Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009924

Physical Location & Seq

Genomic Coordinates Forward (+)

36992321 .. 36992855

Gene Structure 535 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G432000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGAAGGAGAGTATTGTTGTTCTTCATCTTCTTCGTCTTCAACAACCACAACAACAAGCATAGAGAAGCGCAAGCAGAGGCAAAACCAGCAGCAACAGCAACAAGTAGGAGGCAACCATGATCATCGTCATCAAGAAAAGCAATACAGAGGGATACGGATGAGGAAGTGGGGGAAGTGGGTGGCTGAGATTAGAGAACCCAACAAGAGGTCTCGAATCTGGCTTGGTTCTTACACGACGCCGGTTGCCGCCGCCCGAGCATACGACACCGCCGTTTTCTACCTCAGAGGCCCTTCTGCGCGCCTCAACTTCCCGGAACTTGTGTTCCAAGAAGACGGCCAGCAGCTACACGACATGTCGGCGGCTTCGATACGAAAGAAGGCTACGGAGGTTGGGGCCAAGGTCGACGCCGTCGAAACTGCTCACCGCTCACCAATATCGCAGTCGAAAACGACGTCGAGCCTGGTGAATTCCCAGAAGCCTGATTTAAATAAGTATCCCGACCCAGAAAACTCTGATGAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

176

Amino Acids

19.84

Weight (kDa)

9.39

Isoelectric Point (pI)

58.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009924)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G46768 AT1G46768 AT1G46768 AT4G06746
fragaria_vesca	FvH4_2g34020
malus_domestica	MD08G1096000.v1.1 MD15G1078900.v1.1
prunus_persica	Prupe.1G432000_v2.0.a1
pyrus_communis	pycom08g07820 pycom15g07350
rosa_chinensis	RchiOBHm_Chr6g0308371
rosa_laevigata	RLG00000010647
rosa_multiflora	Rmu_sc0005523.1_g000015
rosa_roxburghii	Rroxscaffold_7G00160190
rosa_rugosa	Rorug06G0366300 Rorug06G0366400
rosa_samantha	Rh6AG475700 Rh6BG486000 Rh6CG491200 Rh6DG477500
rosa_wichuraiana	Rw6G041460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	458
AccBSI	CCGCTC	1 cut(s)	429
AccI	GTMKAC	1 cut(s)	405
AccII	CGCG	1 cut(s)	301
AciI	CCGC	5 cut(s)	249, 252, 270, 362, 427
AcoI	YGGCCR	1 cut(s)	337
AcsI	RAATTY	1 cut(s)	469
AcyI	GRCGYC	3 cut(s)	239, 408, 455
AfiI	CCNNNNNNNGG	1 cut(s)	207
AflIII	ACRYGT	1 cut(s)	354
AgsI	TTSAA	1 cut(s)	42
AjnI	CCWGG	1 cut(s)	462
AloI	GAACNNNNNNTCC	4 cut(s)	308, 309, 340, 341
AluBI	AGCT	1 cut(s)	346
AluI	AGCT	1 cut(s)	346
Alw26I	GTCTC	1 cut(s)	216
Ama87I	CYCGRG	1 cut(s)	255
AoxI	GGCC	3 cut(s)	289, 337, 396
ApeKI	GCWGC	2 cut(s)	91, 343
ApoI	RAATTY	1 cut(s)	469
ArsI	GACNNNNNNTTYG	2 cut(s)	440, 472
AspLEI	GCGC	3 cut(s)	72, 301, 303
AspS9I	GGNCC	2 cut(s)	290, 396
AsuC2I	CCSGG	1 cut(s)	314
AsuHPI	GGTGA	3 cut(s)	416, 423, 478
AvaI	CYCGRG	1 cut(s)	255
BbsI	GAAGAC	2 cut(s)	30, 339
BbvI	GCAGC	2 cut(s)	103, 355
BceAI	ACGGC	3 cut(s)	257, 352, 395
BciT130I	CCWGG	1 cut(s)	464
BciVI	GTATCC	2 cut(s)	147, 507
BclI	TGATCA	1 cut(s)	121
BcnI	CCSGG	1 cut(s)	314
BcoDI	GTCTC	1 cut(s)	216
BfuI	GTATCC	2 cut(s)	147, 507
BisI	GCNGC	5 cut(s)	92, 249, 252, 344, 363
BlsI	GCNGC	5 cut(s)	93, 250, 253, 345, 364
Bme1390I	CCNGG	2 cut(s)	314, 464
BmeT110I	CYCGRG	1 cut(s)	255
BmgT120I	GGNCC	2 cut(s)	290, 396
BmiI	GGNNCC	1 cut(s)	397
BmrFI	CCNGG	2 cut(s)	314, 464
BpiI	GAAGAC	2 cut(s)	30, 339
BpuMI	CCSGG	1 cut(s)	314
BsaHI	GRCGYC	3 cut(s)	239, 408, 455
BsaI	GGTCTC	1 cut(s)	216
BsaJI	CCNNGG	1 cut(s)	399
Bsc4I	CCNNNNNNNGG	1 cut(s)	207
Bse118I	RCCGGY	1 cut(s)	241
BseBI	CCWGG	1 cut(s)	464
BseDI	CCNNGG	1 cut(s)	399
BseGI	GGATG	1 cut(s)	165
BseLI	CCNNNNNNNGG	1 cut(s)	207
BseMII	CTCAG	2 cut(s)	177, 298
BsePI	GCGCGC	1 cut(s)	299
BseXI	GCAGC	2 cut(s)	103, 355
Bsh1236I	CGCG	1 cut(s)	301
BshFI	GGCC	3 cut(s)	291, 339, 398
BsiHKCI	CYCGRG	1 cut(s)	255
BsiSI	CCGG	2 cut(s)	242, 314
BslI	CCNNNNNNNGG	1 cut(s)	207
BsmAI	GTCTC	1 cut(s)	216
BsnI	GGCC	3 cut(s)	291, 339, 398
Bso31I	GGTCTC	1 cut(s)	216
BsoBI	CYCGRG	1 cut(s)	255
Bsp143I	GATC	1 cut(s)	121
BspACI	CCGC	5 cut(s)	249, 252, 270, 362, 427
BspANI	GGCC	3 cut(s)	291, 339, 398
BspCNI	CTCAG	2 cut(s)	178, 297
BspFNI	CGCG	1 cut(s)	301
BspLI	GGNNCC	1 cut(s)	397
BspTNI	GGTCTC	1 cut(s)	216
BsrBI	CCGCTC	1 cut(s)	429
BsrFI	RCCGGY	1 cut(s)	241
BssAI	RCCGGY	1 cut(s)	241
BssECI	CCNNGG	1 cut(s)	399
BssHII	GCGCGC	1 cut(s)	299
BssMI	GATC	1 cut(s)	121
BssNI	GRCGYC	3 cut(s)	239, 408, 455
BssT1I	CCWWGG	1 cut(s)	399
Bst2UI	CCWGG	1 cut(s)	464
BstACI	GRCGYC	3 cut(s)	239, 408, 455
BstC8I	GCNNGC	3 cut(s)	74, 301, 341
BstDEI	CTNAG	2 cut(s)	186, 284
BstF5I	GGATG	1 cut(s)	165
BstFNI	CGCG	1 cut(s)	301
BstHHI	GCGC	3 cut(s)	72, 301, 303
BstKTI	GATC	1 cut(s)	124
BstMAI	GTCTC	1 cut(s)	216
BstMBI	GATC	1 cut(s)	121
BstMWI	GCNNNNNNNGC	3 cut(s)	88, 97, 257
BstNI	CCWGG	1 cut(s)	464
BstNSI	RCATGY	1 cut(s)	358
BstSCI	CCNGG	2 cut(s)	312, 462
BstUI	CGCG	1 cut(s)	301
BstV1I	GCAGC	2 cut(s)	103, 355
BstV2I	GAAGAC	2 cut(s)	30, 339
BsuI	GTATCC	2 cut(s)	147, 507
BsuRI	GGCC	3 cut(s)	291, 339, 398
BtsCI	GGATG	1 cut(s)	165
Cac8I	GCNNGC	3 cut(s)	74, 301, 341
CfoI	GCGC	3 cut(s)	72, 301, 303
Cfr10I	RCCGGY	1 cut(s)	241
Cfr13I	GGNCC	2 cut(s)	290, 396
CseI	GACGC	2 cut(s)	247, 416
CviAII	CATG	2 cut(s)	119, 355
DdeI	CTNAG	2 cut(s)	186, 284
DpnI	GATC	1 cut(s)	123
DpnII	GATC	1 cut(s)	121
DraI	TTTAAA	1 cut(s)	489
EaeI	YGGCCR	1 cut(s)	337
Eco130I	CCWWGG	1 cut(s)	399
Eco31I	GGTCTC	1 cut(s)	216
Eco88I	CYCGRG	1 cut(s)	255
EcoO109I	RGGNCCY	1 cut(s)	290
EcoRI	GAATTC	1 cut(s)	469
EcoRII	CCWGG	1 cut(s)	462
EcoT14I	CCWWGG	1 cut(s)	399
ErhI	CCWWGG	1 cut(s)	399
FaeI	CATG	2 cut(s)	122, 358
FaiI	YATR	4 cut(s)	62, 120, 262, 356
FatI	CATG	2 cut(s)	118, 354
FbaI	TGATCA	1 cut(s)	121
FblI	GTMKAC	1 cut(s)	405
Fnu4HI	GCNGC	5 cut(s)	92, 249, 252, 344, 363
FokI	GGATG	1 cut(s)	172
Fsp4HI	GCNGC	5 cut(s)	92, 249, 252, 344, 363
GlaI	GCGC	3 cut(s)	71, 300, 302
GluI	GCNGC	5 cut(s)	92, 249, 252, 344, 363
HaeIII	GGCC	3 cut(s)	291, 339, 398
HapII	CCGG	2 cut(s)	242, 314
HgaI	GACGC	2 cut(s)	247, 416
HhaI	GCGC	3 cut(s)	72, 301, 303
Hin1I	GRCGYC	3 cut(s)	239, 408, 455
Hin1II	CATG	2 cut(s)	122, 358
Hin6I	GCGC	3 cut(s)	70, 299, 301
HinP1I	GCGC	3 cut(s)	70, 299, 301
HincII	GTYRAC	1 cut(s)	406
HindII	GTYRAC	1 cut(s)	406
HinfI	GANTC	1 cut(s)	216
HpaII	CCGG	2 cut(s)	242, 314
HphI	GGTGA	3 cut(s)	416, 423, 478
Hpy166II	GTNNAC	1 cut(s)	406
Hpy188I	TCNGA	2 cut(s)	287, 517
Hpy188III	TCNNGA	3 cut(s)	134, 213, 500
Hpy8I	GTNNAC	1 cut(s)	406
Hpy99I	CGWCG	5 cut(s)	241, 410, 416, 457, 460
HpyAV	CCTTC	2 cut(s)	303, 373
HpyCH4IV	ACGT	1 cut(s)	455
HpyF10VI	GCNNNNNNNGC	3 cut(s)	88, 97, 257
HpyF3I	CTNAG	2 cut(s)	186, 284
HpySE526I	ACGT	1 cut(s)	455
Hsp92I	GRCGYC	3 cut(s)	239, 408, 455
Hsp92II	CATG	2 cut(s)	122, 358
HspAI	GCGC	3 cut(s)	70, 299, 301
Ksp22I	TGATCA	1 cut(s)	121
Kzo9I	GATC	1 cut(s)	121
Lsp1109I	GCAGC	2 cut(s)	103, 355
MaeII	ACGT	1 cut(s)	455
MalI	GATC	1 cut(s)	123
MbiI	CCGCTC	1 cut(s)	429
MboI	GATC	1 cut(s)	121
MboII	GAAGA	5 cut(s)	15, 21, 24, 30, 344
MluCI	AATT	2 cut(s)	469, 523
MnlI	CCTC	9 cut(s)	72, 104, 143, 156, 201, 281, 293, 314, 382
MseI	TTAA	2 cut(s)	488, 526
MspI	CCGG	2 cut(s)	242, 314
MspR9I	CCNGG	2 cut(s)	314, 464
MvaI	CCWGG	1 cut(s)	464
MvnI	CGCG	1 cut(s)	301
MwoI	GCNNNNNNNGC	3 cut(s)	88, 97, 257
NciI	CCSGG	1 cut(s)	314
NdeII	GATC	1 cut(s)	121
NlaIII	CATG	2 cut(s)	122, 358
NlaIV	GGNNCC	1 cut(s)	397
NspI	RCATGY	1 cut(s)	358
PauI	GCGCGC	1 cut(s)	299
PciI	ACATGT	1 cut(s)	354
PcsI	WCGNNNNNNNCGW	4 cut(s)	270, 365, 411, 452
PfeI	GAWTC	1 cut(s)	216
PflFI	GACNNNGTC	1 cut(s)	410
PfoI	TCCNGGA	1 cut(s)	312
PkrI	GCNGC	5 cut(s)	93, 250, 253, 345, 364
PscI	ACATGT	1 cut(s)	354
Psp6I	CCWGG	1 cut(s)	462
PspGI	CCWGG	1 cut(s)	462
PspN4I	GGNNCC	1 cut(s)	397
PspPI	GGNCC	2 cut(s)	290, 396
PsyI	GACNNNGTC	1 cut(s)	410
PteI	GCGCGC	1 cut(s)	299
SalI	GTCGAC	1 cut(s)	404
SaqAI	TTAA	2 cut(s)	488, 526
SatI	GCNGC	5 cut(s)	92, 249, 252, 344, 363
Sau3AI	GATC	1 cut(s)	121
Sau96I	GGNCC	2 cut(s)	290, 396
ScrFI	CCNGG	2 cut(s)	314, 464
SetI	ASST	6 cut(s)	212, 285, 348, 393, 405, 458
SmiI	ATTTAAAT	1 cut(s)	489
Sse9I	AATT	2 cut(s)	469, 523
SsiI	CCGC	5 cut(s)	249, 252, 270, 362, 427
StyD4I	CCNGG	2 cut(s)	312, 462
StyI	CCWWGG	1 cut(s)	399
SwaI	ATTTAAAT	1 cut(s)	489
TaiI	ACGT	1 cut(s)	458
TaqI	TCGA	6 cut(s)	214, 368, 405, 414, 446, 458
TasI	AATT	2 cut(s)	469, 523
TauI	GCSGC	3 cut(s)	251, 254, 365
TfiI	GAWTC	1 cut(s)	216
Tru1I	TTAA	2 cut(s)	488, 526
Tru9I	TTAA	2 cut(s)	488, 526
TseI	GCWGC	2 cut(s)	91, 343
TspDTI	ATGAA	1 cut(s)	15
TspGWI	ACGGA	2 cut(s)	172, 401
Tth111I	GACNNNGTC	1 cut(s)	410
XapI	RAATTY	1 cut(s)	469
XceI	RCATGY	1 cut(s)	358
XmiI	GTMKAC	1 cut(s)	405
ZraI	GACGTC	1 cut(s)	456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.