 cut(s) 163
BstMAI GTCTC 1 cut(s) 321
BstMBI GATC 1 cut(s) 160
BstMWI GCNNNNNNNGC 2 cut(s) 90, 408
BstNI CCWGG 1 cut(s) 251
BstSCI CCNGG 1 cut(s) 249
BstV1I GCAGC 1 cut(s) 24
BstV2I GAAGAC 1 cut(s) 282
BsuRI GGCC 1 cut(s) 192
BtsCI GGATG 2 cut(s) 53, 95
Cac8I GCNNGC 2 cut(s) 95, 207
CaiI CAGNNNCTG 1 cut(s) 306
CciI TCATGA 1 cut(s) 217
CfoI GCGC 1 cut(s) 99
Cfr13I GGNCC 1 cut(s) 191
Csp6I GTAC 1 cut(s) 260
CspCI CAANNNNNGTGG 2 cut(s) 49, 84
CviAII CATG 4 cut(s) 16, 218, 224, 412
CviJI RGCY 6 cut(s) 84, 171, 192, 205, 306, 388
CviKI_1 RGCY 6 cut(s) 84, 171, 192, 205, 306, 388
CviQI GTAC 1 cut(s) 260
DdeI CTNAG 1 cut(s) 80
DpnI GATC 1 cut(s) 162
DpnII GATC 1 cut(s) 160
Eam1104I CTCTTC 1 cut(s) 395
EarI CTCTTC 1 cut(s) 395
Ecl136II GAGCTC 1 cut(s) 388
Eco130I CCWWGG 1 cut(s) 85
Eco24I GRGCYC 1 cut(s) 390
Eco47III AGCGCT 1 cut(s) 98
Eco53kI GAGCTC 1 cut(s) 388
Eco72I CACGTG 1 cut(s) 38
EcoICRI GAGCTC 1 cut(s) 388
EcoRII CCWGG 1 cut(s) 249
EcoT14I CCWWGG 1 cut(s) 85
EcoT38I GRGCYC 1 cut(s) 390
ErhI CCWWGG 1 cut(s) 85
Esp3I CGTCTC 1 cut(s) 321
FaeI CATG 4 cut(s) 19, 221, 227, 415
FaiI YATR 6 cut(s) 17, 219, 225, 286, 344, 413
FaqI GGGAC 1 cut(s) 62
FatI CATG 4 cut(s) 15, 217, 223, 411
Fnu4HI GCNGC 1 cut(s) 13
FokI GGATG 2 cut(s) 40, 102
FriOI GRGCYC 1 cut(s) 390
Fsp4HI GCNGC 1 cut(s) 13
FspBI CTAG 4 cut(s) 132, 195, 206, 336
GlaI GCGC 1 cut(s) 98
GluI GCNGC 1 cut(s) 13
GsaI CCCAGC 1 cut(s) 310
GsuI CTGGAG 1 cut(s) 404
HaeII RGCGCY 1 cut(s) 100
HaeIII GGCC 1 cut(s) 192
HhaI GCGC 1 cut(s) 99
Hin1I GRCGYC 1 cut(s) 360
Hin1II CATG 4 cut(s) 19, 221, 227, 415
Hin6I GCGC 1 cut(s) 97
HinP1I GCGC 1 cut(s) 97
HinfI GANTC 4 cut(s) 42, 50, 236, 332
Hpy166II GTNNAC 1 cut(s) 41
Hpy188I TCNGA 2 cut(s) 127, 179
Hpy188III TCNNGA 4 cut(s) 68, 166, 218, 383
Hpy8I GTNNAC 1 cut(s) 41
Hpy99I CGWCG 1 cut(s) 365
HpyAV CCTTC 2 cut(s) 13, 401
HpyCH4III ACNGT 1 cut(s) 281
HpyCH4IV ACGT 2 cut(s) 37, 360
HpyCH4V TGCA 4 cut(s) 25, 93, 137, 300
HpyF10VI GCNNNNNNNGC 2 cut(s) 90, 408
HpyF3I CTNAG 1 cut(s) 80
HpySE526I ACGT 2 cut(s) 37, 360
Hsp92I GRCGYC 1 cut(s) 360
Hsp92II CATG 4 cut(s) 19, 221, 227, 415
HspAI GCGC 1 cut(s) 97
Kzo9I GATC 1 cut(s) 160
LguI GCTCTTC 1 cut(s) 395
LmnI GCTCC 4 cut(s) 118, 157, 303, 385
LpnPI CCDG 7 cut(s) 31, 236, 248, 263, 286, 292, 368
Lsp1109I GCAGC 1 cut(s) 24
LweI GCATC 3 cut(s) 34, 80, 218
MaeI CTAG 4 cut(s) 132, 195, 206, 336
MaeII ACGT 2 cut(s) 37, 360
MaeIII GTNAC 1 cut(s) 350
MalI GATC 1 cut(s) 162
MboI GATC 1 cut(s) 160
MboII GAAGA 3 cut(s) 241, 287, 382
MhlI GDGCHC 1 cut(s) 390
MlyI GAGTC 2 cut(s) 36, 44
MmeI TCCRAC 1 cut(s) 150
MnlI CCTC 8 cut(s) 85, 89, 117, 225, 250, 256, 265, 361
MslI CAYNNNNRTG 2 cut(s) 20, 222
MspR9I CCNGG 1 cut(s) 251
MvaI CCWGG 1 cut(s) 251
MwoI GCNNNNNNNGC 2 cut(s) 90, 408
NdeII GATC 1 cut(s) 160
NheI GCTAGC 1 cut(s) 205
NlaIII CATG 4 cut(s) 19, 221, 227, 415
PagI TCATGA 1 cut(s) 217
PasI CCCWGGG 1 cut(s) 250
PciSI GCTCTTC 1 cut(s) 395
PcsI WCGNNNNNNNCGW 1 cut(s) 156
PfeI GAWTC 2 cut(s) 236, 332
PkrI GCNGC 1 cut(s) 14
PleI GAGTC 2 cut(s) 36, 44
PmaCI CACGTG 1 cut(s) 38
PmlI CACGTG 1 cut(s) 38
PpsI GAGTC 2 cut(s) 36, 44
Ppu21I YACGTR 1 cut(s) 38
PsiI TTATAA 1 cut(s) 344
Psp124BI GAGCTC 1 cut(s) 390
Psp6I CCWGG 1 cut(s) 249
PspCI CACGTG 1 cut(s) 38
PspFI CCCAGC 1 cut(s) 306
PspGI CCWGG 1 cut(s) 249
PspPI GGNCC 1 cut(s) 191
PstNI CAGNNNCTG 1 cut(s) 306
RsaI GTAC 1 cut(s) 261
RsaNI GTAC 1 cut(s) 260
RseI CAYNNNNRTG 2 cut(s) 20, 222
SacI GAGCTC 1 cut(s) 390
SapI GCTCTTC 1 cut(s) 395
SatI GCNGC 1 cut(s) 13
Sau3AI GATC 1 cut(s) 160
Sau96I GGNCC 1 cut(s) 191
ScaI AGTACT 1 cut(s) 261
SchI GAGTC 2 cut(s) 36, 44
ScrFI CCNGG 1 cut(s) 251
SduI GDGCHC 1 cut(s) 390
SetI ASST 7 cut(s) 24, 40, 173, 207, 308, 363, 390
SfaNI GCATC 3 cut(s) 34, 80, 218
SmiMI CAYNNNNRTG 2 cut(s) 20, 222
SmlI CTYRAG 1 cut(s) 164
SmoI CTYRAG 1 cut(s) 164
SpeI ACTAGT 1 cut(s) 131
SspMI CTAG 4 cut(s) 132, 195, 206, 336
SstI GAGCTC 1 cut(s) 390
StyD4I CCNGG 1 cut(s) 249
StyI CCWWGG 1 cut(s) 85
TaaI ACNGT 1 cut(s) 281
TaiI ACGT 2 cut(s) 40, 363
TaqI TCGA 1 cut(s) 159
TatI WGTACW 1 cut(s) 259
TfiI GAWTC 2 cut(s) 236, 332
TseI GCWGC 1 cut(s) 12
TspDTI ATGAA 2 cut(s) 32, 163
XspI CTAG 4 cut(s) 132, 195, 206, 336
ZraI GACGTC 1 cut(s) 361
ZrmI AGTACT 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.