Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0009924

Physical Location & Seq

Genomic Coordinates Forward (+)

51368509 .. 51370723

Gene Structure 2215 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0366300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGGCAAACAAAGGTTCATATGAAAGACTGAGTCCGTTTCTTAACAAGATAAAGCCTTACTTGGCTATGGTGTCCCTGCAATTTGGATATGCTGGGATGTATATTATAAGCATGGTTGGTTTAAAGCGCGGTATGAACCACTTCGTCCTGGCTACCTATAGGCATTTCATTGCCTTTGCTGTGATCGCACCCTTCGCACTTGTCCTCGAAAGGAAAATAAGGCCAAAACTGACTCTCCCCATCTTCCTAAGAATAATGGTGCTTGGTTTTCTCGAGCCTGTGCTAGCTCAAAACTTATACTTCGTGGGAATGACATACACCTCAGCAACATTTGCTTCTGCCACTGCTAATATCCTCCCTGCCATTACCTTCATTTTCGCACTTATTTTCAGGTTGGAGAAAATCAATTTGAAGAAGATCCCTAGCGTAGCAAAGGTGATCGGAACTGTAATCACCGTCAGTGGAGCAATGCTCATGACGTTTTACAAAGGCCCGATCGTTGAATTTATAAGTGCACAAGCTAGCCACCATGCAACCACTGCTGCCGCCACCGACAAGCATTGGGTTCTCGGCACTGTCATGCTCCTAGCTCGTTGCTGTGGTTGGTCCGGTTTCTTCATTCTCCAATCGTTTACTTTGAAGGTGTACCCAGCAGAGCTCTCTCTCACTGCTTTGATCTGCTTCATGGGTGCTTTGGAAGGTGCCGTAGCTACACTAGTTATCGAACACAACATGAGTGTTTGGGTTATAGGCTGGGACTCTAGGCTCCTTGCTGCAGCTTACTCTGGGATAGTTTGCTCTGGAATTGCATTTTATGTTCAAGGGATTGTGATGAAGGAACAAGGCCCTGTGTTCGTCACAGCTTTCAGCCCACTGGCCATGATCATCACCGCCGCTCTAGCCGCCATTATTTTAGCTGAGCAAGTCCGCCTTGGAAGTGTAATTGGGACCATTCTCATAGTCATTGGCCTCTATGCTGTTGTGTGGGGTAAAAGTAAAGAACGTTCAGCCTCAATGAAAGATGTGAAAACTATTGATCATGAATTGCCAATCACTCATGATACTGCAAGATCATCAACAACTGTTGATAGCAAGAATGATACTACTGGACTCGAGGAGAATGTTGTCAAAGTTCCAATTAACCCACAAGAATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

385

Amino Acids

41.97

Weight (kDa)

9.38

Isoelectric Point (pI)

32.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	20 - 160	9.1e-14	EamA-like transporter family
EamA	PF00892	191 - 328	1.3e-08	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009924)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G46768 AT1G46768 AT1G46768 AT4G06746
fragaria_vesca	FvH4_2g34020
malus_domestica	MD08G1096000.v1.1 MD15G1078900.v1.1
prunus_persica	Prupe.1G432000_v2.0.a1
pyrus_communis	pycom08g07820 pycom15g07350
rosa_chinensis	RchiOBHm_Chr6g0308371
rosa_laevigata	RLG00000010647
rosa_multiflora	Rmu_sc0005523.1_g000015
rosa_roxburghii	Rroxscaffold_7G00160190
rosa_rugosa	Rorug06G0366300 Rorug06G0366400
rosa_samantha	Rh6AG475700 Rh6BG486000 Rh6CG491200 Rh6DG477500
rosa_wichuraiana	Rw6G041460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	107, 509
AccB1I	GGYRCC	1 cut(s)	701
AccBSI	CCGCTC	1 cut(s)	896
AccII	CGCG	1 cut(s)	129
AciI	CCGC	6 cut(s)	129, 546, 891, 894, 903, 928
AclI	AACGTT	1 cut(s)	1003
AclWI	GGATC	1 cut(s)	412
AcoI	YGGCCR	1 cut(s)	876
AcsI	RAATTY	1 cut(s)	503
AfaI	GTAC	1 cut(s)	647
AgsI	TTSAA	4 cut(s)	412, 503, 640, 821
AhlI	ACTAGT	1 cut(s)	715
AjnI	CCWGG	1 cut(s)	147
AluBI	AGCT	8 cut(s)	287, 521, 590, 658, 710, 779, 863, 917
AluI	AGCT	8 cut(s)	287, 521, 590, 658, 710, 779, 863, 917
Alw21I	GWGCWC	2 cut(s)	517, 660
Alw44I	GTGCAC	1 cut(s)	513
AlwI	GGATC	1 cut(s)	412
Ama87I	CYCGRG	2 cut(s)	272, 1112
AoxI	GGCC	5 cut(s)	221, 490, 844, 876, 967
ApaLI	GTGCAC	1 cut(s)	513
ApeKI	GCWGC	3 cut(s)	542, 773, 776
ApoI	RAATTY	1 cut(s)	503
Asp700I	GAANNNNTTC	1 cut(s)	140
AspLEI	GCGC	1 cut(s)	129
AspS9I	GGNCC	4 cut(s)	491, 606, 845, 948
AsuHPI	GGTGA	3 cut(s)	445, 448, 880
AsuNHI	GCTAGC	2 cut(s)	283, 521
AvaI	CYCGRG	2 cut(s)	272, 1112
AvaII	GGWCC	2 cut(s)	606, 948
BaeGI	GKGCMC	1 cut(s)	517
BalI	TGGCCA	1 cut(s)	878
BanI	GGYRCC	1 cut(s)	701
BanII	GRGCYC	1 cut(s)	660
Bbv12I	GWGCWC	2 cut(s)	517, 660
BbvCI	CCTCAGC	1 cut(s)	322
BbvI	GCAGC	3 cut(s)	529, 760, 788
BccI	CCATC	1 cut(s)	248
BceAI	ACGGC	1 cut(s)	689
BciT130I	CCWGG	1 cut(s)	149
BclI	TGATCA	2 cut(s)	882, 1036
BcuI	ACTAGT	1 cut(s)	715
BfaI	CTAG	7 cut(s)	284, 423, 522, 587, 716, 762, 899
BfmI	CTRYAG	2 cut(s)	157, 774
BisI	GCNGC	6 cut(s)	543, 546, 774, 777, 894, 903
BlpI	GCTNAGC	1 cut(s)	918
BlsI	GCNGC	6 cut(s)	544, 547, 775, 778, 895, 904
Bme1390I	CCNGG	1 cut(s)	149
Bme18I	GGWCC	2 cut(s)	606, 948
BmeT110I	CYCGRG	2 cut(s)	272, 1112
BmgT120I	GGNCC	4 cut(s)	491, 606, 845, 948
BmiI	GGNNCC	3 cut(s)	703, 767, 949
BmrFI	CCNGG	1 cut(s)	149
BmtI	GCTAGC	2 cut(s)	287, 525
BplI	GAGNNNNNCTC	2 cut(s)	456, 488
Bpu10I	CCTNAGC	1 cut(s)	322
Bpu1102I	GCTNAGC	1 cut(s)	918
BsaJI	CCNNGG	1 cut(s)	931
BsaWI	WCCGGW	1 cut(s)	608
BsaXI	ACNNNNNCTCC	2 cut(s)	219, 249
Bse1I	ACTGG	2 cut(s)	879, 1111
Bse3DI	GCAATG	2 cut(s)	168, 474
BseBI	CCWGG	1 cut(s)	149
BseDI	CCNNGG	1 cut(s)	931
BseGI	GGATG	1 cut(s)	102
BseMI	GCAATG	2 cut(s)	168, 474
BseMII	CTCAG	3 cut(s)	20, 336, 909
BseNI	ACTGG	2 cut(s)	879, 1111
BseRI	GAGGAG	1 cut(s)	1130
BseSI	GKGCMC	1 cut(s)	517
BseXI	GCAGC	3 cut(s)	529, 760, 788
BseYI	CCCAGC	3 cut(s)	92, 649, 753
Bsh1236I	CGCG	1 cut(s)	129
Bsh1285I	CGRYCG	1 cut(s)	498
BshFI	GGCC	5 cut(s)	223, 492, 846, 878, 969
BshNI	GGYRCC	1 cut(s)	701
BsiEI	CGRYCG	1 cut(s)	498
BsiHKAI	GWGCWC	2 cut(s)	517, 660
BsiHKCI	CYCGRG	2 cut(s)	272, 1112
BsiSI	CCGG	1 cut(s)	609
BslFI	GGGAC	3 cut(s)	58, 770, 961
BsmFI	GGGAC	3 cut(s)	58, 770, 961
BsnI	GGCC	5 cut(s)	223, 492, 846, 878, 969
BsoBI	CYCGRG	2 cut(s)	272, 1112
Bsp1286I	GDGCHC	2 cut(s)	517, 660
Bsp143I	GATC	8 cut(s)	183, 417, 438, 495, 675, 882, 1036, 1070
Bsp1720I	GCTNAGC	1 cut(s)	918
BspACI	CCGC	6 cut(s)	129, 546, 891, 894, 903, 928
BspANI	GGCC	5 cut(s)	223, 492, 846, 878, 969
BspCNI	CTCAG	3 cut(s)	21, 335, 910
BspFNI	CGCG	1 cut(s)	129
BspHI	TCATGA	4 cut(s)	474, 1039, 1057, 1154
BspLI	GGNNCC	3 cut(s)	703, 767, 949
BspMAI	CTGCAG	1 cut(s)	778
BspOI	GCTAGC	2 cut(s)	287, 525
BspPI	GGATC	1 cut(s)	412
BspT107I	GGYRCC	1 cut(s)	701
BsrBI	CCGCTC	1 cut(s)	896
BsrDI	GCAATG	2 cut(s)	168, 474
BsrI	ACTGG	2 cut(s)	879, 1111
BssECI	CCNNGG	1 cut(s)	931
BssMI	GATC	8 cut(s)	183, 417, 438, 495, 675, 882, 1036, 1070
BssT1I	CCWWGG	1 cut(s)	931
Bst2UI	CCWGG	1 cut(s)	149
Bst4CI	ACNGT	4 cut(s)	448, 457, 577, 1084
BstAPI	GCANNNNNTGC	2 cut(s)	332, 539
BstC8I	GCNNGC	2 cut(s)	285, 523
BstDEI	CTNAG	4 cut(s)	29, 248, 322, 918
BstF5I	GGATG	1 cut(s)	102
BstFNI	CGCG	1 cut(s)	129
BstHHI	GCGC	1 cut(s)	129
BstKTI	GATC	8 cut(s)	186, 420, 441, 498, 678, 885, 1039, 1073
BstMBI	GATC	8 cut(s)	183, 417, 438, 495, 675, 882, 1036, 1070
BstMCI	CGRYCG	1 cut(s)	498
BstMWI	GCNNNNNNNGC	6 cut(s)	185, 194, 332, 539, 899, 902
BstNI	CCWGG	1 cut(s)	149
BstSCI	CCNGG	1 cut(s)	147
BstSFI	CTRYAG	2 cut(s)	157, 774
BstSLI	GKGCMC	1 cut(s)	517
BstUI	CGCG	1 cut(s)	129
BstV1I	GCAGC	3 cut(s)	529, 760, 788
BstX2I	RGATCY	1 cut(s)	417
BstYI	RGATCY	1 cut(s)	417
BsuRI	GGCC	5 cut(s)	223, 492, 846, 878, 969
BtsCI	GGATG	1 cut(s)	102
BtsI	GCAGTG	3 cut(s)	342, 537, 666
BtsIMutI	CAGTG	6 cut(s)	342, 466, 537, 573, 666, 872
Cac8I	GCNNGC	2 cut(s)	285, 523
CciI	TCATGA	4 cut(s)	474, 1039, 1057, 1154
CfoI	GCGC	1 cut(s)	129
Cfr13I	GGNCC	4 cut(s)	491, 606, 845, 948
Csp6I	GTAC	1 cut(s)	646
CviQI	GTAC	1 cut(s)	646
DdeI	CTNAG	4 cut(s)	29, 248, 322, 918
DpnI	GATC	8 cut(s)	185, 419, 440, 497, 677, 884, 1038, 1072
DpnII	GATC	8 cut(s)	183, 417, 438, 495, 675, 882, 1036, 1070
DraI	TTTAAA	1 cut(s)	123
EaeI	YGGCCR	1 cut(s)	876
EciI	GGCGGA	1 cut(s)	917
Ecl136II	GAGCTC	1 cut(s)	658
Eco130I	CCWWGG	1 cut(s)	931
Eco24I	GRGCYC	1 cut(s)	660
Eco47I	GGWCC	2 cut(s)	606, 948
Eco53kI	GAGCTC	1 cut(s)	658
Eco88I	CYCGRG	2 cut(s)	272, 1112
EcoICRI	GAGCTC	1 cut(s)	658
EcoO109I	RGGNCCY	1 cut(s)	845
EcoRII	CCWGG	1 cut(s)	147
EcoT14I	CCWWGG	1 cut(s)	931
EcoT38I	GRGCYC	1 cut(s)	660
ErhI	CCWWGG	1 cut(s)	931
FalI	AAGNNNNNCTT	4 cut(s)	44, 76, 915, 947
FaqI	GGGAC	3 cut(s)	58, 770, 961
FauNDI	CATATG	1 cut(s)	19
FbaI	TGATCA	2 cut(s)	882, 1036
Fnu4HI	GCNGC	6 cut(s)	543, 546, 774, 777, 894, 903
FokI	GGATG	1 cut(s)	109
FriOI	GRGCYC	1 cut(s)	660
Fsp4HI	GCNGC	6 cut(s)	543, 546, 774, 777, 894, 903
FspBI	CTAG	7 cut(s)	284, 423, 522, 587, 716, 762, 899
GlaI	GCGC	1 cut(s)	128
GluI	GCNGC	6 cut(s)	543, 546, 774, 777, 894, 903
GsaI	CCCAGC	3 cut(s)	96, 653, 757
HaeIII	GGCC	5 cut(s)	223, 492, 846, 878, 969
HapII	CCGG	1 cut(s)	609
HhaI	GCGC	1 cut(s)	129
Hin6I	GCGC	1 cut(s)	127
HinP1I	GCGC	1 cut(s)	127
HinfI	GANTC	5 cut(s)	31, 232, 758, 1110, 1151
HpaII	CCGG	1 cut(s)	609
HphI	GGTGA	3 cut(s)	445, 448, 880
Hpy166II	GTNNAC	3 cut(s)	515, 633, 646
Hpy188I	TCNGA	1 cut(s)	443
Hpy188III	TCNNGA	6 cut(s)	272, 475, 801, 1040, 1058, 1155
Hpy8I	GTNNAC	3 cut(s)	515, 633, 646
HpyAV	CCTTC	5 cut(s)	202, 379, 634, 692, 829
HpyCH4III	ACNGT	4 cut(s)	448, 457, 577, 1084
HpyCH4IV	ACGT	2 cut(s)	479, 1003
HpyCH4V	TGCA	6 cut(s)	79, 515, 533, 776, 809, 1067
HpyF10VI	GCNNNNNNNGC	6 cut(s)	185, 194, 332, 539, 899, 902
HpyF3I	CTNAG	4 cut(s)	29, 248, 322, 918
HpySE526I	ACGT	2 cut(s)	479, 1003
HspAI	GCGC	1 cut(s)	127
Ksp22I	TGATCA	2 cut(s)	882, 1036
Kzo9I	GATC	8 cut(s)	183, 417, 438, 495, 675, 882, 1036, 1070
LmnI	GCTCC	3 cut(s)	464, 588, 771
Lsp1109I	GCAGC	3 cut(s)	529, 760, 788
MaeI	CTAG	7 cut(s)	284, 423, 522, 587, 716, 762, 899
MaeII	ACGT	2 cut(s)	479, 1003
MaeIII	GTNAC	1 cut(s)	856
MalI	GATC	8 cut(s)	185, 419, 440, 497, 677, 884, 1038, 1072
MbiI	CCGCTC	1 cut(s)	896
MboI	GATC	8 cut(s)	183, 417, 438, 495, 675, 882, 1036, 1070
MboII	GAAGA	4 cut(s)	235, 424, 427, 607
MflI	RGATCY	1 cut(s)	417
MhlI	GDGCHC	2 cut(s)	517, 660
MlsI	TGGCCA	1 cut(s)	878
MluCI	AATT	7 cut(s)	80, 406, 503, 804, 942, 1043, 1137
MluNI	TGGCCA	1 cut(s)	878
MlyI	GAGTC	4 cut(s)	40, 226, 752, 1104
MmeI	TCCRAC	1 cut(s)	375
MnlI	CCTC	6 cut(s)	215, 331, 365, 980, 1021, 1108
Mox20I	TGGCCA	1 cut(s)	878
MroXI	GAANNNNTTC	1 cut(s)	140
MscI	TGGCCA	1 cut(s)	878
MseI	TTAA	3 cut(s)	42, 122, 1140
MslI	CAYNNNNRTG	1 cut(s)	578
Msp20I	TGGCCA	1 cut(s)	878
MspI	CCGG	1 cut(s)	609
MspR9I	CCNGG	1 cut(s)	149
MvaI	CCWGG	1 cut(s)	149
MvnI	CGCG	1 cut(s)	129
MwoI	GCNNNNNNNGC	6 cut(s)	185, 194, 332, 539, 899, 902
NdeI	CATATG	1 cut(s)	19
NdeII	GATC	8 cut(s)	183, 417, 438, 495, 675, 882, 1036, 1070
NheI	GCTAGC	2 cut(s)	283, 521
NlaIV	GGNNCC	3 cut(s)	703, 767, 949
NmeAIII	GCCGAG	1 cut(s)	549
NmuCI	GTSAC	1 cut(s)	856
PaeR7I	CTCGAG	2 cut(s)	272, 1112
PagI	TCATGA	4 cut(s)	474, 1039, 1057, 1154
PdmI	GAANNNNTTC	1 cut(s)	140
PfeI	GAWTC	1 cut(s)	1151
PflFI	GACNNNGTC	1 cut(s)	30
PkrI	GCNGC	6 cut(s)	544, 547, 775, 778, 895, 904
Ple19I	CGATCG	1 cut(s)	498
PleI	GAGTC	4 cut(s)	39, 226, 752, 1104
PpsI	GAGTC	4 cut(s)	39, 226, 752, 1104
PsiI	TTATAA	2 cut(s)	107, 509
Psp124BI	GAGCTC	1 cut(s)	660
Psp1406I	AACGTT	1 cut(s)	1003
Psp6I	CCWGG	1 cut(s)	147
PspFI	CCCAGC	3 cut(s)	92, 649, 753
PspGI	CCWGG	1 cut(s)	147
PspN4I	GGNNCC	3 cut(s)	703, 767, 949
PspPI	GGNCC	4 cut(s)	491, 606, 845, 948
PspXI	VCTCGAGB	1 cut(s)	1112
PsrI	GAACNNNNNNTAC	2 cut(s)	988, 1020
PstI	CTGCAG	1 cut(s)	778
PsuI	RGATCY	1 cut(s)	417
PsyI	GACNNNGTC	1 cut(s)	30
PvuI	CGATCG	1 cut(s)	498
RsaI	GTAC	1 cut(s)	647
RsaNI	GTAC	1 cut(s)	646
RseI	CAYNNNNRTG	1 cut(s)	578
SacI	GAGCTC	1 cut(s)	660
SaqAI	TTAA	3 cut(s)	42, 122, 1140
SatI	GCNGC	6 cut(s)	543, 546, 774, 777, 894, 903
Sau3AI	GATC	8 cut(s)	183, 417, 438, 495, 675, 882, 1036, 1070
Sau96I	GGNCC	4 cut(s)	491, 606, 845, 948
SchI	GAGTC	4 cut(s)	40, 226, 752, 1104
ScrFI	CCNGG	1 cut(s)	149
SduI	GDGCHC	2 cut(s)	517, 660
SfcI	CTRYAG	2 cut(s)	157, 774
Sfr274I	CTCGAG	2 cut(s)	272, 1112
SinI	GGWCC	2 cut(s)	606, 948
SlaI	CTCGAG	2 cut(s)	272, 1112
SmiMI	CAYNNNNRTG	1 cut(s)	578
SmlI	CTYRAG	2 cut(s)	272, 1112
SmoI	CTYRAG	2 cut(s)	272, 1112
SpeI	ACTAGT	1 cut(s)	715
Sse9I	AATT	7 cut(s)	80, 406, 503, 804, 942, 1043, 1137
SsiI	CCGC	6 cut(s)	129, 546, 891, 894, 903, 928
SspMI	CTAG	7 cut(s)	284, 423, 522, 587, 716, 762, 899
SstI	GAGCTC	1 cut(s)	660
StyD4I	CCNGG	1 cut(s)	147
StyI	CCWWGG	1 cut(s)	931
TaaI	ACNGT	4 cut(s)	448, 457, 577, 1084
TaiI	ACGT	2 cut(s)	482, 1006
TaqI	TCGA	4 cut(s)	207, 273, 723, 1113
TasI	AATT	7 cut(s)	80, 406, 503, 804, 942, 1043, 1137
TauI	GCSGC	3 cut(s)	548, 896, 905
TfiI	GAWTC	1 cut(s)	1151
Tru1I	TTAA	3 cut(s)	42, 122, 1140
Tru9I	TTAA	3 cut(s)	42, 122, 1140
TscAI	CASTG	6 cut(s)	349, 466, 544, 580, 673, 879
TseFI	GTSAC	1 cut(s)	856
TseI	GCWGC	3 cut(s)	542, 773, 776
Tsp45I	GTSAC	1 cut(s)	856
TspGWI	ACGGA	1 cut(s)	24
TspRI	CASTG	6 cut(s)	349, 466, 544, 580, 673, 879
Tth111I	GACNNNGTC	1 cut(s)	30
VneI	GTGCAC	1 cut(s)	513
VpaK11BI	GGWCC	2 cut(s)	606, 948
XapI	RAATTY	1 cut(s)	503
XhoI	CTCGAG	2 cut(s)	272, 1112
XmnI	GAANNNNTTC	1 cut(s)	140
XspI	CTAG	7 cut(s)	284, 423, 522, 587, 716, 762, 899

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.