Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0009924

Physical Location & Seq

Genomic Coordinates Forward (+)

25362442 .. 25364608

Gene Structure 2167 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g34020.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGAAGGAGAGTACAGTTGTTCGTCGTCGTCTTCTTCATCGACGACGACGAGCTTAGAGAAGCGCAAGAAGAGACAACACGAGCACGATGATCATAATAACCAGGAAAAGCCCTACAGAGGAATAAGGATGAGGAAGTGGGGCAAGTGGGTGGCCGAGATTAGAGAGCCTAACAAGCGCACCAGGATTTGGCTTGGTTCCTACACAACTCCTGTCGCCGCCGCCAGAGCCTACGACACCGCCGTTTTCTACCTCCGAGGACCTTCCGCGAGGCTCAACTTCCCGGAGTTGGTTTTCCAAGAAGGCCAGCTGCACGACATGTCGTCCGCCTCCATACGCAAGAAGGCCACCGAGGTTGGCACCAAAGTCGATGCTCTCCAAACCGCTCTCCGGTCGCCGTCGTCGCAGTCGAAAGTCGGTTCTCAGGTTAAGCCTGATTTGAACGAGTACCCGGACCCGGAAAACTCCGATGACAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

160

Amino Acids

18.02

Weight (kDa)

9.18

Isoelectric Point (pI)

53.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	39 - 87	7.2e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009924)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G46768 AT1G46768 AT1G46768 AT4G06746
fragaria_vesca	FvH4_2g34020
malus_domestica	MD08G1096000.v1.1 MD15G1078900.v1.1
prunus_persica	Prupe.1G432000_v2.0.a1
pyrus_communis	pycom08g07820 pycom15g07350
rosa_chinensis	RchiOBHm_Chr6g0308371
rosa_laevigata	RLG00000010647
rosa_multiflora	Rmu_sc0005523.1_g000015
rosa_roxburghii	Rroxscaffold_7G00160190
rosa_rugosa	Rorug06G0366300 Rorug06G0366400
rosa_samantha	Rh6AG475700 Rh6BG486000 Rh6CG491200 Rh6DG477500
rosa_wichuraiana	Rw6G041460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	359
AccB7I	CCANNNNNTGG	1 cut(s)	189
AccBSI	CCGCTC	1 cut(s)	386
AccII	CGCG	1 cut(s)	269
AciI	CCGC	6 cut(s)	219, 222, 240, 267, 327, 384
AcoI	YGGCCR	1 cut(s)	153
AfaI	GTAC	2 cut(s)	14, 449
AfiI	CCNNNNNNNGG	5 cut(s)	119, 189, 289, 390, 457
AflIII	ACRYGT	1 cut(s)	318
AgsI	TTSAA	1 cut(s)	442
AhdI	GACNNNNNGTC	1 cut(s)	322
AjnI	CCWGG	2 cut(s)	102, 182
AluBI	AGCT	2 cut(s)	54, 310
AluI	AGCT	2 cut(s)	54, 310
Alw21I	GWGCWC	1 cut(s)	87
Alw26I	GTCTC	1 cut(s)	67
AoxI	GGCC	3 cut(s)	153, 304, 345
ApeKI	GCWGC	1 cut(s)	310
AspLEI	GCGC	2 cut(s)	66, 180
AspS9I	GGNCC	2 cut(s)	260, 454
AsuC2I	CCSGG	3 cut(s)	284, 452, 458
AvaII	GGWCC	2 cut(s)	260, 454
BanI	GGYRCC	1 cut(s)	359
BauI	CACGAG	1 cut(s)	80
BbsI	GAAGAC	1 cut(s)	24
Bbv12I	GWGCWC	1 cut(s)	87
BbvI	GCAGC	1 cut(s)	297
BceAI	ACGGC	2 cut(s)	227, 382
BcgI	CGANNNNNNTGC	2 cut(s)	349, 383
BciT130I	CCWGG	2 cut(s)	104, 184
BclI	TGATCA	1 cut(s)	91
BcnI	CCSGG	3 cut(s)	284, 452, 458
BcoDI	GTCTC	1 cut(s)	67
BfmI	CTRYAG	1 cut(s)	115
BisI	GCNGC	3 cut(s)	219, 222, 311
BlsI	GCNGC	3 cut(s)	220, 223, 312
Bme1390I	CCNGG	5 cut(s)	104, 184, 284, 452, 458
Bme18I	GGWCC	2 cut(s)	260, 454
BmeRI	GACNNNNNGTC	1 cut(s)	322
BmgT120I	GGNCC	2 cut(s)	260, 454
BmiI	GGNNCC	3 cut(s)	199, 361, 456
BmrFI	CCNGG	5 cut(s)	104, 184, 284, 452, 458
BmsI	GCATC	1 cut(s)	361
BpiI	GAAGAC	1 cut(s)	24
BpuMI	CCSGG	3 cut(s)	284, 452, 458
BsaJI	CCNNGG	2 cut(s)	256, 351
BsaWI	WCCGGW	1 cut(s)	390
Bsc4I	CCNNNNNNNGG	5 cut(s)	119, 189, 289, 390, 457
BseBI	CCWGG	2 cut(s)	104, 184
BseDI	CCNNGG	2 cut(s)	256, 351
BseGI	GGATG	1 cut(s)	135
BseLI	CCNNNNNNNGG	5 cut(s)	119, 189, 289, 390, 457
BseMII	CTCAG	1 cut(s)	437
BseXI	GCAGC	1 cut(s)	297
BsgI	GTGCAG	1 cut(s)	296
Bsh1236I	CGCG	1 cut(s)	269
Bsh1285I	CGRYCG	1 cut(s)	395
BshFI	GGCC	3 cut(s)	155, 306, 347
BshNI	GGYRCC	1 cut(s)	359
BsiEI	CGRYCG	1 cut(s)	395
BsiHKAI	GWGCWC	1 cut(s)	87
BsiSI	CCGG	4 cut(s)	284, 391, 452, 458
BslI	CCNNNNNNNGG	5 cut(s)	119, 189, 289, 390, 457
BsmAI	GTCTC	1 cut(s)	67
BsnI	GGCC	3 cut(s)	155, 306, 347
Bsp1286I	GDGCHC	1 cut(s)	87
Bsp143I	GATC	1 cut(s)	91
BspACI	CCGC	6 cut(s)	219, 222, 240, 267, 327, 384
BspANI	GGCC	3 cut(s)	155, 306, 347
BspCNI	CTCAG	1 cut(s)	436
BspFNI	CGCG	1 cut(s)	269
BspLI	GGNNCC	3 cut(s)	199, 361, 456
BspT107I	GGYRCC	1 cut(s)	359
BsrBI	CCGCTC	1 cut(s)	386
BssECI	CCNNGG	2 cut(s)	256, 351
BssMI	GATC	1 cut(s)	91
BssSI	CACGAG	1 cut(s)	80
Bst2BI	CACGAG	1 cut(s)	80
Bst2UI	CCWGG	2 cut(s)	104, 184
Bst4CI	ACNGT	1 cut(s)	17
Bst6I	CTCTTC	1 cut(s)	65
BstC8I	GCNNGC	1 cut(s)	308
BstDEI	CTNAG	2 cut(s)	55, 423
BstF5I	GGATG	1 cut(s)	135
BstFNI	CGCG	1 cut(s)	269
BstHHI	GCGC	2 cut(s)	66, 180
BstKTI	GATC	1 cut(s)	94
BstMAI	GTCTC	1 cut(s)	67
BstMBI	GATC	1 cut(s)	91
BstMCI	CGRYCG	1 cut(s)	395
BstMWI	GCNNNNNNNGC	3 cut(s)	175, 227, 403
BstNI	CCWGG	2 cut(s)	104, 184
BstNSI	RCATGY	1 cut(s)	322
BstSCI	CCNGG	5 cut(s)	102, 182, 282, 450, 456
BstSFI	CTRYAG	1 cut(s)	115
BstUI	CGCG	1 cut(s)	269
BstV1I	GCAGC	1 cut(s)	297
BstV2I	GAAGAC	1 cut(s)	24
BsuRI	GGCC	3 cut(s)	155, 306, 347
BtsCI	GGATG	1 cut(s)	135
Cac8I	GCNNGC	1 cut(s)	308
CfoI	GCGC	2 cut(s)	66, 180
Cfr13I	GGNCC	2 cut(s)	260, 454
Csp6I	GTAC	2 cut(s)	13, 448
CspCI	CAANNNNNGTGG	2 cut(s)	337, 372
CviAII	CATG	1 cut(s)	319
CviQI	GTAC	2 cut(s)	13, 448
DdeI	CTNAG	2 cut(s)	55, 423
DpnI	GATC	1 cut(s)	93
DpnII	GATC	1 cut(s)	91
DriI	GACNNNNNGTC	1 cut(s)	322
EaeI	YGGCCR	1 cut(s)	153
Eam1104I	CTCTTC	1 cut(s)	65
Eam1105I	GACNNNNNGTC	1 cut(s)	322
EarI	CTCTTC	1 cut(s)	65
EciI	GGCGGA	1 cut(s)	316
Eco47I	GGWCC	2 cut(s)	260, 454
EcoO109I	RGGNCCY	1 cut(s)	260
EcoRII	CCWGG	2 cut(s)	102, 182
FaeI	CATG	1 cut(s)	322
FaiI	YATR	3 cut(s)	96, 320, 335
FatI	CATG	1 cut(s)	318
FbaI	TGATCA	1 cut(s)	91
Fnu4HI	GCNGC	3 cut(s)	219, 222, 311
FokI	GGATG	1 cut(s)	142
Fsp4HI	GCNGC	3 cut(s)	219, 222, 311
GlaI	GCGC	2 cut(s)	65, 179
GluI	GCNGC	3 cut(s)	219, 222, 311
HaeIII	GGCC	3 cut(s)	155, 306, 347
HapII	CCGG	4 cut(s)	284, 391, 452, 458
HhaI	GCGC	2 cut(s)	66, 180
Hin1II	CATG	1 cut(s)	322
Hin6I	GCGC	2 cut(s)	64, 178
HinP1I	GCGC	2 cut(s)	64, 178
HpaII	CCGG	4 cut(s)	284, 391, 452, 458
Hpy188I	TCNGA	2 cut(s)	257, 469
Hpy99I	CGWCG	7 cut(s)	28, 31, 46, 49, 52, 403, 406
HpyAV	CCTTC	3 cut(s)	273, 296, 337
HpyCH4III	ACNGT	1 cut(s)	17
HpyCH4V	TGCA	1 cut(s)	313
HpyF10VI	GCNNNNNNNGC	3 cut(s)	175, 227, 403
HpyF3I	CTNAG	2 cut(s)	55, 423
Hsp92II	CATG	1 cut(s)	322
HspAI	GCGC	2 cut(s)	64, 178
Ksp22I	TGATCA	1 cut(s)	91
Kzo9I	GATC	1 cut(s)	91
Lsp1109I	GCAGC	1 cut(s)	297
LweI	GCATC	1 cut(s)	361
MalI	GATC	1 cut(s)	93
MbiI	CCGCTC	1 cut(s)	386
MboI	GATC	1 cut(s)	91
MboII	GAAGA	3 cut(s)	24, 27, 82
MhlI	GDGCHC	1 cut(s)	87
MnlI	CCTC	7 cut(s)	113, 126, 251, 263, 264, 340, 346
MseI	TTAA	1 cut(s)	429
MspA1I	CMGCKG	1 cut(s)	310
MspI	CCGG	4 cut(s)	284, 391, 452, 458
MspR9I	CCNGG	5 cut(s)	104, 184, 284, 452, 458
MvaI	CCWGG	2 cut(s)	104, 184
MvnI	CGCG	1 cut(s)	269
MwoI	GCNNNNNNNGC	3 cut(s)	175, 227, 403
NciI	CCSGG	3 cut(s)	284, 452, 458
NdeII	GATC	1 cut(s)	91
NlaIII	CATG	1 cut(s)	322
NlaIV	GGNNCC	3 cut(s)	199, 361, 456
NmeAIII	GCCGAG	1 cut(s)	181
NspI	RCATGY	1 cut(s)	322
PciI	ACATGT	1 cut(s)	318
PcsI	WCGNNNNNNNCGW	3 cut(s)	47, 240, 407
PflMI	CCANNNNNTGG	1 cut(s)	189
PfoI	TCCNGGA	1 cut(s)	282
PkrI	GCNGC	3 cut(s)	220, 223, 312
PpuMI	RGGWCCY	1 cut(s)	260
PscI	ACATGT	1 cut(s)	318
Psp5II	RGGWCCY	1 cut(s)	260
Psp6I	CCWGG	2 cut(s)	102, 182
PspGI	CCWGG	2 cut(s)	102, 182
PspN4I	GGNNCC	3 cut(s)	199, 361, 456
PspPI	GGNCC	2 cut(s)	260, 454
PspPPI	RGGWCCY	1 cut(s)	260
PvuII	CAGCTG	1 cut(s)	310
RsaI	GTAC	2 cut(s)	14, 449
RsaNI	GTAC	2 cut(s)	13, 448
SaqAI	TTAA	1 cut(s)	429
SatI	GCNGC	3 cut(s)	219, 222, 311
Sau3AI	GATC	1 cut(s)	91
Sau96I	GGNCC	2 cut(s)	260, 454
ScrFI	CCNGG	5 cut(s)	104, 184, 284, 452, 458
SduI	GDGCHC	1 cut(s)	87
SetI	ASST	6 cut(s)	56, 255, 265, 312, 357, 429
SfaNI	GCATC	1 cut(s)	361
SfcI	CTRYAG	1 cut(s)	115
SinI	GGWCC	2 cut(s)	260, 454
SsiI	CCGC	6 cut(s)	219, 222, 240, 267, 327, 384
StyD4I	CCNGG	5 cut(s)	102, 182, 282, 450, 456
TaaI	ACNGT	1 cut(s)	17
TaqI	TCGA	3 cut(s)	41, 369, 410
TatI	WGTACW	1 cut(s)	12
TauI	GCSGC	2 cut(s)	221, 224
Tru1I	TTAA	1 cut(s)	429
Tru9I	TTAA	1 cut(s)	429
TseI	GCWGC	1 cut(s)	310
TspDTI	ATGAA	1 cut(s)	27
Van91I	CCANNNNNTGG	1 cut(s)	189
VpaK11BI	GGWCC	2 cut(s)	260, 454
XceI	RCATGY	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.