Rorug06G0366400

ethylene-responsive transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0009924
Physical Location & Seq
Forward (+)
51378505 .. 51380924
2420 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0366400.1

Sequence Viewer

Length: 570 bp
ATGGTCATGTGGGTATTTGGTTATGGTTCTTTGATATGGAAAGCCGGCTTTAACTTCGATGAACGCGTCGTCGGATTCATCAAAGACTATCGCCGTGTCTTCTACCAAGGCAGTACTGACCATAGAGGGACTCCTGAGTTTCCAGGAAGAACAGTCACATTGGAACCTGCAGAGGGGGAAGTCTGTTGGGGAGCTGCCTACAAGATCTCAAAGAAGGAAGATCAAGAGATTGCTTTAGAGCACTTAGAAGTGAGGGAGAAGCAGTATGACAAGAAGGCTTATCTTGATTTCTTTACTGAGCCGACGGCTACGACTCCAGCTCTTTCAGGAGTAATGGTATACATTGCCTCTCCAGATAAAAAGCTTAATGTGAACTATTTGGGTCCTGCATCCATTGAAGATATTGCCAAACAGATTGTTCAGGCGAAAGGTCCCTCAGGACCTAATAGAGAGTATCTTTTTAAACTTGAAGAGGCCCTTCTTCAATTTGAATGCAAAGACAAACATGTATCGGATCTTGCAAACGAAGTGAGGCGGATCATTTCAGAGAGGGAGCTCACTGCTTCATGA

Protein Analysis

189

Amino Acids

21.52

Weight (kDa)

5.52

Isoelectric Point (pI)

34.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ChaC PF04752 3 - 179 1.4e-53 ChaC-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009924)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G46768 AT1G46768 AT1G46768 AT4G06746
fragaria_vesca FvH4_2g34020
malus_domestica MD08G1096000.v1.1 MD15G1078900.v1.1
prunus_persica Prupe.1G432000_v2.0.a1
pyrus_communis pycom08g07820 pycom15g07350
rosa_chinensis RchiOBHm_Chr6g0308371
rosa_laevigata RLG00000010647
rosa_multiflora Rmu_sc0005523.1_g000015
rosa_roxburghii Rroxscaffold_7G00160190
rosa_rugosa Rorug06G0366300 Rorug06G0366400
rosa_samantha Rh6AG475700 Rh6BG486000 Rh6CG491200 Rh6DG477500
rosa_wichuraiana Rw6G041460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 175
AccI GTMKAC 1 cut(s) 339
AccII CGCG 1 cut(s) 66
AciI CCGC 1 cut(s) 535
AclWI GGATC 2 cut(s) 522, 545
AfaI GTAC 1 cut(s) 115
AfiI CCNNNNNNNGG 1 cut(s) 173
AflIII ACRYGT 2 cut(s) 64, 505
AgsI TTSAA 4 cut(s) 398, 470, 485, 491
AjnI CCWGG 1 cut(s) 142
AluBI AGCT 4 cut(s) 194, 320, 364, 556
AluI AGCT 4 cut(s) 194, 320, 364, 556
Alw21I GWGCWC 2 cut(s) 243, 558
AlwI GGATC 2 cut(s) 522, 545
AoxI GGCC 1 cut(s) 474
ApeKI GCWGC 1 cut(s) 194
AspS9I GGNCC 4 cut(s) 383, 431, 440, 475
AvaII GGWCC 3 cut(s) 383, 431, 440
AxyI CCTNAGG 1 cut(s) 436
BanII GRGCYC 1 cut(s) 558
BbsI GAAGAC 1 cut(s) 91
Bbv12I GWGCWC 2 cut(s) 243, 558
BbvI GCAGC 1 cut(s) 181
BceAI ACGGC 2 cut(s) 78, 321
BciT130I CCWGG 1 cut(s) 144
BfmI CTRYAG 1 cut(s) 168
BfuAI ACCTGC 1 cut(s) 175
BglII AGATCT 1 cut(s) 204
BisI GCNGC 1 cut(s) 195
BlsI GCNGC 1 cut(s) 196
BmcAI AGTACT 1 cut(s) 115
Bme1390I CCNGG 1 cut(s) 144
Bme18I GGWCC 3 cut(s) 383, 431, 440
BmgT120I GGNCC 4 cut(s) 383, 431, 440, 475
BmiI GGNNCC 3 cut(s) 165, 384, 433
BmrFI CCNGG 1 cut(s) 144
BmsI GCATC 1 cut(s) 398
BpiI GAAGAC 1 cut(s) 91
BpmI CTGGAG 2 cut(s) 300, 336
BsaJI CCNNGG 1 cut(s) 106
BsaXI ACNNNNNCTCC 4 cut(s) 248, 278, 321, 351
Bsc4I CCNNNNNNNGG 1 cut(s) 173
Bse118I RCCGGY 1 cut(s) 44
Bse21I CCTNAGG 1 cut(s) 436
Bse3DI GCAATG 1 cut(s) 342
BseBI CCWGG 1 cut(s) 144
BseDI CCNNGG 1 cut(s) 106
BseGI GGATG 1 cut(s) 389
BseLI CCNNNNNNNGG 1 cut(s) 173
BseMI GCAATG 1 cut(s) 342
BseMII CTCAG 3 cut(s) 126, 288, 450
BseXI GCAGC 1 cut(s) 181
Bsh1236I CGCG 1 cut(s) 66
BshFI GGCC 1 cut(s) 476
BsiHKAI GWGCWC 2 cut(s) 243, 558
BsiSI CCGG 1 cut(s) 45
BslFI GGGAC 2 cut(s) 142, 417
BslI CCNNNNNNNGG 1 cut(s) 173
BsmFI GGGAC 2 cut(s) 142, 417
BsmI GAATGC 1 cut(s) 497
BsnI GGCC 1 cut(s) 476
Bsp1286I GDGCHC 2 cut(s) 243, 558
Bsp143I GATC 4 cut(s) 204, 220, 514, 537
BspACI CCGC 1 cut(s) 535
BspANI GGCC 1 cut(s) 476
BspCNI CTCAG 3 cut(s) 127, 289, 449
BspFNI CGCG 1 cut(s) 66
BspHI TCATGA 1 cut(s) 566
BspLI GGNNCC 3 cut(s) 165, 384, 433
BspMAI CTGCAG 1 cut(s) 172
BspMI ACCTGC 1 cut(s) 175
BspPI GGATC 2 cut(s) 522, 545
BsrDI GCAATG 1 cut(s) 342
BsrFI RCCGGY 1 cut(s) 44
BssAI RCCGGY 1 cut(s) 44
BssECI CCNNGG 1 cut(s) 106
BssMI GATC 4 cut(s) 204, 220, 514, 537
BssNAI GTATAC 1 cut(s) 340
BssT1I CCWWGG 1 cut(s) 106
Bst1107I GTATAC 1 cut(s) 340
Bst2UI CCWGG 1 cut(s) 144
Bst4CI ACNGT 1 cut(s) 154
Bst6I CTCTTC 1 cut(s) 465
BstC8I GCNNGC 1 cut(s) 46
BstDEI CTNAG 4 cut(s) 135, 244, 297, 436
BstF5I GGATG 1 cut(s) 389
BstFNI CGCG 1 cut(s) 66
BstKTI GATC 4 cut(s) 207, 223, 517, 540
BstMBI GATC 4 cut(s) 204, 220, 514, 537
BstNI CCWGG 1 cut(s) 144
BstNSI RCATGY 1 cut(s) 509
BstSCI CCNGG 1 cut(s) 142
BstSFI CTRYAG 1 cut(s) 168
BstUI CGCG 1 cut(s) 66
BstV1I GCAGC 1 cut(s) 181
BstV2I GAAGAC 1 cut(s) 91
BstX2I RGATCY 2 cut(s) 204, 514
BstYI RGATCY 2 cut(s) 204, 514
BstZ17I GTATAC 1 cut(s) 340
Bsu36I CCTNAGG 1 cut(s) 436
BsuRI GGCC 1 cut(s) 476
BtsCI GGATG 1 cut(s) 389
BtsI GCAGTG 1 cut(s) 558
BtsIMutI CAGTG 1 cut(s) 558
BveI ACCTGC 1 cut(s) 175
Cac8I GCNNGC 1 cut(s) 46
CciI TCATGA 1 cut(s) 566
Cfr10I RCCGGY 1 cut(s) 44
Cfr13I GGNCC 4 cut(s) 383, 431, 440, 475
CseI GACGC 1 cut(s) 55
Csp6I GTAC 1 cut(s) 114
CviAII CATG 3 cut(s) 7, 506, 567
CviQI GTAC 1 cut(s) 114
DdeI CTNAG 4 cut(s) 135, 244, 297, 436
DpnI GATC 4 cut(s) 206, 222, 516, 539
DpnII GATC 4 cut(s) 204, 220, 514, 537
DraI TTTAAA 1 cut(s) 463
Eam1104I CTCTTC 1 cut(s) 465
EarI CTCTTC 1 cut(s) 465
EciI GGCGGA 1 cut(s) 550
Ecl136II GAGCTC 1 cut(s) 556
Eco130I CCWWGG 1 cut(s) 106
Eco24I GRGCYC 1 cut(s) 558
Eco47I GGWCC 3 cut(s) 383, 431, 440
Eco53kI GAGCTC 1 cut(s) 556
Eco81I CCTNAGG 1 cut(s) 436
EcoICRI GAGCTC 1 cut(s) 556
EcoO109I RGGNCCY 4 cut(s) 383, 431, 440, 475
EcoRII CCWGG 1 cut(s) 142
EcoT14I CCWWGG 1 cut(s) 106
EcoT38I GRGCYC 1 cut(s) 558
ErhI CCWWGG 1 cut(s) 106
FaeI CATG 3 cut(s) 10, 509, 570
FaiI YATR 8 cut(s) 8, 24, 37, 123, 267, 340, 507, 568
FalI AAGNNNNNCTT 2 cut(s) 462, 494
FaqI GGGAC 2 cut(s) 142, 417
FatI CATG 3 cut(s) 6, 505, 566
FblI GTMKAC 1 cut(s) 339
Fnu4HI GCNGC 1 cut(s) 195
FokI GGATG 1 cut(s) 376
FriOI GRGCYC 1 cut(s) 558
Fsp4HI GCNGC 1 cut(s) 195
GluI GCNGC 1 cut(s) 195
GsuI CTGGAG 2 cut(s) 300, 336
HaeIII GGCC 1 cut(s) 476
HapII CCGG 1 cut(s) 45
HgaI GACGC 1 cut(s) 55
Hin1II CATG 3 cut(s) 10, 509, 570
HindIII AAGCTT 1 cut(s) 362
HinfI GANTC 3 cut(s) 75, 130, 313
HpaII CCGG 1 cut(s) 45
Hpy166II GTNNAC 2 cut(s) 340, 373
Hpy188I TCNGA 3 cut(s) 74, 514, 547
Hpy188III TCNNGA 7 cut(s) 134, 224, 284, 327, 353, 438, 567
Hpy8I GTNNAC 2 cut(s) 340, 373
Hpy99I CGWCG 3 cut(s) 71, 74, 307
HpyAV CCTTC 3 cut(s) 208, 268, 488
HpyCH4III ACNGT 1 cut(s) 154
HpyCH4V TGCA 4 cut(s) 170, 389, 495, 521
HpyF3I CTNAG 4 cut(s) 135, 244, 297, 436
Hsp92II CATG 3 cut(s) 10, 509, 570
KroI GCCGGC 1 cut(s) 44
KroNI GCCGGC 1 cut(s) 46
Kzo9I GATC 4 cut(s) 204, 220, 514, 537
LmnI GCTCC 2 cut(s) 191, 553
Lsp1109I GCAGC 1 cut(s) 181
LweI GCATC 1 cut(s) 398
MaeIII GTNAC 1 cut(s) 154
MalI GATC 4 cut(s) 206, 222, 516, 539
MboI GATC 4 cut(s) 204, 220, 514, 537
MboII GAAGA 6 cut(s) 91, 159, 230, 410, 473, 482
MflI RGATCY 2 cut(s) 204, 514
MhlI GDGCHC 2 cut(s) 243, 558
MluCI AATT 1 cut(s) 485
MluI ACGCGT 1 cut(s) 64
MlyI GAGTC 2 cut(s) 124, 307
MmeI TCCRAC 1 cut(s) 52
MnlI CCTC 8 cut(s) 119, 166, 246, 358, 445, 466, 525, 543
MroNI GCCGGC 1 cut(s) 44
MseI TTAA 3 cut(s) 51, 366, 462
MspI CCGG 1 cut(s) 45
MspR9I CCNGG 1 cut(s) 144
Mva1269I GAATGC 1 cut(s) 497
MvaI CCWGG 1 cut(s) 144
MvnI CGCG 1 cut(s) 66
NaeI GCCGGC 1 cut(s) 46
NdeII GATC 4 cut(s) 204, 220, 514, 537
NgoMIV GCCGGC 1 cut(s) 44
NlaIII CATG 3 cut(s) 10, 509, 570
NlaIV GGNNCC 3 cut(s) 165, 384, 433
NmuCI GTSAC 1 cut(s) 154
NspI RCATGY 1 cut(s) 509
PagI TCATGA 1 cut(s) 566
PciI ACATGT 1 cut(s) 505
PcsI WCGNNNNNNNCGW 1 cut(s) 63
PctI GAATGC 1 cut(s) 497
PdiI GCCGGC 1 cut(s) 46
PfeI GAWTC 1 cut(s) 75
PfoI TCCNGGA 1 cut(s) 142
PkrI GCNGC 1 cut(s) 196
PleI GAGTC 2 cut(s) 124, 307
PpsI GAGTC 2 cut(s) 124, 307
PpuMI RGGWCCY 3 cut(s) 383, 431, 440
PscI ACATGT 1 cut(s) 505
Psp124BI GAGCTC 1 cut(s) 558
Psp5II RGGWCCY 3 cut(s) 383, 431, 440
Psp6I CCWGG 1 cut(s) 142
PspGI CCWGG 1 cut(s) 142
PspN4I GGNNCC 3 cut(s) 165, 384, 433
PspPI GGNCC 4 cut(s) 383, 431, 440, 475
PspPPI RGGWCCY 3 cut(s) 383, 431, 440
PstI CTGCAG 1 cut(s) 172
PsuI RGATCY 2 cut(s) 204, 514
RsaI GTAC 1 cut(s) 115
RsaNI GTAC 1 cut(s) 114
SacI GAGCTC 1 cut(s) 558
SaqAI TTAA 3 cut(s) 51, 366, 462
SatI GCNGC 1 cut(s) 195
Sau3AI GATC 4 cut(s) 204, 220, 514, 537
Sau96I GGNCC 4 cut(s) 383, 431, 440, 475
ScaI AGTACT 1 cut(s) 115
SchI GAGTC 2 cut(s) 124, 307
ScrFI CCNGG 1 cut(s) 144
SduI GDGCHC 2 cut(s) 243, 558
SetI ASST 7 cut(s) 169, 196, 322, 366, 433, 445, 558
SfaNI GCATC 1 cut(s) 398
SfcI CTRYAG 1 cut(s) 168
SinI GGWCC 3 cut(s) 383, 431, 440
Sse9I AATT 1 cut(s) 485
SsiI CCGC 1 cut(s) 535
SstI GAGCTC 1 cut(s) 558
StyD4I CCNGG 1 cut(s) 142
StyI CCWWGG 1 cut(s) 106
TaaI ACNGT 1 cut(s) 154
TaqI TCGA 1 cut(s) 57
TasI AATT 1 cut(s) 485
TatI WGTACW 1 cut(s) 113
TfiI GAWTC 1 cut(s) 75
Tru1I TTAA 3 cut(s) 51, 366, 462
Tru9I TTAA 3 cut(s) 51, 366, 462
TscAI CASTG 1 cut(s) 565
TseFI GTSAC 1 cut(s) 154
TseI GCWGC 1 cut(s) 194
Tsp45I GTSAC 1 cut(s) 154
TspDTI ATGAA 3 cut(s) 67, 75, 555
TspRI CASTG 1 cut(s) 565
VpaK11BI GGWCC 3 cut(s) 383, 431, 440
XceI RCATGY 1 cut(s) 509
XmiI GTMKAC 1 cut(s) 339
ZrmI AGTACT 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.