Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009924

Physical Location & Seq

Genomic Coordinates Reverse (-)

4073717 .. 4074735

Gene Structure 1019 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G06746.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGTGATTCAATACAAACGAAAACAAGAGTTTCCTATGGTGAAAGAAGGAATGGTCATGACCGAGAAGCCAAAGAGGAATCTCATAAGCTCTAATGAGAAGCGATACAAAGGAATAAGGATGAGGAAGTGGGGCAAGTGGGTGGCTGAGATAAGAGAGCCTAATAAACGATCACGGATCTGGCTTGGTTCATACAAAACCGCCGTTGCCGCGGCACGGGCCTACGATACCGCTGTGTTTTACTTACGTGGTCCTTCGGCGAGACTCAATTTCCCTGAAGAGGTCTTTAAGGATGGAAACGGCGGTGAAGGCTTAGGAGGAGATATGTCTCCGACGTTGATACGGAAGAAGGCGGCTGAGGTGGGAGCTAGAGTCGACGCAGAGTTGCGGTTAGAGAATAGGATGGTTGAGAACTTAGACATGAATAAGTTGCCGGAGGCATATGGATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

150

Amino Acids

17.2

Weight (kDa)

9.95

Isoelectric Point (pI)

44.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	35 - 84	1.2e-11	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009924)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G46768 AT1G46768 AT1G46768 AT4G06746
fragaria_vesca	FvH4_2g34020
malus_domestica	MD08G1096000.v1.1 MD15G1078900.v1.1
prunus_persica	Prupe.1G432000_v2.0.a1
pyrus_communis	pycom08g07820 pycom15g07350
rosa_chinensis	RchiOBHm_Chr6g0308371
rosa_laevigata	RLG00000010647
rosa_multiflora	Rmu_sc0005523.1_g000015
rosa_roxburghii	Rroxscaffold_7G00160190
rosa_rugosa	Rorug06G0366300 Rorug06G0366400
rosa_samantha	Rh6AG475700 Rh6BG486000 Rh6CG491200 Rh6DG477500
rosa_wichuraiana	Rw6G041460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	375
AccII	CGCG	1 cut(s)	212
AciI	CCGC	7 cut(s)	201, 210, 212, 231, 303, 353, 388
AclWI	GGATC	1 cut(s)	185
AcuI	CTGAAG	1 cut(s)	297
AfiI	CCNNNNNNNGG	2 cut(s)	216, 280
AgsI	TTSAA	1 cut(s)	11
AluBI	AGCT	2 cut(s)	90, 368
AluI	AGCT	2 cut(s)	90, 368
Alw26I	GTCTC	2 cut(s)	256, 333
AlwI	GGATC	1 cut(s)	185
AoxI	GGCC	1 cut(s)	219
AspS9I	GGNCC	2 cut(s)	219, 251
AsuHPI	GGTGA	3 cut(s)	16, 52, 317
AvaII	GGWCC	1 cut(s)	251
BaeI	ACNNNNGTAYC	2 cut(s)	219, 252
BbvCI	CCTCAGC	1 cut(s)	357
BccI	CCATC	2 cut(s)	287, 397
BceAI	ACGGC	2 cut(s)	188, 316
BcoDI	GTCTC	2 cut(s)	256, 333
BfaI	CTAG	1 cut(s)	369
BisI	GCNGC	3 cut(s)	210, 213, 354
BlsI	GCNGC	3 cut(s)	211, 214, 355
Bme18I	GGWCC	1 cut(s)	251
BmgT120I	GGNCC	2 cut(s)	219, 251
Bpu10I	CCTNAGC	2 cut(s)	313, 357
BsaAI	YACGTR	1 cut(s)	248
BsaJI	CCNNGG	1 cut(s)	210
BsaXI	ACNNNNNCTCC	2 cut(s)	357, 387
Bsc4I	CCNNNNNNNGG	2 cut(s)	216, 280
BseDI	CCNNGG	1 cut(s)	210
BseGI	GGATG	3 cut(s)	126, 298, 408
BseLI	CCNNNNNNNGG	2 cut(s)	216, 280
BseMII	CTCAG	2 cut(s)	138, 348
BseRI	GAGGAG	1 cut(s)	333
Bsh1236I	CGCG	1 cut(s)	212
BshFI	GGCC	1 cut(s)	221
BsiSI	CCGG	1 cut(s)	434
BslI	CCNNNNNNNGG	2 cut(s)	216, 280
BsmAI	GTCTC	2 cut(s)	256, 333
BsnI	GGCC	1 cut(s)	221
Bsp143I	GATC	2 cut(s)	170, 177
BspACI	CCGC	7 cut(s)	201, 210, 212, 231, 303, 353, 388
BspANI	GGCC	1 cut(s)	221
BspCNI	CTCAG	2 cut(s)	139, 349
BspFNI	CGCG	1 cut(s)	212
BspHI	TCATGA	1 cut(s)	57
BspPI	GGATC	1 cut(s)	185
BssECI	CCNNGG	1 cut(s)	210
BssMI	GATC	2 cut(s)	170, 177
Bst6I	CTCTTC	1 cut(s)	273
BstBAI	YACGTR	1 cut(s)	248
BstDEI	CTNAG	4 cut(s)	147, 313, 357, 415
BstDSI	CCRYGG	1 cut(s)	210
BstF5I	GGATG	3 cut(s)	126, 298, 408
BstFNI	CGCG	1 cut(s)	212
BstKTI	GATC	2 cut(s)	173, 180
BstMAI	GTCTC	2 cut(s)	256, 333
BstMBI	GATC	2 cut(s)	170, 177
BstMWI	GCNNNNNNNGC	3 cut(s)	209, 218, 309
BstUI	CGCG	1 cut(s)	212
BstX2I	RGATCY	1 cut(s)	177
BstYI	RGATCY	1 cut(s)	177
BsuRI	GGCC	1 cut(s)	221
BtgI	CCRYGG	1 cut(s)	210
BtsCI	GGATG	3 cut(s)	126, 298, 408
CciI	TCATGA	1 cut(s)	57
Cfr13I	GGNCC	2 cut(s)	219, 251
Cfr42I	CCGCGG	1 cut(s)	213
CseI	GACGC	1 cut(s)	386
CviAII	CATG	2 cut(s)	58, 421
CviJI	RGCY	9 cut(s)	70, 90, 146, 160, 184, 221, 312, 356, 368
CviKI_1	RGCY	9 cut(s)	70, 90, 146, 160, 184, 221, 312, 356, 368
DdeI	CTNAG	4 cut(s)	147, 313, 357, 415
DpnI	GATC	2 cut(s)	172, 179
DpnII	GATC	2 cut(s)	170, 177
Eam1104I	CTCTTC	1 cut(s)	273
EarI	CTCTTC	1 cut(s)	273
Eco47I	GGWCC	1 cut(s)	251
Eco57I	CTGAAG	1 cut(s)	297
FaeI	CATG	2 cut(s)	61, 424
FaiI	YATR	8 cut(s)	38, 59, 86, 193, 326, 422, 442, 444
FatI	CATG	2 cut(s)	57, 420
FauNDI	CATATG	1 cut(s)	442
FblI	GTMKAC	1 cut(s)	375
Fnu4HI	GCNGC	3 cut(s)	210, 213, 354
FokI	GGATG	3 cut(s)	133, 305, 415
Fsp4HI	GCNGC	3 cut(s)	210, 213, 354
FspBI	CTAG	1 cut(s)	369
GluI	GCNGC	3 cut(s)	210, 213, 354
HaeIII	GGCC	1 cut(s)	221
HapII	CCGG	1 cut(s)	434
HgaI	GACGC	1 cut(s)	386
Hin1II	CATG	2 cut(s)	61, 424
HincII	GTYRAC	1 cut(s)	376
HindII	GTYRAC	1 cut(s)	376
HinfI	GANTC	4 cut(s)	7, 79, 264, 372
HpaII	CCGG	1 cut(s)	434
HphI	GGTGA	3 cut(s)	16, 52, 317
Hpy166II	GTNNAC	1 cut(s)	376
Hpy188I	TCNGA	1 cut(s)	333
Hpy188III	TCNNGA	1 cut(s)	58
Hpy8I	GTNNAC	1 cut(s)	376
Hpy99I	CGWCG	2 cut(s)	337, 380
HpyAV	CCTTC	4 cut(s)	41, 264, 302, 343
HpyCH4IV	ACGT	2 cut(s)	247, 335
HpyF10VI	GCNNNNNNNGC	3 cut(s)	209, 218, 309
HpyF3I	CTNAG	4 cut(s)	147, 313, 357, 415
HpySE526I	ACGT	2 cut(s)	247, 335
Hsp92II	CATG	2 cut(s)	61, 424
KspI	CCGCGG	1 cut(s)	213
Kzo9I	GATC	2 cut(s)	170, 177
LmnI	GCTCC	1 cut(s)	365
LpnPI	CCDG	3 cut(s)	166, 288, 447
MaeI	CTAG	1 cut(s)	369
MaeII	ACGT	2 cut(s)	247, 335
MalI	GATC	2 cut(s)	172, 179
MboI	GATC	2 cut(s)	170, 177
MboII	GAAGA	2 cut(s)	290, 358
MflI	RGATCY	1 cut(s)	177
MluCI	AATT	1 cut(s)	268
MlyI	GAGTC	2 cut(s)	258, 381
MmeI	TCCRAC	1 cut(s)	356
MnlI	CCTC	6 cut(s)	69, 117, 274, 311, 352, 430
MseI	TTAA	1 cut(s)	288
MspA1I	CMGCKG	2 cut(s)	212, 233
MspI	CCGG	1 cut(s)	434
MvnI	CGCG	1 cut(s)	212
MwoI	GCNNNNNNNGC	3 cut(s)	209, 218, 309
NdeI	CATATG	1 cut(s)	442
NdeII	GATC	2 cut(s)	170, 177
NlaIII	CATG	2 cut(s)	61, 424
PagI	TCATGA	1 cut(s)	57
PfeI	GAWTC	2 cut(s)	7, 79
PkrI	GCNGC	3 cut(s)	211, 214, 355
PleI	GAGTC	2 cut(s)	258, 380
PpsI	GAGTC	2 cut(s)	258, 380
Ppu21I	YACGTR	1 cut(s)	248
PspPI	GGNCC	2 cut(s)	219, 251
PsuI	RGATCY	1 cut(s)	177
SacII	CCGCGG	1 cut(s)	213
SalI	GTCGAC	1 cut(s)	374
SaqAI	TTAA	1 cut(s)	288
SatI	GCNGC	3 cut(s)	210, 213, 354
Sau3AI	GATC	2 cut(s)	170, 177
Sau96I	GGNCC	2 cut(s)	219, 251
SchI	GAGTC	2 cut(s)	258, 381
SetI	ASST	6 cut(s)	92, 250, 285, 338, 363, 370
Sfr303I	CCGCGG	1 cut(s)	213
SgrBI	CCGCGG	1 cut(s)	213
SinI	GGWCC	1 cut(s)	251
Sse9I	AATT	1 cut(s)	268
SsiI	CCGC	7 cut(s)	201, 210, 212, 231, 303, 353, 388
SspMI	CTAG	1 cut(s)	369
TaiI	ACGT	2 cut(s)	250, 338
TaqI	TCGA	1 cut(s)	375
TaqII	GACCGA	1 cut(s)	77
TasI	AATT	1 cut(s)	268
TauI	GCSGC	3 cut(s)	212, 215, 356
TfiI	GAWTC	2 cut(s)	7, 79
Tru1I	TTAA	1 cut(s)	288
Tru9I	TTAA	1 cut(s)	288
TspDTI	ATGAA	2 cut(s)	180, 437
TspGWI	ACGGA	2 cut(s)	190, 358
VpaK11BI	GGWCC	1 cut(s)	251
XmiI	GTMKAC	1 cut(s)	375
XspI	CTAG	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.