Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0009924

Physical Location & Seq

Genomic Coordinates Forward (+)

6281606 .. 6282088

Gene Structure 483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g07820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGAAGGAGATTACTGCTGCTCTTCGTCGTCTTCTTCCTCAACGTCCATGAGCATGGAGAAGCGCAAGCATCCCGATCACCACCAAGAAAAGCAGTACAGAGGAATAAGGATGAGGAAGTGGGGGAAGTGGGTGGCGGAGATTCGAGAACCCAACAAGCGCTCTCGAATTTGGCTCGGCTCCTACACGACCCCCGTTGCCGCCGCCCGAGCTTACGACACGGCCGTTTTCTATCTGCGAGGCCCTTCTGCCCGCCTCAACTTCCCGGAACTTGTTTTCCAAGACGACGGCCAGCAGCTCCACGACATGTCGGCGGCTTCGATACGGAAGAAGGCGACGGAGGTCGGGGCTAAGGTCGACGCTGCCCAAACCGCTCTCCACTCATCGCCGACGTCTCCATCCAAAACGGCGTCGGGCCGGGGTGGCTCTCAGAAGCCCGATTTAAATGAGTACCCAGACCCAGAAAACTCCGATGAAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

161

Amino Acids

17.8

Weight (kDa)

8.87

Isoelectric Point (pI)

51.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	32 - 81	6.5e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009924)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G46768 AT1G46768 AT1G46768 AT4G06746
fragaria_vesca	FvH4_2g34020
malus_domestica	MD08G1096000.v1.1 MD15G1078900.v1.1
prunus_persica	Prupe.1G432000_v2.0.a1
pyrus_communis	pycom08g07820 pycom15g07350
rosa_chinensis	RchiOBHm_Chr6g0308371
rosa_laevigata	RLG00000010647
rosa_multiflora	Rmu_sc0005523.1_g000015
rosa_roxburghii	Rroxscaffold_7G00160190
rosa_rugosa	Rorug06G0366300 Rorug06G0366400
rosa_samantha	Rh6AG475700 Rh6BG486000 Rh6CG491200 Rh6DG477500
rosa_wichuraiana	Rw6G041460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	395
AccBSI	CCGCTC	1 cut(s)	374
AccI	GTMKAC	1 cut(s)	357
AciI	CCGC	6 cut(s)	137, 201, 204, 253, 314, 372
AcoI	YGGCCR	2 cut(s)	222, 289
AcsI	RAATTY	1 cut(s)	168
AcyI	GRCGYC	2 cut(s)	392, 410
AfaI	GTAC	2 cut(s)	98, 452
AfeI	AGCGCT	1 cut(s)	161
AflIII	ACRYGT	1 cut(s)	306
AloI	GAACNNNNNNTCC	2 cut(s)	261, 293
AluBI	AGCT	2 cut(s)	212, 298
AluI	AGCT	2 cut(s)	212, 298
Alw26I	GTCTC	1 cut(s)	399
Ama87I	CYCGRG	1 cut(s)	207
Aor51HI	AGCGCT	1 cut(s)	161
AoxI	GGCC	4 cut(s)	222, 241, 289, 415
ApeKI	GCWGC	3 cut(s)	18, 295, 362
ApoI	RAATTY	1 cut(s)	168
AspLEI	GCGC	2 cut(s)	66, 162
AspS9I	GGNCC	2 cut(s)	242, 415
AsuC2I	CCSGG	2 cut(s)	266, 419
AsuHPI	GGTGA	1 cut(s)	71
AvaI	CYCGRG	1 cut(s)	207
BbsI	GAAGAC	1 cut(s)	24
BbvI	GCAGC	3 cut(s)	5, 307, 349
BccI	CCATC	1 cut(s)	406
BceAI	ACGGC	4 cut(s)	209, 237, 304, 423
BcnI	CCSGG	2 cut(s)	266, 419
BcoDI	GTCTC	1 cut(s)	399
BfoI	RGCGCY	1 cut(s)	163
BglI	GCCNNNNNGGC	1 cut(s)	423
BisI	GCNGC	6 cut(s)	19, 201, 204, 296, 315, 363
BlsI	GCNGC	6 cut(s)	20, 202, 205, 297, 316, 364
Bme1390I	CCNGG	2 cut(s)	266, 419
BmeT110I	CYCGRG	1 cut(s)	207
BmgT120I	GGNCC	2 cut(s)	242, 415
BmiI	GGNNCC	1 cut(s)	181
BmrFI	CCNGG	2 cut(s)	266, 419
BmsI	GCATC	1 cut(s)	79
BoxI	GACNNNNGTC	1 cut(s)	341
BpiI	GAAGAC	1 cut(s)	24
Bpu10I	CCTNAGC	1 cut(s)	351
BpuMI	CCSGG	2 cut(s)	266, 419
BsaHI	GRCGYC	2 cut(s)	392, 410
BsaJI	CCNNGG	1 cut(s)	418
BseDI	CCNNGG	1 cut(s)	418
BseGI	GGATG	3 cut(s)	70, 117, 398
BseMII	CTCAG	1 cut(s)	443
BseX3I	CGGCCG	1 cut(s)	222
BseXI	GCAGC	3 cut(s)	5, 307, 349
Bsh1285I	CGRYCG	1 cut(s)	225
BshFI	GGCC	4 cut(s)	224, 243, 291, 417
BsiEI	CGRYCG	1 cut(s)	225
BsiHKCI	CYCGRG	1 cut(s)	207
BsiSI	CCGG	2 cut(s)	266, 418
BsmAI	GTCTC	1 cut(s)	399
BsmBI	CGTCTC	1 cut(s)	399
BsnI	GGCC	4 cut(s)	224, 243, 291, 417
BsoBI	CYCGRG	1 cut(s)	207
Bsp143I	GATC	1 cut(s)	76
BspACI	CCGC	6 cut(s)	137, 201, 204, 253, 314, 372
BspANI	GGCC	4 cut(s)	224, 243, 291, 417
BspCNI	CTCAG	1 cut(s)	442
BspLI	GGNNCC	1 cut(s)	181
BspQI	GCTCTTC	1 cut(s)	28
BsrBI	CCGCTC	1 cut(s)	374
BssECI	CCNNGG	1 cut(s)	418
BssMI	GATC	1 cut(s)	76
BssNI	GRCGYC	2 cut(s)	392, 410
Bst6I	CTCTTC	1 cut(s)	28
BstACI	GRCGYC	2 cut(s)	392, 410
BstC8I	GCNNGC	3 cut(s)	68, 253, 293
BstDEI	CTNAG	2 cut(s)	351, 429
BstF5I	GGATG	3 cut(s)	70, 117, 398
BstH2I	RGCGCY	1 cut(s)	163
BstHHI	GCGC	2 cut(s)	66, 162
BstKTI	GATC	1 cut(s)	79
BstMAI	GTCTC	1 cut(s)	399
BstMBI	GATC	1 cut(s)	76
BstMCI	CGRYCG	1 cut(s)	225
BstMWI	GCNNNNNNNGC	3 cut(s)	209, 371, 423
BstNSI	RCATGY	1 cut(s)	310
BstPAI	GACNNNNGTC	1 cut(s)	341
BstSCI	CCNGG	2 cut(s)	264, 417
BstV1I	GCAGC	3 cut(s)	5, 307, 349
BstV2I	GAAGAC	1 cut(s)	24
BstXI	CCANNNNNNTGG	1 cut(s)	55
BstZI	CGGCCG	1 cut(s)	222
BsuRI	GGCC	4 cut(s)	224, 243, 291, 417
BtgZI	GCGATG	1 cut(s)	369
BtsCI	GGATG	3 cut(s)	70, 117, 398
Cac8I	GCNNGC	3 cut(s)	68, 253, 293
CfoI	GCGC	2 cut(s)	66, 162
Cfr13I	GGNCC	2 cut(s)	242, 415
CseI	GACGC	2 cut(s)	368, 399
Csp6I	GTAC	2 cut(s)	97, 451
CviAII	CATG	3 cut(s)	49, 55, 307
CviQI	GTAC	2 cut(s)	97, 451
DdeI	CTNAG	2 cut(s)	351, 429
DpnI	GATC	1 cut(s)	78
DpnII	GATC	1 cut(s)	76
DraI	TTTAAA	1 cut(s)	444
EaeI	YGGCCR	2 cut(s)	222, 289
EagI	CGGCCG	1 cut(s)	222
Eam1104I	CTCTTC	1 cut(s)	28
EarI	CTCTTC	1 cut(s)	28
EciI	GGCGGA	1 cut(s)	152
EclXI	CGGCCG	1 cut(s)	222
Eco47III	AGCGCT	1 cut(s)	161
Eco52I	CGGCCG	1 cut(s)	222
Eco88I	CYCGRG	1 cut(s)	207
EcoO109I	RGGNCCY	1 cut(s)	242
Esp3I	CGTCTC	1 cut(s)	399
FaeI	CATG	3 cut(s)	52, 58, 310
FaiI	YATR	3 cut(s)	50, 56, 308
FatI	CATG	3 cut(s)	48, 54, 306
FauI	CCCGC	1 cut(s)	260
FblI	GTMKAC	1 cut(s)	357
Fnu4HI	GCNGC	6 cut(s)	19, 201, 204, 296, 315, 363
FokI	GGATG	3 cut(s)	57, 124, 385
Fsp4HI	GCNGC	6 cut(s)	19, 201, 204, 296, 315, 363
GlaI	GCGC	2 cut(s)	65, 161
GluI	GCNGC	6 cut(s)	19, 201, 204, 296, 315, 363
HaeII	RGCGCY	1 cut(s)	163
HaeIII	GGCC	4 cut(s)	224, 243, 291, 417
HapII	CCGG	2 cut(s)	266, 418
HgaI	GACGC	2 cut(s)	368, 399
HhaI	GCGC	2 cut(s)	66, 162
Hin1I	GRCGYC	2 cut(s)	392, 410
Hin1II	CATG	3 cut(s)	52, 58, 310
Hin6I	GCGC	2 cut(s)	64, 160
HinP1I	GCGC	2 cut(s)	64, 160
HincII	GTYRAC	1 cut(s)	358
HindII	GTYRAC	1 cut(s)	358
HinfI	GANTC	1 cut(s)	142
HpaII	CCGG	2 cut(s)	266, 418
HphI	GGTGA	1 cut(s)	71
Hpy166II	GTNNAC	1 cut(s)	358
Hpy188I	TCNGA	2 cut(s)	432, 472
Hpy188III	TCNNGA	3 cut(s)	74, 146, 165
Hpy8I	GTNNAC	1 cut(s)	358
Hpy99I	CGWCG	6 cut(s)	31, 290, 340, 362, 394, 415
HpyAV	CCTTC	2 cut(s)	255, 325
HpyCH4IV	ACGT	2 cut(s)	44, 392
HpyF10VI	GCNNNNNNNGC	3 cut(s)	209, 371, 423
HpyF3I	CTNAG	2 cut(s)	351, 429
HpySE526I	ACGT	2 cut(s)	44, 392
Hsp92I	GRCGYC	2 cut(s)	392, 410
Hsp92II	CATG	3 cut(s)	52, 58, 310
HspAI	GCGC	2 cut(s)	64, 160
Kzo9I	GATC	1 cut(s)	76
LguI	GCTCTTC	1 cut(s)	28
LmnI	GCTCC	2 cut(s)	185, 303
LpnPI	CCDG	5 cut(s)	279, 305, 431, 468, 474
Lsp1109I	GCAGC	3 cut(s)	5, 307, 349
LweI	GCATC	1 cut(s)	79
MaeII	ACGT	2 cut(s)	44, 392
MalI	GATC	1 cut(s)	78
MbiI	CCGCTC	1 cut(s)	374
MboI	GATC	1 cut(s)	76
MboII	GAAGA	4 cut(s)	15, 24, 27, 340
MluCI	AATT	1 cut(s)	168
MnlI	CCTC	6 cut(s)	49, 95, 108, 233, 266, 334
MseI	TTAA	2 cut(s)	443, 481
MslI	CAYNNNNRTG	1 cut(s)	53
MspI	CCGG	2 cut(s)	266, 418
MspR9I	CCNGG	2 cut(s)	266, 419
MwoI	GCNNNNNNNGC	3 cut(s)	209, 371, 423
NciI	CCSGG	2 cut(s)	266, 419
NdeII	GATC	1 cut(s)	76
NlaIII	CATG	3 cut(s)	52, 58, 310
NlaIV	GGNNCC	1 cut(s)	181
NmeAIII	GCCGAG	1 cut(s)	156
NspI	RCATGY	1 cut(s)	310
PciI	ACATGT	1 cut(s)	306
PciSI	GCTCTTC	1 cut(s)	28
PcsI	WCGNNNNNNNCGW	2 cut(s)	222, 317
PfeI	GAWTC	1 cut(s)	142
PfoI	TCCNGGA	1 cut(s)	264
PkrI	GCNGC	6 cut(s)	20, 202, 205, 297, 316, 364
PscI	ACATGT	1 cut(s)	306
PshAI	GACNNNNGTC	1 cut(s)	341
PspN4I	GGNNCC	1 cut(s)	181
PspPI	GGNCC	2 cut(s)	242, 415
RsaI	GTAC	2 cut(s)	98, 452
RsaNI	GTAC	2 cut(s)	97, 451
RseI	CAYNNNNRTG	1 cut(s)	53
SalI	GTCGAC	1 cut(s)	356
SapI	GCTCTTC	1 cut(s)	28
SaqAI	TTAA	2 cut(s)	443, 481
SatI	GCNGC	6 cut(s)	19, 201, 204, 296, 315, 363
Sau3AI	GATC	1 cut(s)	76
Sau96I	GGNCC	2 cut(s)	242, 415
ScrFI	CCNGG	2 cut(s)	266, 419
SetI	ASST	6 cut(s)	47, 214, 300, 345, 357, 395
SfaNI	GCATC	1 cut(s)	79
SmiI	ATTTAAAT	1 cut(s)	444
SmiMI	CAYNNNNRTG	1 cut(s)	53
Sse9I	AATT	1 cut(s)	168
SsiI	CCGC	6 cut(s)	137, 201, 204, 253, 314, 372
StyD4I	CCNGG	2 cut(s)	264, 417
SwaI	ATTTAAAT	1 cut(s)	444
TaiI	ACGT	2 cut(s)	47, 395
TaqI	TCGA	4 cut(s)	145, 166, 320, 357
TasI	AATT	1 cut(s)	168
TatI	WGTACW	1 cut(s)	96
TauI	GCSGC	3 cut(s)	203, 206, 317
TfiI	GAWTC	1 cut(s)	142
Tru1I	TTAA	2 cut(s)	443, 481
Tru9I	TTAA	2 cut(s)	443, 481
TseI	GCWGC	3 cut(s)	18, 295, 362
TspGWI	ACGGA	2 cut(s)	340, 353
XapI	RAATTY	1 cut(s)	168
XceI	RCATGY	1 cut(s)	310
XmiI	GTMKAC	1 cut(s)	357
ZraI	GACGTC	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.