RchiOBHm_Chr6g0308371

ethylene-responsive transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0009924
Physical Location & Seq
Reverse (-)
66485325 .. 66487210
1886 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27727

Sequence Viewer

Length: 471 bp
ATGGAAGGAGAGTACAGTTGTTCGTCATCGTCTTCTTCCTCGACCACGAGCTTAGAGAAGCGCAAGAAGAGACAACATGAGCACGATGATAACCAGGAAAAGCCCTACAGAGGAATAAGGATGAGAAAGTGGGGCAAGTGGGTGGCCGAGATTAGAGAACCCAACAAGCGGTCCAGGATTTGGCTTGGTTCGTACACAACTCCTGTCGCCGCCGCCAGAGCCTACGACACCGCCGTTTTCTACCTCCGAGGCCCTTCTGCGAGACTCAACTTCCCGGAGTTAGTTTTCCAAGAAGGCCAGCTGCACGACATGTCGTCCGCTTCCATACGCAAGAAGGCCACCGAGGTTGGGGCCAAAGTCGACGCTCTCCAAACTGCTCTCCGGTCGCCGTCGTCGCAGTCGAAAACTGGCTCCCAGATTAAGCCTGATTTGAACGAATACCCGGACCCGGAAAACTCCGATGACAACTGA

Protein Analysis

156

Amino Acids

17.64

Weight (kDa)

9.18

Isoelectric Point (pI)

57.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 36 - 84 7.8e-12 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009924)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G46768 AT1G46768 AT1G46768 AT4G06746
fragaria_vesca FvH4_2g34020
malus_domestica MD08G1096000.v1.1 MD15G1078900.v1.1
prunus_persica Prupe.1G432000_v2.0.a1
pyrus_communis pycom08g07820 pycom15g07350
rosa_chinensis RchiOBHm_Chr6g0308371
rosa_laevigata RLG00000010647
rosa_multiflora Rmu_sc0005523.1_g000015
rosa_roxburghii Rroxscaffold_7G00160190
rosa_rugosa Rorug06G0366300 Rorug06G0366400
rosa_samantha Rh6AG475700 Rh6BG486000 Rh6CG491200 Rh6DG477500
rosa_wichuraiana Rw6G041460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 180
AccI GTMKAC 1 cut(s) 360
AciI CCGC 5 cut(s) 169, 210, 213, 231, 318
AcoI YGGCCR 1 cut(s) 144
AfaI GTAC 2 cut(s) 14, 194
AfiI CCNNNNNNNGG 5 cut(s) 110, 168, 180, 348, 448
AflIII ACRYGT 1 cut(s) 309
AgsI TTSAA 1 cut(s) 433
AhdI GACNNNNNGTC 1 cut(s) 313
AjnI CCWGG 2 cut(s) 93, 173
AluBI AGCT 2 cut(s) 51, 301
AluI AGCT 2 cut(s) 51, 301
Alw21I GWGCWC 1 cut(s) 84
Alw26I GTCTC 2 cut(s) 64, 256
AoxI GGCC 5 cut(s) 144, 250, 295, 336, 351
ApeKI GCWGC 1 cut(s) 301
AspLEI GCGC 1 cut(s) 63
AspS9I GGNCC 4 cut(s) 171, 251, 351, 445
AsuC2I CCSGG 3 cut(s) 275, 443, 449
AvaII GGWCC 2 cut(s) 171, 445
BauI CACGAG 1 cut(s) 46
BbsI GAAGAC 1 cut(s) 24
Bbv12I GWGCWC 1 cut(s) 84
BbvI GCAGC 1 cut(s) 288
BceAI ACGGC 2 cut(s) 218, 373
BciT130I CCWGG 2 cut(s) 95, 175
BcnI CCSGG 3 cut(s) 275, 443, 449
BcoDI GTCTC 2 cut(s) 64, 256
BfmI CTRYAG 1 cut(s) 106
BisI GCNGC 3 cut(s) 210, 213, 302
BlsI GCNGC 3 cut(s) 211, 214, 303
Bme1390I CCNGG 5 cut(s) 95, 175, 275, 443, 449
Bme18I GGWCC 2 cut(s) 171, 445
BmeRI GACNNNNNGTC 1 cut(s) 313
BmgT120I GGNCC 4 cut(s) 171, 251, 351, 445
BmiI GGNNCC 3 cut(s) 352, 412, 447
BmrFI CCNGG 5 cut(s) 95, 175, 275, 443, 449
BpiI GAAGAC 1 cut(s) 24
BpuMI CCSGG 3 cut(s) 275, 443, 449
BsaJI CCNNGG 2 cut(s) 247, 342
BsaWI WCCGGW 1 cut(s) 381
Bsc4I CCNNNNNNNGG 5 cut(s) 110, 168, 180, 348, 448
Bse1I ACTGG 1 cut(s) 412
BseBI CCWGG 2 cut(s) 95, 175
BseDI CCNNGG 2 cut(s) 247, 342
BseGI GGATG 1 cut(s) 126
BseLI CCNNNNNNNGG 5 cut(s) 110, 168, 180, 348, 448
BseNI ACTGG 1 cut(s) 412
BseXI GCAGC 1 cut(s) 288
BsgI GTGCAG 1 cut(s) 287
Bsh1285I CGRYCG 1 cut(s) 386
BshFI GGCC 5 cut(s) 146, 252, 297, 338, 353
BsiEI CGRYCG 1 cut(s) 386
BsiHKAI GWGCWC 1 cut(s) 84
BsiSI CCGG 4 cut(s) 275, 382, 443, 449
BslI CCNNNNNNNGG 5 cut(s) 110, 168, 180, 348, 448
BsmAI GTCTC 2 cut(s) 64, 256
BsnI GGCC 5 cut(s) 146, 252, 297, 338, 353
Bsp1286I GDGCHC 1 cut(s) 84
BspACI CCGC 5 cut(s) 169, 210, 213, 231, 318
BspANI GGCC 5 cut(s) 146, 252, 297, 338, 353
BspLI GGNNCC 3 cut(s) 352, 412, 447
BsrI ACTGG 1 cut(s) 412
BssECI CCNNGG 2 cut(s) 247, 342
BssSI CACGAG 1 cut(s) 46
Bst2BI CACGAG 1 cut(s) 46
Bst2UI CCWGG 2 cut(s) 95, 175
Bst4CI ACNGT 1 cut(s) 17
Bst6I CTCTTC 1 cut(s) 62
BstC8I GCNNGC 1 cut(s) 299
BstDEI CTNAG 1 cut(s) 52
BstF5I GGATG 1 cut(s) 126
BstHHI GCGC 1 cut(s) 63
BstMAI GTCTC 2 cut(s) 64, 256
BstMCI CGRYCG 1 cut(s) 386
BstMWI GCNNNNNNNGC 2 cut(s) 218, 394
BstNI CCWGG 2 cut(s) 95, 175
BstNSI RCATGY 1 cut(s) 313
BstSCI CCNGG 5 cut(s) 93, 173, 273, 441, 447
BstSFI CTRYAG 1 cut(s) 106
BstV1I GCAGC 1 cut(s) 288
BstV2I GAAGAC 1 cut(s) 24
BsuRI GGCC 5 cut(s) 146, 252, 297, 338, 353
BtsCI GGATG 1 cut(s) 126
Cac8I GCNNGC 1 cut(s) 299
CfoI GCGC 1 cut(s) 63
Cfr13I GGNCC 4 cut(s) 171, 251, 351, 445
CseI GACGC 1 cut(s) 371
Csp6I GTAC 2 cut(s) 13, 193
CspCI CAANNNNNGTGG 2 cut(s) 328, 363
CviAII CATG 2 cut(s) 77, 310
CviQI GTAC 2 cut(s) 13, 193
DdeI CTNAG 1 cut(s) 52
DriI GACNNNNNGTC 1 cut(s) 313
EaeI YGGCCR 1 cut(s) 144
Eam1104I CTCTTC 1 cut(s) 62
Eam1105I GACNNNNNGTC 1 cut(s) 313
EarI CTCTTC 1 cut(s) 62
Eco47I GGWCC 2 cut(s) 171, 445
EcoO109I RGGNCCY 1 cut(s) 251
EcoRII CCWGG 2 cut(s) 93, 173
FaeI CATG 2 cut(s) 80, 313
FaiI YATR 3 cut(s) 78, 311, 326
FatI CATG 2 cut(s) 76, 309
FblI GTMKAC 1 cut(s) 360
Fnu4HI GCNGC 3 cut(s) 210, 213, 302
FokI GGATG 1 cut(s) 133
Fsp4HI GCNGC 3 cut(s) 210, 213, 302
GlaI GCGC 1 cut(s) 62
GluI GCNGC 3 cut(s) 210, 213, 302
HaeIII GGCC 5 cut(s) 146, 252, 297, 338, 353
HapII CCGG 4 cut(s) 275, 382, 443, 449
HgaI GACGC 1 cut(s) 371
HhaI GCGC 1 cut(s) 63
Hin1II CATG 2 cut(s) 80, 313
Hin6I GCGC 1 cut(s) 61
HinP1I GCGC 1 cut(s) 61
HincII GTYRAC 1 cut(s) 361
HindII GTYRAC 1 cut(s) 361
HinfI GANTC 1 cut(s) 264
HpaII CCGG 4 cut(s) 275, 382, 443, 449
Hpy166II GTNNAC 2 cut(s) 195, 361
Hpy188I TCNGA 2 cut(s) 248, 460
Hpy8I GTNNAC 2 cut(s) 195, 361
Hpy99I CGWCG 3 cut(s) 365, 394, 397
HpyAV CCTTC 3 cut(s) 264, 287, 328
HpyCH4III ACNGT 1 cut(s) 17
HpyCH4V TGCA 1 cut(s) 304
HpyF10VI GCNNNNNNNGC 2 cut(s) 218, 394
HpyF3I CTNAG 1 cut(s) 52
Hsp92II CATG 2 cut(s) 80, 313
HspAI GCGC 1 cut(s) 61
LmnI GCTCC 1 cut(s) 416
Lsp1109I GCAGC 1 cut(s) 288
MboII GAAGA 3 cut(s) 24, 27, 79
MhlI GDGCHC 1 cut(s) 84
MlyI GAGTC 1 cut(s) 258
MnlI CCTC 5 cut(s) 49, 104, 242, 254, 337
MseI TTAA 1 cut(s) 420
MspA1I CMGCKG 1 cut(s) 301
MspI CCGG 4 cut(s) 275, 382, 443, 449
MspR9I CCNGG 5 cut(s) 95, 175, 275, 443, 449
MvaI CCWGG 2 cut(s) 95, 175
MwoI GCNNNNNNNGC 2 cut(s) 218, 394
NciI CCSGG 3 cut(s) 275, 443, 449
NlaIII CATG 2 cut(s) 80, 313
NlaIV GGNNCC 3 cut(s) 352, 412, 447
NmeAIII GCCGAG 1 cut(s) 172
NspI RCATGY 1 cut(s) 313
PciI ACATGT 1 cut(s) 309
PcsI WCGNNNNNNNCGW 2 cut(s) 231, 398
PflMI CCANNNNNTGG 1 cut(s) 180
PfoI TCCNGGA 2 cut(s) 173, 273
PkrI GCNGC 3 cut(s) 211, 214, 303
PleI GAGTC 1 cut(s) 258
PpsI GAGTC 1 cut(s) 258
PscI ACATGT 1 cut(s) 309
Psp6I CCWGG 2 cut(s) 93, 173
PspGI CCWGG 2 cut(s) 93, 173
PspN4I GGNNCC 3 cut(s) 352, 412, 447
PspPI GGNCC 4 cut(s) 171, 251, 351, 445
PvuII CAGCTG 1 cut(s) 301
RsaI GTAC 2 cut(s) 14, 194
RsaNI GTAC 2 cut(s) 13, 193
SalI GTCGAC 1 cut(s) 359
SaqAI TTAA 1 cut(s) 420
SatI GCNGC 3 cut(s) 210, 213, 302
Sau96I GGNCC 4 cut(s) 171, 251, 351, 445
SchI GAGTC 1 cut(s) 258
ScrFI CCNGG 5 cut(s) 95, 175, 275, 443, 449
SduI GDGCHC 1 cut(s) 84
SetI ASST 4 cut(s) 53, 246, 303, 348
SfcI CTRYAG 1 cut(s) 106
SinI GGWCC 2 cut(s) 171, 445
SsiI CCGC 5 cut(s) 169, 210, 213, 231, 318
StyD4I CCNGG 5 cut(s) 93, 173, 273, 441, 447
TaaI ACNGT 1 cut(s) 17
TaqI TCGA 3 cut(s) 41, 360, 401
TatI WGTACW 1 cut(s) 12
TauI GCSGC 2 cut(s) 212, 215
Tru1I TTAA 1 cut(s) 420
Tru9I TTAA 1 cut(s) 420
TseI GCWGC 1 cut(s) 301
Van91I CCANNNNNTGG 1 cut(s) 180
VpaK11BI GGWCC 2 cut(s) 171, 445
XceI RCATGY 1 cut(s) 313
XmiI GTMKAC 1 cut(s) 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.