Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0012231

Physical Location & Seq

Genomic Coordinates Forward (+)

6322772 .. 6324495

Gene Structure 1724 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g07830.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGACGCACCTGTTTGGCTTGGCATGCATTCAGATAGATTTGGAAGGTCGAATTGTGATCTCATGCATACATGTCTCTCTTTCTCTCTCTTTCTCTCTCTCACACACAAACACAACATTCTCTTTTTTCTTGCTTTATCTTTTCATATTTTTAGTATGGAAAATCCCAAGTCAACCGCACCTCATCATTTGGTCTTGGTTGTTCCATACACCACCTCATTTCCCACTTTGTCACTTTAATAACTGTGATCATGATCTTCGTTTTTGGCCCTCTTATATAATTACTTGCTATCTAGCTCTAAGGCTCTATCATTCAGTACTCCACTCACCACATATGGGAATGAGCAGCATGAAGGTGCATCAGTTCGCACGTGGACTCTGGGAGCACGAACCCTCCCTCACGCTTGGCTGCACCAAACGCTTACGCCCTCTTGCTCCCAAACTGGCCAACACCGCGGCCGCCACCTCCGACACTACTACGACTCTCGCTCCTTTCGATCTCAAGAGTTTCATCAGACCTGAAAGTGGCCCCAGAAAACTTGGATCTTCTGACCATCTTCAGGAGAAGAAAGATTCCCCCCACCCTCAGGTAGAGACGCACCCGGGAGGGACACGCTGGAACCCTACGCAAGAACAGATAGGGATACTTGAAATGTTGTATAGAGAAGGAATGCGCACTCCTAATGCACAAGAAATAGAGCAAATCACGGCTCAACTTGGCAAGTACGGCAAGCACTTGATCGATCGAAGGAAAGAATGTGTTTTACTGGTTCCAGAATCACAAGGCACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010065 GO:0010067 GO:0010087 GO:0010154 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051301 GO:0051716 GO:0061458 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

264

Amino Acids

30.08

Weight (kDa)

8.47

Isoelectric Point (pI)

48.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012231)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G46480 AT1G46480
fragaria_vesca	FvH4_2g34030 FvH4_2g34030
malus_domestica	MD08G1096300.v1.1 MD15G1079000.v1.1
prunus_persica	Prupe.1G432100_v2.0.a1
pyrus_communis	pycom08g07830 pycom15g07360
rosa_chinensis	RchiOBHm_Chr6g0308351
rosa_laevigata	RLG00000010648
rosa_multiflora	Rmu_sc0005523.1_g000011
rosa_roxburghii	Rroxscaffold_7G00160220
rosa_rugosa	Rorug06G0366200
rosa_samantha	Rh6AG475500 Rh6BG485900 Rh6CG491100 Rh6DG477400
rosa_wichuraiana	Rw6G041450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	674
AccII	CGCG	1 cut(s)	455
AciI	CCGC	4 cut(s)	176, 453, 455, 459
AclWI	GGATC	1 cut(s)	550
AcoI	YGGCCR	2 cut(s)	444, 456
AcuI	CTGAAG	1 cut(s)	542
AcvI	CACGTG	2 cut(s)	371, 789
AfaI	GTAC	2 cut(s)	318, 725
AfiI	CCNNNNNNNGG	4 cut(s)	335, 524, 559, 586
AflIII	ACRYGT	1 cut(s)	70
AgsI	TTSAA	1 cut(s)	650
AluBI	AGCT	1 cut(s)	296
AluI	AGCT	1 cut(s)	296
Alw21I	GWGCWC	1 cut(s)	387
Alw26I	GTCTC	2 cut(s)	79, 587
AlwI	GGATC	1 cut(s)	550
Ama87I	CYCGRG	1 cut(s)	601
AoxI	GGCC	4 cut(s)	266, 444, 456, 526
ApeKI	GCWGC	2 cut(s)	345, 408
AspLEI	GCGC	1 cut(s)	675
AspS9I	GGNCC	2 cut(s)	267, 527
AsuC2I	CCSGG	2 cut(s)	602, 603
AsuHPI	GGTGA	1 cut(s)	318
AvaI	CYCGRG	1 cut(s)	601
AxyI	CCTNAGG	1 cut(s)	585
BalI	TGGCCA	1 cut(s)	446
BbrPI	CACGTG	2 cut(s)	371, 789
Bbv12I	GWGCWC	1 cut(s)	387
BbvI	GCAGC	2 cut(s)	357, 395
BccI	CCATC	1 cut(s)	561
BceAI	ACGGC	2 cut(s)	723, 742
BciVI	GTATCC	1 cut(s)	636
BclI	TGATCA	1 cut(s)	247
BcnI	CCSGG	2 cut(s)	602, 603
BcoDI	GTCTC	2 cut(s)	79, 587
BfaI	CTAG	1 cut(s)	293
BfuI	GTATCC	1 cut(s)	636
BisI	GCNGC	4 cut(s)	346, 409, 456, 459
BlsI	GCNGC	4 cut(s)	347, 410, 457, 460
BmcAI	AGTACT	1 cut(s)	318
Bme1390I	CCNGG	2 cut(s)	602, 603
BmeT110I	CYCGRG	1 cut(s)	601
BmgT120I	GGNCC	2 cut(s)	267, 527
BmiI	GGNNCC	3 cut(s)	529, 620, 771
BmrFI	CCNGG	2 cut(s)	602, 603
BmsI	GCATC	1 cut(s)	367
BpuEI	CTTGAG	1 cut(s)	485
BpuMI	CCSGG	2 cut(s)	602, 603
Bsa29I	ATCGAT	1 cut(s)	741
BsaAI	YACGTR	2 cut(s)	371, 789
BsaBI	GATNNNNATC	1 cut(s)	252
BsaJI	CCNNGG	2 cut(s)	453, 601
BsaXI	ACNNNNNCTCC	4 cut(s)	377, 407, 472, 502
Bsc4I	CCNNNNNNNGG	4 cut(s)	335, 524, 559, 586
Bse1I	ACTGG	2 cut(s)	447, 771
Bse21I	CCTNAGG	1 cut(s)	585
Bse8I	GATNNNNATC	1 cut(s)	252
BseCI	ATCGAT	1 cut(s)	741
BseDI	CCNNGG	2 cut(s)	453, 601
BseJI	GATNNNNATC	1 cut(s)	252
BseLI	CCNNNNNNNGG	4 cut(s)	335, 524, 559, 586
BseMII	CTCAG	1 cut(s)	599
BseNI	ACTGG	2 cut(s)	447, 771
BseX3I	CGGCCG	1 cut(s)	456
BseXI	GCAGC	2 cut(s)	357, 395
BsgI	GTGCAG	1 cut(s)	394
Bsh1236I	CGCG	1 cut(s)	455
Bsh1285I	CGRYCG	2 cut(s)	459, 745
BshFI	GGCC	4 cut(s)	268, 446, 458, 528
BshVI	ATCGAT	1 cut(s)	741
BsiEI	CGRYCG	2 cut(s)	459, 745
BsiHKAI	GWGCWC	1 cut(s)	387
BsiHKCI	CYCGRG	1 cut(s)	601
BsiSI	CCGG	1 cut(s)	602
BslFI	GGGAC	1 cut(s)	622
BslI	CCNNNNNNNGG	4 cut(s)	335, 524, 559, 586
BsmAI	GTCTC	2 cut(s)	79, 587
BsmBI	CGTCTC	1 cut(s)	587
BsmFI	GGGAC	1 cut(s)	622
BsmI	GAATGC	2 cut(s)	27, 675
BsnI	GGCC	4 cut(s)	268, 446, 458, 528
BsoBI	CYCGRG	1 cut(s)	601
Bsp1286I	GDGCHC	1 cut(s)	387
Bsp143I	GATC	7 cut(s)	57, 247, 253, 496, 542, 738, 742
BspACI	CCGC	4 cut(s)	176, 453, 455, 459
BspANI	GGCC	4 cut(s)	268, 446, 458, 528
BspCNI	CTCAG	1 cut(s)	598
BspDI	ATCGAT	1 cut(s)	741
BspFNI	CGCG	1 cut(s)	455
BspHI	TCATGA	1 cut(s)	250
BspLI	GGNNCC	3 cut(s)	529, 620, 771
BspPI	GGATC	1 cut(s)	550
BsrI	ACTGG	2 cut(s)	447, 771
BssECI	CCNNGG	2 cut(s)	453, 601
BssMI	GATC	7 cut(s)	57, 247, 253, 496, 542, 738, 742
Bst4CI	ACNGT	1 cut(s)	245
BstBAI	YACGTR	2 cut(s)	371, 789
BstC8I	GCNNGC	2 cut(s)	25, 731
BstDEI	CTNAG	2 cut(s)	299, 585
BstDSI	CCRYGG	1 cut(s)	453
BstFNI	CGCG	1 cut(s)	455
BstHHI	GCGC	1 cut(s)	675
BstKTI	GATC	7 cut(s)	60, 250, 256, 499, 545, 741, 745
BstMAI	GTCTC	2 cut(s)	79, 587
BstMBI	GATC	7 cut(s)	57, 247, 253, 496, 542, 738, 742
BstMCI	CGRYCG	2 cut(s)	459, 745
BstMWI	GCNNNNNNNGC	4 cut(s)	24, 417, 452, 726
BstNSI	RCATGY	2 cut(s)	27, 74
BstSCI	CCNGG	2 cut(s)	600, 601
BstUI	CGCG	1 cut(s)	455
BstV1I	GCAGC	2 cut(s)	357, 395
BstX2I	RGATCY	1 cut(s)	542
BstYI	RGATCY	1 cut(s)	542
BstZI	CGGCCG	1 cut(s)	456
Bsu15I	ATCGAT	1 cut(s)	741
Bsu36I	CCTNAGG	1 cut(s)	585
BsuI	GTATCC	1 cut(s)	636
BsuRI	GGCC	4 cut(s)	268, 446, 458, 528
BsuTUI	ATCGAT	1 cut(s)	741
BtgI	CCRYGG	1 cut(s)	453
Cac8I	GCNNGC	2 cut(s)	25, 731
CciI	TCATGA	1 cut(s)	250
CciNI	GCGGCCGC	1 cut(s)	456
CfoI	GCGC	1 cut(s)	675
Cfr13I	GGNCC	2 cut(s)	267, 527
Cfr42I	CCGCGG	1 cut(s)	456
Cfr9I	CCCGGG	1 cut(s)	601
ClaI	ATCGAT	1 cut(s)	741
CseI	GACGC	2 cut(s)	13, 604
Csp6I	GTAC	2 cut(s)	317, 724
CviAII	CATG	5 cut(s)	24, 63, 71, 251, 349
CviJI	RGCY	9 cut(s)	18, 268, 296, 304, 408, 446, 458, 528, 710
CviKI_1	RGCY	9 cut(s)	18, 268, 296, 304, 408, 446, 458, 528, 710
CviQI	GTAC	2 cut(s)	317, 724
DdeI	CTNAG	2 cut(s)	299, 585
DpnI	GATC	7 cut(s)	59, 249, 255, 498, 544, 740, 744
DpnII	GATC	7 cut(s)	57, 247, 253, 496, 542, 738, 742
EaeI	YGGCCR	2 cut(s)	444, 456
EagI	CGGCCG	1 cut(s)	456
EclXI	CGGCCG	1 cut(s)	456
Eco52I	CGGCCG	1 cut(s)	456
Eco57I	CTGAAG	1 cut(s)	542
Eco72I	CACGTG	2 cut(s)	371, 789
Eco81I	CCTNAGG	1 cut(s)	585
Eco88I	CYCGRG	1 cut(s)	601
EcoT22I	ATGCAT	2 cut(s)	29, 68
Esp3I	CGTCTC	1 cut(s)	587
FaeI	CATG	5 cut(s)	27, 66, 74, 254, 352
FaqI	GGGAC	1 cut(s)	622
FatI	CATG	5 cut(s)	23, 62, 70, 250, 348
FauNDI	CATATG	1 cut(s)	333
FbaI	TGATCA	1 cut(s)	247
Fnu4HI	GCNGC	4 cut(s)	346, 409, 456, 459
Fsp4HI	GCNGC	4 cut(s)	346, 409, 456, 459
FspAI	RTGCGCAY	1 cut(s)	674
FspBI	CTAG	1 cut(s)	293
FspI	TGCGCA	1 cut(s)	674
GlaI	GCGC	1 cut(s)	674
GluI	GCNGC	4 cut(s)	346, 409, 456, 459
HaeIII	GGCC	4 cut(s)	268, 446, 458, 528
HapII	CCGG	1 cut(s)	602
HgaI	GACGC	2 cut(s)	13, 604
HhaI	GCGC	1 cut(s)	675
Hin1II	CATG	5 cut(s)	27, 66, 74, 254, 352
Hin6I	GCGC	1 cut(s)	673
HinP1I	GCGC	1 cut(s)	673
HincII	GTYRAC	1 cut(s)	173
HindII	GTYRAC	1 cut(s)	173
HinfI	GANTC	4 cut(s)	375, 481, 572, 776
HpaII	CCGG	1 cut(s)	602
HphI	GGTGA	1 cut(s)	318
Hpy166II	GTNNAC	2 cut(s)	173, 374
Hpy188I	TCNGA	4 cut(s)	33, 469, 515, 550
Hpy188III	TCNNGA	4 cut(s)	251, 502, 560, 773
Hpy8I	GTNNAC	2 cut(s)	173, 374
HpyAV	CCTTC	4 cut(s)	38, 346, 659, 741
HpyCH4III	ACNGT	1 cut(s)	245
HpyCH4IV	ACGT	2 cut(s)	370, 788
HpyCH4V	TGCA	5 cut(s)	27, 66, 358, 411, 686
HpyF10VI	GCNNNNNNNGC	4 cut(s)	24, 417, 452, 726
HpyF3I	CTNAG	2 cut(s)	299, 585
HpySE526I	ACGT	2 cut(s)	370, 788
Hsp92II	CATG	5 cut(s)	27, 66, 74, 254, 352
HspAI	GCGC	1 cut(s)	673
Ksp22I	TGATCA	1 cut(s)	247
KspI	CCGCGG	1 cut(s)	456
Kzo9I	GATC	7 cut(s)	57, 247, 253, 496, 542, 738, 742
LmnI	GCTCC	3 cut(s)	382, 439, 493
Lsp1109I	GCAGC	2 cut(s)	357, 395
LweI	GCATC	1 cut(s)	367
MaeI	CTAG	1 cut(s)	293
MaeII	ACGT	2 cut(s)	370, 788
MaeIII	GTNAC	1 cut(s)	230
MalI	GATC	7 cut(s)	59, 249, 255, 498, 544, 740, 744
MboI	GATC	7 cut(s)	57, 247, 253, 496, 542, 738, 742
MboII	GAAGA	4 cut(s)	248, 537, 548, 577
MflI	RGATCY	1 cut(s)	542
MhlI	GDGCHC	1 cut(s)	387
MlsI	TGGCCA	1 cut(s)	446
MluCI	AATT	2 cut(s)	51, 279
MluNI	TGGCCA	1 cut(s)	446
MlyI	GAGTC	2 cut(s)	369, 475
MmeI	TCCRAC	1 cut(s)	492
MnlI	CCTC	9 cut(s)	191, 225, 280, 403, 407, 438, 475, 594, 599
Mox20I	TGGCCA	1 cut(s)	446
Mph1103I	ATGCAT	2 cut(s)	29, 68
MscI	TGGCCA	1 cut(s)	446
MseI	TTAA	1 cut(s)	237
MslI	CAYNNNNRTG	1 cut(s)	353
Msp20I	TGGCCA	1 cut(s)	446
MspA1I	CMGCKG	1 cut(s)	455
MspI	CCGG	1 cut(s)	602
MspR9I	CCNGG	2 cut(s)	602, 603
Mva1269I	GAATGC	2 cut(s)	27, 675
MvnI	CGCG	1 cut(s)	455
MwoI	GCNNNNNNNGC	4 cut(s)	24, 417, 452, 726
NciI	CCSGG	2 cut(s)	602, 603
NdeI	CATATG	1 cut(s)	333
NdeII	GATC	7 cut(s)	57, 247, 253, 496, 542, 738, 742
NlaIII	CATG	5 cut(s)	27, 66, 74, 254, 352
NlaIV	GGNNCC	3 cut(s)	529, 620, 771
NmuCI	GTSAC	1 cut(s)	230
NotI	GCGGCCGC	1 cut(s)	456
NsbI	TGCGCA	1 cut(s)	674
NsiI	ATGCAT	2 cut(s)	29, 68
NspI	RCATGY	2 cut(s)	27, 74
PaeI	GCATGC	1 cut(s)	27
PagI	TCATGA	1 cut(s)	250
PciI	ACATGT	1 cut(s)	70
PcsI	WCGNNNNNNNCGW	1 cut(s)	492
PctI	GAATGC	2 cut(s)	27, 675
PfeI	GAWTC	2 cut(s)	572, 776
PkrI	GCNGC	4 cut(s)	347, 410, 457, 460
Ple19I	CGATCG	1 cut(s)	745
PleI	GAGTC	2 cut(s)	369, 475
PmaCI	CACGTG	2 cut(s)	371, 789
PmlI	CACGTG	2 cut(s)	371, 789
PpsI	GAGTC	2 cut(s)	369, 475
Ppu21I	YACGTR	2 cut(s)	371, 789
PscI	ACATGT	1 cut(s)	70
PspCI	CACGTG	2 cut(s)	371, 789
PspN4I	GGNNCC	3 cut(s)	529, 620, 771
PspPI	GGNCC	2 cut(s)	267, 527
PsuI	RGATCY	1 cut(s)	542
PvuI	CGATCG	1 cut(s)	745
RsaI	GTAC	2 cut(s)	318, 725
RsaNI	GTAC	2 cut(s)	317, 724
RseI	CAYNNNNRTG	1 cut(s)	353
SacII	CCGCGG	1 cut(s)	456
SaqAI	TTAA	1 cut(s)	237
SatI	GCNGC	4 cut(s)	346, 409, 456, 459
Sau3AI	GATC	7 cut(s)	57, 247, 253, 496, 542, 738, 742
Sau96I	GGNCC	2 cut(s)	267, 527
ScaI	AGTACT	1 cut(s)	318
SchI	GAGTC	2 cut(s)	369, 475
ScrFI	CCNGG	2 cut(s)	602, 603
SduI	GDGCHC	1 cut(s)	387
SfaNI	GCATC	1 cut(s)	367
Sfr303I	CCGCGG	1 cut(s)	456
SgrBI	CCGCGG	1 cut(s)	456
SmaI	CCCGGG	1 cut(s)	603
SmiMI	CAYNNNNRTG	1 cut(s)	353
SmlI	CTYRAG	1 cut(s)	500
SmoI	CTYRAG	1 cut(s)	500
SphI	GCATGC	1 cut(s)	27
Sse9I	AATT	2 cut(s)	51, 279
SsiI	CCGC	4 cut(s)	176, 453, 455, 459
SspMI	CTAG	1 cut(s)	293
StyD4I	CCNGG	2 cut(s)	600, 601
TaaI	ACNGT	1 cut(s)	245
TaiI	ACGT	2 cut(s)	373, 791
TaqI	TCGA	4 cut(s)	49, 495, 741, 745
TasI	AATT	2 cut(s)	51, 279
TatI	WGTACW	1 cut(s)	316
TauI	GCSGC	2 cut(s)	458, 461
TfiI	GAWTC	2 cut(s)	572, 776
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TseFI	GTSAC	1 cut(s)	230
TseI	GCWGC	2 cut(s)	345, 408
Tsp45I	GTSAC	1 cut(s)	230
TspDTI	ATGAA	3 cut(s)	133, 365, 499
TspMI	CCCGGG	1 cut(s)	601
XceI	RCATGY	2 cut(s)	27, 74
XmaI	CCCGGG	1 cut(s)	601
XspI	CTAG	1 cut(s)	293
ZrmI	AGTACT	1 cut(s)	318
Zsp2I	ATGCAT	2 cut(s)	29, 68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.