Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005523.1

Orthogroup ID

OG0009924

Physical Location & Seq

Genomic Coordinates Reverse (-)

74457 .. 74927

Gene Structure 471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005523.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

atggaaggagagtacagttgttcgtcatcgtcttcttcctcgaccacgagcttagagaagcgcaagaagagacaacatgagcacgatgataaccaggaaaagccctacagaggaataaggatgagaaagtggggcaagtgggtggccgagattagagaacccaacaagcggtccaggatttggcttggttcgtacacaactcctgtcgccgccgccagagcctacgacaccgccgttttctaccttcgaggcccttctgcgagactcaacttcccggagttagttttccaagaaggccagctgcacgacatgtcgtccgcttccatacgcaagaaggccaccgaggttggggccaaagtcgacgctgtccaaactgctctccggtcgccgtcgtcgcagtcgaaaactggctcccagattaagcctgatttgaacgaatacccggacccggaaaactccgatgacaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

156

Amino Acids

17.63

Weight (kDa)

9.18

Isoelectric Point (pI)

55.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009924)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G46768 AT1G46768 AT1G46768 AT4G06746
fragaria_vesca	FvH4_2g34020
malus_domestica	MD08G1096000.v1.1 MD15G1078900.v1.1
prunus_persica	Prupe.1G432000_v2.0.a1
pyrus_communis	pycom08g07820 pycom15g07350
rosa_chinensis	RchiOBHm_Chr6g0308371
rosa_laevigata	RLG00000010647
rosa_multiflora	Rmu_sc0005523.1_g000015
rosa_roxburghii	Rroxscaffold_7G00160190
rosa_rugosa	Rorug06G0366300 Rorug06G0366400
rosa_samantha	Rh6AG475700 Rh6BG486000 Rh6CG491200 Rh6DG477500
rosa_wichuraiana	Rw6G041460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	180
AccI	GTMKAC	1 cut(s)	360
AciI	CCGC	5 cut(s)	169, 210, 213, 231, 318
AcoI	YGGCCR	1 cut(s)	144
AfaI	GTAC	2 cut(s)	14, 194
AfiI	CCNNNNNNNGG	5 cut(s)	110, 168, 180, 348, 448
AflIII	ACRYGT	1 cut(s)	309
AgsI	TTSAA	1 cut(s)	433
AhdI	GACNNNNNGTC	1 cut(s)	313
AjnI	CCWGG	2 cut(s)	93, 173
AluBI	AGCT	2 cut(s)	51, 301
AluI	AGCT	2 cut(s)	51, 301
Alw21I	GWGCWC	1 cut(s)	84
Alw26I	GTCTC	2 cut(s)	64, 256
AoxI	GGCC	5 cut(s)	144, 250, 295, 336, 351
ApeKI	GCWGC	1 cut(s)	301
AspLEI	GCGC	1 cut(s)	63
AspS9I	GGNCC	4 cut(s)	171, 251, 351, 445
AsuC2I	CCSGG	3 cut(s)	275, 443, 449
AvaII	GGWCC	2 cut(s)	171, 445
BauI	CACGAG	1 cut(s)	46
BbsI	GAAGAC	1 cut(s)	24
Bbv12I	GWGCWC	1 cut(s)	84
BbvI	GCAGC	1 cut(s)	288
BceAI	ACGGC	2 cut(s)	218, 373
BciT130I	CCWGG	2 cut(s)	95, 175
BcnI	CCSGG	3 cut(s)	275, 443, 449
BcoDI	GTCTC	2 cut(s)	64, 256
BfmI	CTRYAG	1 cut(s)	106
BisI	GCNGC	3 cut(s)	210, 213, 302
BlsI	GCNGC	3 cut(s)	211, 214, 303
Bme1390I	CCNGG	5 cut(s)	95, 175, 275, 443, 449
Bme18I	GGWCC	2 cut(s)	171, 445
BmeRI	GACNNNNNGTC	1 cut(s)	313
BmgT120I	GGNCC	4 cut(s)	171, 251, 351, 445
BmiI	GGNNCC	3 cut(s)	352, 412, 447
BmrFI	CCNGG	5 cut(s)	95, 175, 275, 443, 449
BpiI	GAAGAC	1 cut(s)	24
BpuMI	CCSGG	3 cut(s)	275, 443, 449
BsaJI	CCNNGG	1 cut(s)	342
BsaWI	WCCGGW	1 cut(s)	381
Bsc4I	CCNNNNNNNGG	5 cut(s)	110, 168, 180, 348, 448
Bse1I	ACTGG	1 cut(s)	412
BseBI	CCWGG	2 cut(s)	95, 175
BseDI	CCNNGG	1 cut(s)	342
BseGI	GGATG	1 cut(s)	126
BseLI	CCNNNNNNNGG	5 cut(s)	110, 168, 180, 348, 448
BseNI	ACTGG	1 cut(s)	412
BseXI	GCAGC	1 cut(s)	288
BsgI	GTGCAG	1 cut(s)	287
Bsh1285I	CGRYCG	1 cut(s)	386
BshFI	GGCC	5 cut(s)	146, 252, 297, 338, 353
BsiEI	CGRYCG	1 cut(s)	386
BsiHKAI	GWGCWC	1 cut(s)	84
BsiSI	CCGG	4 cut(s)	275, 382, 443, 449
BslI	CCNNNNNNNGG	5 cut(s)	110, 168, 180, 348, 448
BsmAI	GTCTC	2 cut(s)	64, 256
BsnI	GGCC	5 cut(s)	146, 252, 297, 338, 353
Bsp1286I	GDGCHC	1 cut(s)	84
BspACI	CCGC	5 cut(s)	169, 210, 213, 231, 318
BspANI	GGCC	5 cut(s)	146, 252, 297, 338, 353
BspLI	GGNNCC	3 cut(s)	352, 412, 447
BsrI	ACTGG	1 cut(s)	412
BssECI	CCNNGG	1 cut(s)	342
BssSI	CACGAG	1 cut(s)	46
Bst2BI	CACGAG	1 cut(s)	46
Bst2UI	CCWGG	2 cut(s)	95, 175
Bst4CI	ACNGT	1 cut(s)	17
Bst6I	CTCTTC	1 cut(s)	62
BstC8I	GCNNGC	1 cut(s)	299
BstDEI	CTNAG	1 cut(s)	52
BstF5I	GGATG	1 cut(s)	126
BstHHI	GCGC	1 cut(s)	63
BstMAI	GTCTC	2 cut(s)	64, 256
BstMCI	CGRYCG	1 cut(s)	386
BstMWI	GCNNNNNNNGC	2 cut(s)	218, 394
BstNI	CCWGG	2 cut(s)	95, 175
BstNSI	RCATGY	1 cut(s)	313
BstSCI	CCNGG	5 cut(s)	93, 173, 273, 441, 447
BstSFI	CTRYAG	1 cut(s)	106
BstV1I	GCAGC	1 cut(s)	288
BstV2I	GAAGAC	1 cut(s)	24
BsuRI	GGCC	5 cut(s)	146, 252, 297, 338, 353
BtsCI	GGATG	1 cut(s)	126
Cac8I	GCNNGC	1 cut(s)	299
CfoI	GCGC	1 cut(s)	63
Cfr13I	GGNCC	4 cut(s)	171, 251, 351, 445
CseI	GACGC	1 cut(s)	371
Csp6I	GTAC	2 cut(s)	13, 193
CspCI	CAANNNNNGTGG	2 cut(s)	328, 363
CviAII	CATG	2 cut(s)	77, 310
CviQI	GTAC	2 cut(s)	13, 193
DdeI	CTNAG	1 cut(s)	52
DriI	GACNNNNNGTC	1 cut(s)	313
EaeI	YGGCCR	1 cut(s)	144
Eam1104I	CTCTTC	1 cut(s)	62
Eam1105I	GACNNNNNGTC	1 cut(s)	313
EarI	CTCTTC	1 cut(s)	62
Eco47I	GGWCC	2 cut(s)	171, 445
EcoO109I	RGGNCCY	1 cut(s)	251
EcoRII	CCWGG	2 cut(s)	93, 173
FaeI	CATG	2 cut(s)	80, 313
FaiI	YATR	3 cut(s)	78, 311, 326
FatI	CATG	2 cut(s)	76, 309
FblI	GTMKAC	1 cut(s)	360
Fnu4HI	GCNGC	3 cut(s)	210, 213, 302
FokI	GGATG	1 cut(s)	133
Fsp4HI	GCNGC	3 cut(s)	210, 213, 302
GlaI	GCGC	1 cut(s)	62
GluI	GCNGC	3 cut(s)	210, 213, 302
HaeIII	GGCC	5 cut(s)	146, 252, 297, 338, 353
HapII	CCGG	4 cut(s)	275, 382, 443, 449
HgaI	GACGC	1 cut(s)	371
HhaI	GCGC	1 cut(s)	63
Hin1II	CATG	2 cut(s)	80, 313
Hin6I	GCGC	1 cut(s)	61
HinP1I	GCGC	1 cut(s)	61
HincII	GTYRAC	1 cut(s)	361
HindII	GTYRAC	1 cut(s)	361
HinfI	GANTC	1 cut(s)	264
HpaII	CCGG	4 cut(s)	275, 382, 443, 449
Hpy166II	GTNNAC	2 cut(s)	195, 361
Hpy188I	TCNGA	1 cut(s)	460
Hpy8I	GTNNAC	2 cut(s)	195, 361
Hpy99I	CGWCG	3 cut(s)	365, 394, 397
HpyAV	CCTTC	4 cut(s)	254, 264, 287, 328
HpyCH4III	ACNGT	1 cut(s)	17
HpyCH4V	TGCA	1 cut(s)	304
HpyF10VI	GCNNNNNNNGC	2 cut(s)	218, 394
HpyF3I	CTNAG	1 cut(s)	52
Hsp92II	CATG	2 cut(s)	80, 313
HspAI	GCGC	1 cut(s)	61
LmnI	GCTCC	1 cut(s)	416
Lsp1109I	GCAGC	1 cut(s)	288
MboII	GAAGA	3 cut(s)	24, 27, 79
MhlI	GDGCHC	1 cut(s)	84
MlyI	GAGTC	1 cut(s)	258
MnlI	CCTC	4 cut(s)	49, 104, 242, 337
MseI	TTAA	1 cut(s)	420
MspA1I	CMGCKG	1 cut(s)	301
MspI	CCGG	4 cut(s)	275, 382, 443, 449
MspR9I	CCNGG	5 cut(s)	95, 175, 275, 443, 449
MvaI	CCWGG	2 cut(s)	95, 175
MwoI	GCNNNNNNNGC	2 cut(s)	218, 394
NciI	CCSGG	3 cut(s)	275, 443, 449
NlaIII	CATG	2 cut(s)	80, 313
NlaIV	GGNNCC	3 cut(s)	352, 412, 447
NmeAIII	GCCGAG	1 cut(s)	172
NspI	RCATGY	1 cut(s)	313
PciI	ACATGT	1 cut(s)	309
PcsI	WCGNNNNNNNCGW	2 cut(s)	231, 398
PflFI	GACNNNGTC	1 cut(s)	365
PflMI	CCANNNNNTGG	1 cut(s)	180
PfoI	TCCNGGA	2 cut(s)	173, 273
PkrI	GCNGC	3 cut(s)	211, 214, 303
PleI	GAGTC	1 cut(s)	258
PpsI	GAGTC	1 cut(s)	258
PscI	ACATGT	1 cut(s)	309
Psp6I	CCWGG	2 cut(s)	93, 173
PspGI	CCWGG	2 cut(s)	93, 173
PspN4I	GGNNCC	3 cut(s)	352, 412, 447
PspPI	GGNCC	4 cut(s)	171, 251, 351, 445
PsyI	GACNNNGTC	1 cut(s)	365
PvuII	CAGCTG	1 cut(s)	301
RsaI	GTAC	2 cut(s)	14, 194
RsaNI	GTAC	2 cut(s)	13, 193
SalI	GTCGAC	1 cut(s)	359
SaqAI	TTAA	1 cut(s)	420
SatI	GCNGC	3 cut(s)	210, 213, 302
Sau96I	GGNCC	4 cut(s)	171, 251, 351, 445
SchI	GAGTC	1 cut(s)	258
ScrFI	CCNGG	5 cut(s)	95, 175, 275, 443, 449
SduI	GDGCHC	1 cut(s)	84
SetI	ASST	4 cut(s)	53, 246, 303, 348
SfcI	CTRYAG	1 cut(s)	106
SinI	GGWCC	2 cut(s)	171, 445
SsiI	CCGC	5 cut(s)	169, 210, 213, 231, 318
StyD4I	CCNGG	5 cut(s)	93, 173, 273, 441, 447
TaaI	ACNGT	1 cut(s)	17
TaqI	TCGA	4 cut(s)	41, 247, 360, 401
TatI	WGTACW	1 cut(s)	12
TauI	GCSGC	2 cut(s)	212, 215
Tru1I	TTAA	1 cut(s)	420
Tru9I	TTAA	1 cut(s)	420
TseI	GCWGC	1 cut(s)	301
Tth111I	GACNNNGTC	1 cut(s)	365
Van91I	CCANNNNNTGG	1 cut(s)	180
VpaK11BI	GGWCC	2 cut(s)	171, 445
XceI	RCATGY	1 cut(s)	313
XmiI	GTMKAC	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.