Prupe.1G432100_v2.0.a1

WUSCHEL-related homeobox

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0012231
Physical Location & Seq
Forward (+)
37002438 .. 37004290
1853 bp
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UTR
Exon/CDS
Intron
Prupe.1G432100.1

Sequence Viewer

Length: 690 bp
ATGGGAATAAGCAGCATGAAGGTGCACCAGTTCGCACGTGGACTCTGGGAACACGAACCCTCCCTCACTCTTGGCTGCACCAAACGCCTACGCCCTCTCGCTCCCAAACTGGCCAACACCACCGCAGGCGACACCACTACCACTGCCCTTGCTCCTTTCGACCTCAAGAGCTTCATCAGACCTGAAAGTGGCCCTAGAAAACTAGGATCCTCTGATCATCAGGAGAAGAAAGATTCCCCCCACCCCCAGGTGGAGACGCACCCAGGAGGGACGCGTTGGAACCCAACGCAAGAACAGATAGGAATACTAGAAATGCTGTATAGGGGAGGCATGCGCACTCCTAATGCACAACAAATAGAACAAATAACAGCTCAGCTTGGCAAGTACGGCAAGATAGAGGGCAAGAATGTGTTTTACTGGTTCCAAAACCACAAAGCACGCGAGAGGCAGAAGCAAAAACGCAACAGCCTCGGCCTCAGCCATTCTCCCAGAACACCAACTCCTGTAATTACCAACCTGGGAGAAGTAGTAGGGGAAAGAGAGGAAGATAGTCCGTACAAGAGAAAGTGTAGGAGCTGGGGATTTGATTGCTCGGTAGAAGATAGTGTAGTTTGTAAGGCGGACGAAGTCGTGGAGGGAGGTAGAGGTAGAACTTTGGAGCTCTTCCCATTACATCCGGAAGGGAGATGA

Protein Analysis

230

Amino Acids

25.73

Weight (kDa)

9.3

Isoelectric Point (pI)

49.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012231)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G46480 AT1G46480
fragaria_vesca FvH4_2g34030 FvH4_2g34030
malus_domestica MD08G1096300.v1.1 MD15G1079000.v1.1
prunus_persica Prupe.1G432100_v2.0.a1
pyrus_communis pycom08g07830 pycom15g07360
rosa_chinensis RchiOBHm_Chr6g0308351
rosa_laevigata RLG00000010648
rosa_multiflora Rmu_sc0005523.1_g000011
rosa_roxburghii Rroxscaffold_7G00160220
rosa_rugosa Rorug06G0366200
rosa_samantha Rh6AG475500 Rh6BG485900 Rh6CG491100 Rh6DG477400
rosa_wichuraiana Rw6G041450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 335
AccII CGCG 2 cut(s) 274, 441
AccIII TCCGGA 1 cut(s) 676
AciI CCGC 2 cut(s) 123, 620
AclWI GGATC 2 cut(s) 201, 214
AcoI YGGCCR 1 cut(s) 111
AcvI CACGTG 1 cut(s) 38
AfaI GTAC 2 cut(s) 386, 557
AfiI CCNNNNNNNGG 3 cut(s) 188, 247, 250
AflIII ACRYGT 1 cut(s) 272
AjnI CCWGG 3 cut(s) 246, 262, 516
AloI GAACNNNNNNTCC 2 cut(s) 484, 516
AluBI AGCT 5 cut(s) 171, 371, 376, 576, 661
AluI AGCT 5 cut(s) 171, 371, 376, 576, 661
Alw21I GWGCWC 2 cut(s) 27, 663
Alw26I GTCTC 1 cut(s) 248
Alw44I GTGCAC 1 cut(s) 23
AlwI GGATC 2 cut(s) 201, 214
Aor13HI TCCGGA 1 cut(s) 676
AoxI GGCC 3 cut(s) 111, 190, 472
ApaLI GTGCAC 1 cut(s) 23
ApeKI GCWGC 2 cut(s) 12, 75
AspLEI GCGC 1 cut(s) 336
AspS9I GGNCC 1 cut(s) 191
BaeGI GKGCMC 1 cut(s) 27
BalI TGGCCA 1 cut(s) 113
BamHI GGATCC 1 cut(s) 206
BanII GRGCYC 1 cut(s) 663
BbrPI CACGTG 1 cut(s) 38
Bbv12I GWGCWC 2 cut(s) 27, 663
BbvCI CCTCAGC 1 cut(s) 476
BbvI GCAGC 2 cut(s) 24, 62
BceAI ACGGC 1 cut(s) 403
BcgI CGANNNNNNTGC 2 cut(s) 451, 485
BciT130I CCWGG 3 cut(s) 248, 264, 518
BclI TGATCA 1 cut(s) 214
BcoDI GTCTC 1 cut(s) 248
BfaI CTAG 3 cut(s) 195, 203, 308
BisI GCNGC 2 cut(s) 13, 76
BlpI GCTNAGC 1 cut(s) 372
BlsI GCNGC 2 cut(s) 14, 77
Bme1390I CCNGG 3 cut(s) 248, 264, 518
BmgT120I GGNCC 1 cut(s) 191
BmiI GGNNCC 3 cut(s) 208, 281, 422
BmrFI CCNGG 3 cut(s) 248, 264, 518
Bpu10I CCTNAGC 1 cut(s) 476
Bpu1102I GCTNAGC 1 cut(s) 372
BpuEI CTTGAG 1 cut(s) 149
BsaAI YACGTR 1 cut(s) 38
BsaJI CCNNGG 4 cut(s) 246, 262, 469, 517
BsaWI WCCGGW 1 cut(s) 676
BsaXI ACNNNNNCTCC 6 cut(s) 44, 74, 484, 513, 514, 543
Bsc4I CCNNNNNNNGG 3 cut(s) 188, 247, 250
Bse1I ACTGG 3 cut(s) 28, 114, 422
BseAI TCCGGA 1 cut(s) 676
BseBI CCWGG 3 cut(s) 248, 264, 518
BseDI CCNNGG 4 cut(s) 246, 262, 469, 517
BseGI GGATG 1 cut(s) 673
BseLI CCNNNNNNNGG 3 cut(s) 188, 247, 250
BseMII CTCAG 2 cut(s) 386, 490
BseNI ACTGG 3 cut(s) 28, 114, 422
BseSI GKGCMC 1 cut(s) 27
BseXI GCAGC 2 cut(s) 24, 62
BseYI CCCAGC 1 cut(s) 576
BsgI GTGCAG 1 cut(s) 61
Bsh1236I CGCG 2 cut(s) 274, 441
BshFI GGCC 3 cut(s) 113, 192, 474
BsiHKAI GWGCWC 2 cut(s) 27, 663
BsiSI CCGG 1 cut(s) 677
BslFI GGGAC 1 cut(s) 283
BslI CCNNNNNNNGG 3 cut(s) 188, 247, 250
BsmAI GTCTC 1 cut(s) 248
BsmBI CGTCTC 1 cut(s) 248
BsmFI GGGAC 1 cut(s) 283
BsnI GGCC 3 cut(s) 113, 192, 474
Bsp1286I GDGCHC 2 cut(s) 27, 663
Bsp13I TCCGGA 1 cut(s) 676
Bsp143I GATC 2 cut(s) 206, 214
Bsp1720I GCTNAGC 1 cut(s) 372
BspACI CCGC 2 cut(s) 123, 620
BspANI GGCC 3 cut(s) 113, 192, 474
BspCNI CTCAG 2 cut(s) 385, 489
BspEI TCCGGA 1 cut(s) 676
BspFNI CGCG 2 cut(s) 274, 441
BspLI GGNNCC 3 cut(s) 208, 281, 422
BspPI GGATC 2 cut(s) 201, 214
BspQI GCTCTTC 1 cut(s) 668
BsrI ACTGG 3 cut(s) 28, 114, 422
BssECI CCNNGG 4 cut(s) 246, 262, 469, 517
BssMI GATC 2 cut(s) 206, 214
Bst2UI CCWGG 3 cut(s) 248, 264, 518
Bst6I CTCTTC 1 cut(s) 668
BstBAI YACGTR 1 cut(s) 38
BstC8I GCNNGC 3 cut(s) 127, 332, 439
BstDEI CTNAG 2 cut(s) 372, 476
BstF5I GGATG 1 cut(s) 673
BstFNI CGCG 2 cut(s) 274, 441
BstHHI GCGC 1 cut(s) 336
BstKTI GATC 2 cut(s) 209, 217
BstMAI GTCTC 1 cut(s) 248
BstMBI GATC 2 cut(s) 206, 214
BstMWI GCNNNNNNNGC 2 cut(s) 84, 387
BstNI CCWGG 3 cut(s) 248, 264, 518
BstNSI RCATGY 1 cut(s) 334
BstSCI CCNGG 3 cut(s) 246, 262, 516
BstSLI GKGCMC 1 cut(s) 27
BstUI CGCG 2 cut(s) 274, 441
BstV1I GCAGC 2 cut(s) 24, 62
BstX2I RGATCY 1 cut(s) 206
BstYI RGATCY 1 cut(s) 206
BsuRI GGCC 3 cut(s) 113, 192, 474
BtsCI GGATG 1 cut(s) 673
BtsI GCAGTG 1 cut(s) 141
BtsIMutI CAGTG 1 cut(s) 141
Cac8I GCNNGC 3 cut(s) 127, 332, 439
CfoI GCGC 1 cut(s) 336
Cfr13I GGNCC 1 cut(s) 191
CseI GACGC 2 cut(s) 265, 280
Csp6I GTAC 2 cut(s) 385, 556
CspCI CAANNNNNGTGG 2 cut(s) 130, 165
CviAII CATG 2 cut(s) 16, 331
CviQI GTAC 2 cut(s) 385, 556
DdeI CTNAG 2 cut(s) 372, 476
DpnI GATC 2 cut(s) 208, 216
DpnII GATC 2 cut(s) 206, 214
EaeI YGGCCR 1 cut(s) 111
Eam1104I CTCTTC 1 cut(s) 668
EarI CTCTTC 1 cut(s) 668
EciI GGCGGA 1 cut(s) 635
Ecl136II GAGCTC 1 cut(s) 661
Eco24I GRGCYC 1 cut(s) 663
Eco53kI GAGCTC 1 cut(s) 661
Eco72I CACGTG 1 cut(s) 38
EcoICRI GAGCTC 1 cut(s) 661
EcoRII CCWGG 3 cut(s) 246, 262, 516
EcoT38I GRGCYC 1 cut(s) 663
Esp3I CGTCTC 1 cut(s) 248
FaeI CATG 2 cut(s) 19, 334
FaiI YATR 3 cut(s) 17, 321, 332
FaqI GGGAC 1 cut(s) 283
FatI CATG 2 cut(s) 15, 330
FbaI TGATCA 1 cut(s) 214
Fnu4HI GCNGC 2 cut(s) 13, 76
FokI GGATG 1 cut(s) 660
FriOI GRGCYC 1 cut(s) 663
Fsp4HI GCNGC 2 cut(s) 13, 76
FspAI RTGCGCAY 1 cut(s) 335
FspBI CTAG 3 cut(s) 195, 203, 308
FspI TGCGCA 1 cut(s) 335
GlaI GCGC 1 cut(s) 335
GluI GCNGC 2 cut(s) 13, 76
GsaI CCCAGC 1 cut(s) 580
HaeIII GGCC 3 cut(s) 113, 192, 474
HapII CCGG 1 cut(s) 677
HgaI GACGC 2 cut(s) 265, 280
HhaI GCGC 1 cut(s) 336
Hin1II CATG 2 cut(s) 19, 334
Hin6I GCGC 1 cut(s) 334
HinP1I GCGC 1 cut(s) 334
HinfI GANTC 2 cut(s) 42, 233
HpaII CCGG 1 cut(s) 677
Hpy166II GTNNAC 2 cut(s) 25, 41
Hpy188I TCNGA 2 cut(s) 179, 214
Hpy188III TCNNGA 3 cut(s) 166, 221, 677
Hpy8I GTNNAC 2 cut(s) 25, 41
HpyAV CCTTC 2 cut(s) 13, 674
HpyCH4IV ACGT 1 cut(s) 37
HpyCH4V TGCA 3 cut(s) 25, 78, 347
HpyF10VI GCNNNNNNNGC 2 cut(s) 84, 387
HpyF3I CTNAG 2 cut(s) 372, 476
HpySE526I ACGT 1 cut(s) 37
Hsp92II CATG 2 cut(s) 19, 334
HspAI GCGC 1 cut(s) 334
Kpn2I TCCGGA 1 cut(s) 676
Ksp22I TGATCA 1 cut(s) 214
Kzo9I GATC 2 cut(s) 206, 214
LguI GCTCTTC 1 cut(s) 668
LmnI GCTCC 4 cut(s) 106, 157, 573, 658
Lsp1109I GCAGC 2 cut(s) 24, 62
MaeI CTAG 3 cut(s) 195, 203, 308
MaeII ACGT 1 cut(s) 37
MalI GATC 2 cut(s) 208, 216
MboI GATC 2 cut(s) 206, 214
MboII GAAGA 4 cut(s) 238, 557, 611, 655
MflI RGATCY 1 cut(s) 206
MhlI GDGCHC 2 cut(s) 27, 663
MlsI TGGCCA 1 cut(s) 113
MluCI AATT 1 cut(s) 507
MluI ACGCGT 1 cut(s) 272
MluNI TGGCCA 1 cut(s) 113
MlyI GAGTC 1 cut(s) 36
MmeI TCCRAC 1 cut(s) 257
Mox20I TGGCCA 1 cut(s) 113
MroI TCCGGA 1 cut(s) 676
MscI TGGCCA 1 cut(s) 113
MslI CAYNNNNRTG 1 cut(s) 20
Msp20I TGGCCA 1 cut(s) 113
MspI CCGG 1 cut(s) 677
MspR9I CCNGG 3 cut(s) 248, 264, 518
MvaI CCWGG 3 cut(s) 248, 264, 518
MvnI CGCG 2 cut(s) 274, 441
MwoI GCNNNNNNNGC 2 cut(s) 84, 387
NdeII GATC 2 cut(s) 206, 214
NlaIII CATG 2 cut(s) 19, 334
NlaIV GGNNCC 3 cut(s) 208, 281, 422
NmeAIII GCCGAG 1 cut(s) 450
NsbI TGCGCA 1 cut(s) 335
NspI RCATGY 1 cut(s) 334
PaeI GCATGC 1 cut(s) 334
PciSI GCTCTTC 1 cut(s) 668
PfeI GAWTC 1 cut(s) 233
PflFI GACNNNGTC 1 cut(s) 626
PkrI GCNGC 2 cut(s) 14, 77
PleI GAGTC 1 cut(s) 36
PmaCI CACGTG 1 cut(s) 38
PmlI CACGTG 1 cut(s) 38
PpsI GAGTC 1 cut(s) 36
Ppu21I YACGTR 1 cut(s) 38
Psp124BI GAGCTC 1 cut(s) 663
Psp6I CCWGG 3 cut(s) 246, 262, 516
PspCI CACGTG 1 cut(s) 38
PspFI CCCAGC 1 cut(s) 576
PspGI CCWGG 3 cut(s) 246, 262, 516
PspN4I GGNNCC 3 cut(s) 208, 281, 422
PspPI GGNCC 1 cut(s) 191
PsuI RGATCY 1 cut(s) 206
PsyI GACNNNGTC 1 cut(s) 626
RsaI GTAC 2 cut(s) 386, 557
RsaNI GTAC 2 cut(s) 385, 556
RseI CAYNNNNRTG 1 cut(s) 20
SacI GAGCTC 1 cut(s) 663
SapI GCTCTTC 1 cut(s) 668
SatI GCNGC 2 cut(s) 13, 76
Sau3AI GATC 2 cut(s) 206, 214
Sau96I GGNCC 1 cut(s) 191
SchI GAGTC 1 cut(s) 36
ScrFI CCNGG 3 cut(s) 248, 264, 518
SduI GDGCHC 2 cut(s) 27, 663
SmiMI CAYNNNNRTG 1 cut(s) 20
SmlI CTYRAG 1 cut(s) 164
SmoI CTYRAG 1 cut(s) 164
SphI GCATGC 1 cut(s) 334
Sse9I AATT 1 cut(s) 507
SsiI CCGC 2 cut(s) 123, 620
SspMI CTAG 3 cut(s) 195, 203, 308
SstI GAGCTC 1 cut(s) 663
StyD4I CCNGG 3 cut(s) 246, 262, 516
TaiI ACGT 1 cut(s) 40
TaqI TCGA 1 cut(s) 159
TasI AATT 1 cut(s) 507
TfiI GAWTC 1 cut(s) 233
TscAI CASTG 1 cut(s) 148
TseI GCWGC 2 cut(s) 12, 75
TspDTI ATGAA 2 cut(s) 32, 163
TspGWI ACGGA 1 cut(s) 543
TspRI CASTG 1 cut(s) 148
Tth111I GACNNNGTC 1 cut(s) 626
VneI GTGCAC 1 cut(s) 23
XceI RCATGY 1 cut(s) 334
XcmI CCANNNNNNNNNTGG 1 cut(s) 35
XspI CTAG 3 cut(s) 195, 203, 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.