pycom15g07350

ethylene-responsive transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0009924
Physical Location & Seq
Forward (+)
4495448 .. 4495930
483 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g07350.1

Sequence Viewer

Length: 483 bp
ATGGAAGGCGATTACTGCTGCTCTTCGTCGTCTTCTTCCTCAACGTCCACGAGCATGGAGAAGCGCAAGCATCCCGATCACCGCCAAGAAAAGCAATACAGAGGAATACGGATGAGGAAGTGGGGGAAGTGGGTGGCGGAGATTCGAGAACCCAACAAGCGCTCTCGAATTTGGCTCGGCTCCTACACGACCCCCATGGCTGCCGCCCGAGCTTACGACACCGCCGTTTTCTGTCTTCGAGGCCCTTCGGCCCGCCTCAACTTCCCGGAACTTGTATTCCAAGACGACGGCCAGCAGCTCCACGACATGTCGGCGGCTTCGATACGGAAGAAGGCTACGGAGGTCGGGGCTAAGGTCGACGCTGTTCAAACCGCTCTCCGCGCATCTCCGACGTCGCAGTCCAAAACAACGTTGAGCCGGGGTGGCTCTTTGAAGCCCGACTTAAATGAGTACCCAGACCCAGAAAACTCCGATGAAAGTTAA

Protein Analysis

161

Amino Acids

17.89

Weight (kDa)

9.19

Isoelectric Point (pI)

47.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 32 - 81 4.8e-12 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009924)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G46768 AT1G46768 AT1G46768 AT4G06746
fragaria_vesca FvH4_2g34020
malus_domestica MD08G1096000.v1.1 MD15G1078900.v1.1
prunus_persica Prupe.1G432000_v2.0.a1
pyrus_communis pycom08g07820 pycom15g07350
rosa_chinensis RchiOBHm_Chr6g0308371
rosa_laevigata RLG00000010647
rosa_multiflora Rmu_sc0005523.1_g000015
rosa_roxburghii Rroxscaffold_7G00160190
rosa_rugosa Rorug06G0366300 Rorug06G0366400
rosa_samantha Rh6AG475700 Rh6BG486000 Rh6CG491200 Rh6DG477500
rosa_wichuraiana Rw6G041460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 397
AatII GACGTC 1 cut(s) 395
AccBSI CCGCTC 1 cut(s) 374
AccI GTMKAC 1 cut(s) 357
AccII CGCG 1 cut(s) 381
AciI CCGC 8 cut(s) 82, 137, 204, 222, 253, 314, 372, 379
AclI AACGTT 1 cut(s) 410
AcoI YGGCCR 1 cut(s) 289
AcsI RAATTY 1 cut(s) 168
AcyI GRCGYC 1 cut(s) 392
AfaI GTAC 1 cut(s) 452
AfeI AGCGCT 1 cut(s) 161
AflIII ACRYGT 1 cut(s) 306
AgsI TTSAA 2 cut(s) 368, 433
AloI GAACNNNNNNTCC 2 cut(s) 261, 293
AluBI AGCT 2 cut(s) 212, 298
AluI AGCT 2 cut(s) 212, 298
Ama87I CYCGRG 1 cut(s) 207
Aor51HI AGCGCT 1 cut(s) 161
AoxI GGCC 3 cut(s) 241, 249, 289
ApeKI GCWGC 3 cut(s) 18, 200, 295
ApoI RAATTY 1 cut(s) 168
AspLEI GCGC 3 cut(s) 66, 162, 383
AspS9I GGNCC 2 cut(s) 242, 250
AsuC2I CCSGG 2 cut(s) 266, 419
AsuHPI GGTGA 1 cut(s) 71
AvaI CYCGRG 1 cut(s) 207
BauI CACGAG 1 cut(s) 49
BbsI GAAGAC 2 cut(s) 24, 227
BbvI GCAGC 3 cut(s) 5, 187, 307
BceAI ACGGC 2 cut(s) 209, 304
BcnI CCSGG 2 cut(s) 266, 419
BfoI RGCGCY 1 cut(s) 163
BglI GCCNNNNNGGC 1 cut(s) 423
BisI GCNGC 5 cut(s) 19, 201, 204, 296, 315
BlsI GCNGC 5 cut(s) 20, 202, 205, 297, 316
Bme1390I CCNGG 2 cut(s) 266, 419
BmeT110I CYCGRG 1 cut(s) 207
BmgT120I GGNCC 2 cut(s) 242, 250
BmiI GGNNCC 1 cut(s) 181
BmrFI CCNGG 2 cut(s) 266, 419
BmsI GCATC 2 cut(s) 79, 392
BpiI GAAGAC 2 cut(s) 24, 227
Bpu10I CCTNAGC 1 cut(s) 351
BpuMI CCSGG 2 cut(s) 266, 419
BsaHI GRCGYC 1 cut(s) 392
BsaJI CCNNGG 2 cut(s) 195, 418
BseDI CCNNGG 2 cut(s) 195, 418
BseGI GGATG 2 cut(s) 70, 117
BseXI GCAGC 3 cut(s) 5, 187, 307
Bsh1236I CGCG 1 cut(s) 381
BshFI GGCC 3 cut(s) 243, 251, 291
BsiHKCI CYCGRG 1 cut(s) 207
BsiSI CCGG 2 cut(s) 266, 418
BsnI GGCC 3 cut(s) 243, 251, 291
BsoBI CYCGRG 1 cut(s) 207
Bsp143I GATC 1 cut(s) 76
Bsp19I CCATGG 1 cut(s) 195
BspACI CCGC 8 cut(s) 82, 137, 204, 222, 253, 314, 372, 379
BspANI GGCC 3 cut(s) 243, 251, 291
BspFNI CGCG 1 cut(s) 381
BspLI GGNNCC 1 cut(s) 181
BspQI GCTCTTC 1 cut(s) 28
BsrBI CCGCTC 1 cut(s) 374
BssECI CCNNGG 2 cut(s) 195, 418
BssMI GATC 1 cut(s) 76
BssNI GRCGYC 1 cut(s) 392
BssSI CACGAG 1 cut(s) 49
BssT1I CCWWGG 1 cut(s) 195
Bst2BI CACGAG 1 cut(s) 49
Bst6I CTCTTC 1 cut(s) 28
BstACI GRCGYC 1 cut(s) 392
BstC8I GCNNGC 3 cut(s) 68, 253, 293
BstDEI CTNAG 1 cut(s) 351
BstDSI CCRYGG 1 cut(s) 195
BstF5I GGATG 2 cut(s) 70, 117
BstFNI CGCG 1 cut(s) 381
BstH2I RGCGCY 1 cut(s) 163
BstHHI GCGC 3 cut(s) 66, 162, 383
BstKTI GATC 1 cut(s) 79
BstMBI GATC 1 cut(s) 76
BstMWI GCNNNNNNNGC 4 cut(s) 15, 209, 380, 423
BstNSI RCATGY 1 cut(s) 310
BstSCI CCNGG 2 cut(s) 264, 417
BstUI CGCG 1 cut(s) 381
BstV1I GCAGC 3 cut(s) 5, 187, 307
BstV2I GAAGAC 2 cut(s) 24, 227
BstXI CCANNNNNNTGG 1 cut(s) 55
BsuRI GGCC 3 cut(s) 243, 251, 291
BtgI CCRYGG 1 cut(s) 195
BtsCI GGATG 2 cut(s) 70, 117
Cac8I GCNNGC 3 cut(s) 68, 253, 293
CfoI GCGC 3 cut(s) 66, 162, 383
Cfr13I GGNCC 2 cut(s) 242, 250
CseI GACGC 1 cut(s) 368
Csp6I GTAC 1 cut(s) 451
CviAII CATG 3 cut(s) 55, 196, 307
CviQI GTAC 1 cut(s) 451
DdeI CTNAG 1 cut(s) 351
DpnI GATC 1 cut(s) 78
DpnII GATC 1 cut(s) 76
DrdI GACNNNNNNGTC 1 cut(s) 397
DseDI GACNNNNNNGTC 1 cut(s) 397
EaeI YGGCCR 1 cut(s) 289
Eam1104I CTCTTC 1 cut(s) 28
EarI CTCTTC 1 cut(s) 28
EciI GGCGGA 1 cut(s) 152
Eco130I CCWWGG 1 cut(s) 195
Eco47III AGCGCT 1 cut(s) 161
Eco88I CYCGRG 1 cut(s) 207
EcoO109I RGGNCCY 1 cut(s) 242
EcoT14I CCWWGG 1 cut(s) 195
ErhI CCWWGG 1 cut(s) 195
FaeI CATG 3 cut(s) 58, 199, 310
FaiI YATR 3 cut(s) 56, 197, 308
FalI AAGNNNNNCTT 2 cut(s) 425, 457
FatI CATG 3 cut(s) 54, 195, 306
FauI CCCGC 1 cut(s) 260
FblI GTMKAC 1 cut(s) 357
Fnu4HI GCNGC 5 cut(s) 19, 201, 204, 296, 315
FokI GGATG 2 cut(s) 57, 124
Fsp4HI GCNGC 5 cut(s) 19, 201, 204, 296, 315
GlaI GCGC 3 cut(s) 65, 161, 382
GluI GCNGC 5 cut(s) 19, 201, 204, 296, 315
HaeII RGCGCY 1 cut(s) 163
HaeIII GGCC 3 cut(s) 243, 251, 291
HapII CCGG 2 cut(s) 266, 418
HgaI GACGC 1 cut(s) 368
HhaI GCGC 3 cut(s) 66, 162, 383
Hin1I GRCGYC 1 cut(s) 392
Hin1II CATG 3 cut(s) 58, 199, 310
Hin6I GCGC 3 cut(s) 64, 160, 381
HinP1I GCGC 3 cut(s) 64, 160, 381
HincII GTYRAC 1 cut(s) 358
HindII GTYRAC 1 cut(s) 358
HinfI GANTC 1 cut(s) 142
HpaII CCGG 2 cut(s) 266, 418
HphI GGTGA 1 cut(s) 71
Hpy166II GTNNAC 2 cut(s) 48, 358
Hpy188I TCNGA 2 cut(s) 390, 472
Hpy188III TCNNGA 3 cut(s) 74, 146, 165
Hpy8I GTNNAC 2 cut(s) 48, 358
Hpy99I CGWCG 5 cut(s) 31, 290, 362, 394, 397
HpyAV CCTTC 2 cut(s) 255, 325
HpyCH4IV ACGT 3 cut(s) 44, 392, 410
HpyF10VI GCNNNNNNNGC 4 cut(s) 15, 209, 380, 423
HpyF3I CTNAG 1 cut(s) 351
HpySE526I ACGT 3 cut(s) 44, 392, 410
Hsp92I GRCGYC 1 cut(s) 392
Hsp92II CATG 3 cut(s) 58, 199, 310
HspAI GCGC 3 cut(s) 64, 160, 381
Kzo9I GATC 1 cut(s) 76
LguI GCTCTTC 1 cut(s) 28
LmnI GCTCC 2 cut(s) 185, 303
LpnPI CCDG 5 cut(s) 279, 305, 431, 468, 474
Lsp1109I GCAGC 3 cut(s) 5, 187, 307
LweI GCATC 2 cut(s) 79, 392
MaeII ACGT 3 cut(s) 44, 392, 410
MalI GATC 1 cut(s) 78
MbiI CCGCTC 1 cut(s) 374
MboI GATC 1 cut(s) 76
MboII GAAGA 5 cut(s) 15, 24, 27, 227, 340
MluCI AATT 1 cut(s) 168
MmeI TCCRAC 1 cut(s) 413
MnlI CCTC 6 cut(s) 49, 95, 108, 233, 266, 334
MseI TTAA 2 cut(s) 443, 481
MslI CAYNNNNRTG 1 cut(s) 53
MspI CCGG 2 cut(s) 266, 418
MspR9I CCNGG 2 cut(s) 266, 419
MvnI CGCG 1 cut(s) 381
MwoI GCNNNNNNNGC 4 cut(s) 15, 209, 380, 423
NciI CCSGG 2 cut(s) 266, 419
NcoI CCATGG 1 cut(s) 195
NdeII GATC 1 cut(s) 76
NlaIII CATG 3 cut(s) 58, 199, 310
NlaIV GGNNCC 1 cut(s) 181
NmeAIII GCCGAG 1 cut(s) 156
NspI RCATGY 1 cut(s) 310
PciI ACATGT 1 cut(s) 306
PciSI GCTCTTC 1 cut(s) 28
PcsI WCGNNNNNNNCGW 2 cut(s) 222, 317
PfeI GAWTC 1 cut(s) 142
PfoI TCCNGGA 1 cut(s) 264
PkrI GCNGC 5 cut(s) 20, 202, 205, 297, 316
PscI ACATGT 1 cut(s) 306
Psp1406I AACGTT 1 cut(s) 410
PspN4I GGNNCC 1 cut(s) 181
PspPI GGNCC 2 cut(s) 242, 250
RsaI GTAC 1 cut(s) 452
RsaNI GTAC 1 cut(s) 451
RseI CAYNNNNRTG 1 cut(s) 53
SalI GTCGAC 1 cut(s) 356
SapI GCTCTTC 1 cut(s) 28
SaqAI TTAA 2 cut(s) 443, 481
SatI GCNGC 5 cut(s) 19, 201, 204, 296, 315
Sau3AI GATC 1 cut(s) 76
Sau96I GGNCC 2 cut(s) 242, 250
ScrFI CCNGG 2 cut(s) 266, 419
SetI ASST 7 cut(s) 47, 214, 300, 345, 357, 395, 413
SfaNI GCATC 2 cut(s) 79, 392
SmiMI CAYNNNNRTG 1 cut(s) 53
Sse9I AATT 1 cut(s) 168
SsiI CCGC 8 cut(s) 82, 137, 204, 222, 253, 314, 372, 379
StyD4I CCNGG 2 cut(s) 264, 417
StyI CCWWGG 1 cut(s) 195
TaiI ACGT 3 cut(s) 47, 395, 413
TaqI TCGA 5 cut(s) 145, 166, 238, 320, 357
TasI AATT 1 cut(s) 168
TauI GCSGC 2 cut(s) 206, 317
TfiI GAWTC 1 cut(s) 142
Tru1I TTAA 2 cut(s) 443, 481
Tru9I TTAA 2 cut(s) 443, 481
TseI GCWGC 3 cut(s) 18, 200, 295
TspGWI ACGGA 3 cut(s) 124, 340, 353
XapI RAATTY 1 cut(s) 168
XceI RCATGY 1 cut(s) 310
XmiI GTMKAC 1 cut(s) 357
ZraI GACGTC 1 cut(s) 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.