Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009924

Physical Location & Seq

Genomic Coordinates Reverse (-)

17265586 .. 17266824

Gene Structure 1239 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G46768.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGAAAGAGAACAAGAAGAGTCTACGATGAGAAAGAGAAGGCAGCCACCTCAAGAAGAAGTGCCTAACCACGTGGCTACAAGGAAGCCGTACAGAGGGATACGGAGGAGGAAGTGGGGCAAGTGGGTGGCTGAGATTCGTGAGCCTAACAAACGCTCACGGCTTTGGCTTGGCTCTTACACAACCGATATCGCCGCCGCTAGAGCCTACGACGTGGCCGTCTTCTACCTCCGTGGCCCCTCCGCACGTCTCAACTTCCCTGATCTTCTCTTGCAAGAAGAGGACCATCTCTCAGCCGCCACCACCGCTGACATGCCCGCAGCTCTTATAAGGGAAAAAGCGGCGGAGGTCGGCGCCAGAGTCGACGCTCTTCTAGCTTCTGCCGCTCCTTCGATGGCTCACTCCACTCCGCCGGTAATAAAACCCGACTTGAATCAAATACCCGAATCCGGAGATATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

153

Amino Acids

17.24

Weight (kDa)

9.34

Isoelectric Point (pI)

65.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	31 - 79	7.6e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009924)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G46768 AT1G46768 AT1G46768 AT4G06746
fragaria_vesca	FvH4_2g34020
malus_domestica	MD08G1096000.v1.1 MD15G1078900.v1.1
prunus_persica	Prupe.1G432000_v2.0.a1
pyrus_communis	pycom08g07820 pycom15g07350
rosa_chinensis	RchiOBHm_Chr6g0308371
rosa_laevigata	RLG00000010647
rosa_multiflora	Rmu_sc0005523.1_g000015
rosa_roxburghii	Rroxscaffold_7G00160190
rosa_rugosa	Rorug06G0366300 Rorug06G0366400
rosa_samantha	Rh6AG475700 Rh6BG486000 Rh6CG491200 Rh6DG477500
rosa_wichuraiana	Rw6G041460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	329
AasI	GACNNNNNNGTC	1 cut(s)	218
AccB1I	GGYRCC	1 cut(s)	353
AccBSI	CCGCTC	1 cut(s)	386
AccI	GTMKAC	2 cut(s)	23, 363
AccIII	TCCGGA	1 cut(s)	449
AcoI	YGGCCR	1 cut(s)	216
AcvI	CACGTG	1 cut(s)	73
AcyI	GRCGYC	1 cut(s)	354
AfaI	GTAC	1 cut(s)	92
AfiI	CCNNNNNNNGG	2 cut(s)	95, 449
AgsI	TTSAA	1 cut(s)	433
AjiI	CACGTC	2 cut(s)	214, 248
AluBI	AGCT	2 cut(s)	323, 377
AluI	AGCT	2 cut(s)	323, 377
Alw26I	GTCTC	1 cut(s)	254
Aor13HI	TCCGGA	1 cut(s)	449
AoxI	GGCC	2 cut(s)	216, 235
ApeKI	GCWGC	2 cut(s)	43, 320
AspLEI	GCGC	1 cut(s)	356
AspS9I	GGNCC	2 cut(s)	236, 283
AvaII	GGWCC	1 cut(s)	283
BanI	GGYRCC	1 cut(s)	353
BbrPI	CACGTG	1 cut(s)	73
BbsI	GAAGAC	1 cut(s)	214
BbvI	GCAGC	2 cut(s)	55, 332
BccI	CCATC	2 cut(s)	294, 388
BceAI	ACGGC	3 cut(s)	73, 176, 203
BciVI	GTATCC	1 cut(s)	93
BcoDI	GTCTC	1 cut(s)	254
BfaI	CTAG	2 cut(s)	201, 374
BfoI	RGCGCY	1 cut(s)	357
BfuI	GTATCC	1 cut(s)	93
BisI	GCNGC	7 cut(s)	44, 195, 198, 297, 321, 342, 384
BlsI	GCNGC	7 cut(s)	45, 196, 199, 298, 322, 343, 385
Bme18I	GGWCC	1 cut(s)	283
BmgBI	CACGTC	2 cut(s)	214, 248
BmgT120I	GGNCC	2 cut(s)	236, 283
BmiI	GGNNCC	2 cut(s)	238, 355
BpiI	GAAGAC	1 cut(s)	214
BpuEI	CTTGAG	1 cut(s)	36
BsaAI	YACGTR	1 cut(s)	73
BsaHI	GRCGYC	1 cut(s)	354
BsaJI	CCNNGG	1 cut(s)	232
BsaWI	WCCGGW	1 cut(s)	449
Bsc4I	CCNNNNNNNGG	2 cut(s)	95, 449
Bse118I	RCCGGY	1 cut(s)	412
BseAI	TCCGGA	1 cut(s)	449
BseDI	CCNNGG	1 cut(s)	232
BseLI	CCNNNNNNNGG	2 cut(s)	95, 449
BseMII	CTCAG	2 cut(s)	123, 306
BseRI	GAGGAG	1 cut(s)	121
BseXI	GCAGC	2 cut(s)	55, 332
BshFI	GGCC	2 cut(s)	218, 237
BshNI	GGYRCC	1 cut(s)	353
BsiSI	CCGG	2 cut(s)	413, 450
BslI	CCNNNNNNNGG	2 cut(s)	95, 449
BsmAI	GTCTC	1 cut(s)	254
BsmBI	CGTCTC	1 cut(s)	254
BsnI	GGCC	2 cut(s)	218, 237
Bsp13I	TCCGGA	1 cut(s)	449
Bsp143I	GATC	1 cut(s)	262
BspANI	GGCC	2 cut(s)	218, 237
BspCNI	CTCAG	2 cut(s)	124, 305
BspEI	TCCGGA	1 cut(s)	449
BspLI	GGNNCC	2 cut(s)	238, 355
BspQI	GCTCTTC	1 cut(s)	375
BspT107I	GGYRCC	1 cut(s)	353
BsrBI	CCGCTC	1 cut(s)	386
BsrFI	RCCGGY	1 cut(s)	412
BssAI	RCCGGY	1 cut(s)	412
BssECI	CCNNGG	1 cut(s)	232
BssMI	GATC	1 cut(s)	262
BssNI	GRCGYC	1 cut(s)	354
Bst6I	CTCTTC	3 cut(s)	12, 273, 375
BstACI	GRCGYC	1 cut(s)	354
BstBAI	YACGTR	1 cut(s)	73
BstC8I	GCNNGC	1 cut(s)	318
BstDEI	CTNAG	2 cut(s)	132, 292
BstDSI	CCRYGG	1 cut(s)	232
BstH2I	RGCGCY	1 cut(s)	357
BstHHI	GCGC	1 cut(s)	356
BstKTI	GATC	1 cut(s)	265
BstMAI	GTCTC	1 cut(s)	254
BstMBI	GATC	1 cut(s)	262
BstMWI	GCNNNNNNNGC	4 cut(s)	203, 305, 374, 383
BstNSI	RCATGY	1 cut(s)	316
BstV1I	GCAGC	2 cut(s)	55, 332
BstV2I	GAAGAC	1 cut(s)	214
BsuI	GTATCC	1 cut(s)	93
BsuRI	GGCC	2 cut(s)	218, 237
BtgI	CCRYGG	1 cut(s)	232
BtrI	CACGTC	2 cut(s)	214, 248
Cac8I	GCNNGC	1 cut(s)	318
CfoI	GCGC	1 cut(s)	356
Cfr10I	RCCGGY	1 cut(s)	412
Cfr13I	GGNCC	2 cut(s)	236, 283
CseI	GACGC	1 cut(s)	374
Csp6I	GTAC	1 cut(s)	91
CviAII	CATG	1 cut(s)	313
CviQI	GTAC	1 cut(s)	91
DdeI	CTNAG	2 cut(s)	132, 292
DinI	GGCGCC	1 cut(s)	355
DpnI	GATC	1 cut(s)	264
DpnII	GATC	1 cut(s)	262
DrdI	GACNNNNNNGTC	1 cut(s)	218
DseDI	GACNNNNNNGTC	1 cut(s)	218
EaeI	YGGCCR	1 cut(s)	216
Eam1104I	CTCTTC	3 cut(s)	12, 273, 375
EarI	CTCTTC	3 cut(s)	12, 273, 375
EciI	GGCGGA	2 cut(s)	359, 399
Eco32I	GATATC	1 cut(s)	190
Eco47I	GGWCC	1 cut(s)	283
Eco72I	CACGTG	1 cut(s)	73
EcoRV	GATATC	1 cut(s)	190
EgeI	GGCGCC	1 cut(s)	355
EheI	GGCGCC	1 cut(s)	355
Esp3I	CGTCTC	1 cut(s)	254
FaeI	CATG	1 cut(s)	316
FaiI	YATR	4 cut(s)	314, 329, 458, 460
FatI	CATG	1 cut(s)	312
FauI	CCCGC	1 cut(s)	325
FblI	GTMKAC	2 cut(s)	23, 363
Fnu4HI	GCNGC	7 cut(s)	44, 195, 198, 297, 321, 342, 384
Fsp4HI	GCNGC	7 cut(s)	44, 195, 198, 297, 321, 342, 384
FspBI	CTAG	2 cut(s)	201, 374
GlaI	GCGC	1 cut(s)	355
GluI	GCNGC	7 cut(s)	44, 195, 198, 297, 321, 342, 384
HaeII	RGCGCY	1 cut(s)	357
HaeIII	GGCC	2 cut(s)	218, 237
HapII	CCGG	2 cut(s)	413, 450
HgaI	GACGC	1 cut(s)	374
HhaI	GCGC	1 cut(s)	356
Hin1I	GRCGYC	1 cut(s)	354
Hin1II	CATG	1 cut(s)	316
Hin6I	GCGC	1 cut(s)	354
HinP1I	GCGC	1 cut(s)	354
HincII	GTYRAC	1 cut(s)	364
HindII	GTYRAC	1 cut(s)	364
HinfI	GANTC	5 cut(s)	20, 136, 360, 433, 446
HpaII	CCGG	2 cut(s)	413, 450
Hpy166II	GTNNAC	2 cut(s)	24, 364
Hpy188III	TCNNGA	3 cut(s)	53, 140, 450
Hpy8I	GTNNAC	2 cut(s)	24, 364
Hpy99I	CGWCG	2 cut(s)	215, 368
HpyAV	CCTTC	2 cut(s)	33, 399
HpyCH4IV	ACGT	3 cut(s)	72, 213, 247
HpyCH4V	TGCA	1 cut(s)	274
HpyF10VI	GCNNNNNNNGC	4 cut(s)	203, 305, 374, 383
HpyF3I	CTNAG	2 cut(s)	132, 292
HpySE526I	ACGT	3 cut(s)	72, 213, 247
Hsp92I	GRCGYC	1 cut(s)	354
Hsp92II	CATG	1 cut(s)	316
HspAI	GCGC	1 cut(s)	354
KasI	GGCGCC	1 cut(s)	353
Kpn2I	TCCGGA	1 cut(s)	449
Kzo9I	GATC	1 cut(s)	262
LguI	GCTCTTC	1 cut(s)	375
LmnI	GCTCC	1 cut(s)	391
LpnPI	CCDG	3 cut(s)	273, 370, 426
Lsp1109I	GCAGC	2 cut(s)	55, 332
MaeI	CTAG	2 cut(s)	201, 374
MaeII	ACGT	3 cut(s)	72, 213, 247
MalI	GATC	1 cut(s)	264
MbiI	CCGCTC	1 cut(s)	386
MboI	GATC	1 cut(s)	262
MboII	GAAGA	6 cut(s)	29, 68, 214, 257, 290, 362
Mly113I	GGCGCC	1 cut(s)	354
MlyI	GAGTC	2 cut(s)	29, 369
MnlI	CCTC	8 cut(s)	60, 89, 99, 102, 239, 250, 274, 340
MroI	TCCGGA	1 cut(s)	449
MspA1I	CMGCKG	1 cut(s)	308
MspI	CCGG	2 cut(s)	413, 450
MwoI	GCNNNNNNNGC	4 cut(s)	203, 305, 374, 383
NarI	GGCGCC	1 cut(s)	354
NdeII	GATC	1 cut(s)	262
NlaIII	CATG	1 cut(s)	316
NlaIV	GGNNCC	2 cut(s)	238, 355
NspI	RCATGY	1 cut(s)	316
PciSI	GCTCTTC	1 cut(s)	375
PcsI	WCGNNNNNNNCGW	1 cut(s)	216
PfeI	GAWTC	3 cut(s)	136, 433, 446
PkrI	GCNGC	7 cut(s)	45, 196, 199, 298, 322, 343, 385
PleI	GAGTC	2 cut(s)	28, 368
PluTI	GGCGCC	1 cut(s)	357
PmaCI	CACGTG	1 cut(s)	73
PmlI	CACGTG	1 cut(s)	73
PpsI	GAGTC	2 cut(s)	28, 368
Ppu21I	YACGTR	1 cut(s)	73
PsiI	TTATAA	1 cut(s)	329
PspCI	CACGTG	1 cut(s)	73
PspN4I	GGNNCC	2 cut(s)	238, 355
PspPI	GGNCC	2 cut(s)	236, 283
RsaI	GTAC	1 cut(s)	92
RsaNI	GTAC	1 cut(s)	91
SalI	GTCGAC	1 cut(s)	362
SapI	GCTCTTC	1 cut(s)	375
SatI	GCNGC	7 cut(s)	44, 195, 198, 297, 321, 342, 384
Sau3AI	GATC	1 cut(s)	262
Sau96I	GGNCC	2 cut(s)	236, 283
SchI	GAGTC	2 cut(s)	29, 369
SetI	ASST	8 cut(s)	52, 75, 216, 231, 250, 325, 351, 379
SfoI	GGCGCC	1 cut(s)	355
SinI	GGWCC	1 cut(s)	283
SmlI	CTYRAG	1 cut(s)	51
SmoI	CTYRAG	1 cut(s)	51
SspDI	GGCGCC	1 cut(s)	353
SspMI	CTAG	2 cut(s)	201, 374
TaiI	ACGT	3 cut(s)	75, 216, 250
TaqI	TCGA	2 cut(s)	363, 392
TauI	GCSGC	5 cut(s)	197, 200, 299, 344, 386
TfiI	GAWTC	3 cut(s)	136, 433, 446
TseI	GCWGC	2 cut(s)	43, 320
TspGWI	ACGGA	2 cut(s)	118, 221
VpaK11BI	GGWCC	1 cut(s)	283
XceI	RCATGY	1 cut(s)	316
XmiI	GTMKAC	2 cut(s)	23, 363
XspI	CTAG	2 cut(s)	201, 374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.