Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010075

Physical Location & Seq

Genomic Coordinates Reverse (-)

17297831 .. 17298829

Gene Structure 999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G47200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGCAGAAACCGCCGAGACAATCAACACCACGATCTCATCGCCGCCACCGGAATCCGAAAGCTCCACCACTATTTCTGCAATGACAGATCCAACATCTCAAGAAGCAGCCTCAAAAGACACAGATCTGACGAAAGAAGCCGAATCAGAGAAGAAACCAGGAGGAATCTCTCTCCGAATCTGGCCACCGACTCAGAAAACTCGCGACGCCGTTCTGAATCGCCTGATCGAGACCTTATCCACCGAATCAATCCTCTCTAAGAGATACGGTACTCTTAAATCTGACGATGCAACCACCGTCGCGAAACTTATCGAAGAAGAGGCTTATGGTGTTGCTTCGAATGCTGTGTCGAGTGATGATGATGGGATTAAGATTCTTGAGCTTTATTCTAAAGAGATTAGTAAGAGGATGCTTGAATCTGTTAAGGCTAGATCTAATGCTAGTGTTGGAAATGGAAGTGTGGAGGATGCTAATACTGATGCTAGTGAGGTTTCTAAAGATGATGCTGGTCCTGCTTCAGAGGAGGAGAAGAGTGAGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005640 GO:0005737 GO:0005794 GO:0005829 GO:0005886 GO:0007049 GO:0007275 GO:0008150 GO:0009791 GO:0009987 GO:0012505 GO:0016020 GO:0016363 GO:0019867 GO:0022622 GO:0031090 GO:0031965 GO:0031967 GO:0031968 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0034399 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0070013 GO:0071944 GO:0090696 GO:0098588 GO:0098805 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WPP

Protein Analysis

180

Amino Acids

19.13

Weight (kDa)

4.44

Isoelectric Point (pI)

50.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WPP	PF13943	57 - 148	1.4e-37	WPP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47200 AT5G27940 AT5G43070
fragaria_vesca	FvH4_2g33670 FvH4_2g33670
malus_domestica	MD08G1091600.v1.1 MD15G1075600.v1.1
prunus_persica	Prupe.1G429000_v2.0.a1
pyrus_communis	pycom08g07390 pycom15g07080
rosa_chinensis	RchiOBHm_Chr6g0308881
rosa_laevigata	RLG00000010608
rosa_multiflora	Rmu_sc0004046.1_g000014
rosa_roxburghii	Rroxscaffold_7G00159820
rosa_rugosa	Rorug06G0368900 Rorug06G0369000
rosa_samantha	Rh6AG480500 Rh6BG490000 Rh6CG495400 Rh6DG480800
rosa_wichuraiana	Rw6G041880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	204, 302
AciI	CCGC	2 cut(s)	12, 44
AclWI	GGATC	1 cut(s)	83
AcoI	YGGCCR	1 cut(s)	182
AcuI	CTGAAG	1 cut(s)	501
AcyI	GRCGYC	1 cut(s)	207
AfaI	GTAC	1 cut(s)	271
AgsI	TTSAA	1 cut(s)	416
AjnI	CCWGG	1 cut(s)	157
AluBI	AGCT	2 cut(s)	63, 382
AluI	AGCT	2 cut(s)	63, 382
Alw26I	GTCTC	2 cut(s)	11, 224
AlwI	GGATC	1 cut(s)	83
AoxI	GGCC	1 cut(s)	182
ApeKI	GCWGC	1 cut(s)	107
ArsI	GACNNNNNNTTYG	2 cut(s)	332, 364
AspS9I	GGNCC	1 cut(s)	509
AsuII	TTCGAA	1 cut(s)	338
AvaII	GGWCC	1 cut(s)	509
BalI	TGGCCA	1 cut(s)	184
BbvI	GCAGC	1 cut(s)	119
BccI	CCATC	1 cut(s)	356
BceAI	ACGGC	1 cut(s)	194
BciT130I	CCWGG	1 cut(s)	159
BcoDI	GTCTC	2 cut(s)	11, 224
BfaI	CTAG	3 cut(s)	429, 441, 483
BglII	AGATCT	2 cut(s)	124, 431
BisI	GCNGC	2 cut(s)	44, 108
BlsI	GCNGC	2 cut(s)	45, 109
Bme1390I	CCNGG	1 cut(s)	159
Bme18I	GGWCC	1 cut(s)	509
BmgT120I	GGNCC	1 cut(s)	509
BmrFI	CCNGG	1 cut(s)	159
BmsI	GCATC	5 cut(s)	277, 399, 457, 469, 493
Bpu14I	TTCGAA	1 cut(s)	338
BpuEI	CTTGAG	2 cut(s)	84, 398
BsaHI	GRCGYC	1 cut(s)	207
BsaI	GGTCTC	1 cut(s)	224
BsaWI	WCCGGW	1 cut(s)	49
Bse3DI	GCAATG	1 cut(s)	87
BseBI	CCWGG	1 cut(s)	159
BseGI	GGATG	2 cut(s)	414, 472
BseMI	GCAATG	1 cut(s)	87
BseMII	CTCAG	1 cut(s)	206
BseRI	GAGGAG	2 cut(s)	536, 539
BseXI	GCAGC	1 cut(s)	119
Bsh1236I	CGCG	2 cut(s)	204, 302
BshFI	GGCC	1 cut(s)	184
BsiSI	CCGG	1 cut(s)	50
BsmAI	GTCTC	2 cut(s)	11, 224
BsmI	GAATGC	1 cut(s)	346
BsnI	GGCC	1 cut(s)	184
Bso31I	GGTCTC	1 cut(s)	224
Bsp119I	TTCGAA	1 cut(s)	338
Bsp143I	GATC	5 cut(s)	33, 88, 124, 225, 431
Bsp68I	TCGCGA	2 cut(s)	204, 302
BspACI	CCGC	2 cut(s)	12, 44
BspANI	GGCC	1 cut(s)	184
BspCNI	CTCAG	1 cut(s)	205
BspFNI	CGCG	2 cut(s)	204, 302
BspPI	GGATC	1 cut(s)	83
BspT104I	TTCGAA	1 cut(s)	338
BspTNI	GGTCTC	1 cut(s)	224
BsrDI	GCAATG	1 cut(s)	87
BssMI	GATC	5 cut(s)	33, 88, 124, 225, 431
BssNI	GRCGYC	1 cut(s)	207
Bst2UI	CCWGG	1 cut(s)	159
Bst4CI	ACNGT	2 cut(s)	269, 298
Bst6I	CTCTTC	2 cut(s)	312, 524
BstACI	GRCGYC	1 cut(s)	207
BstBI	TTCGAA	1 cut(s)	338
BstDEI	CTNAG	2 cut(s)	192, 258
BstF5I	GGATG	2 cut(s)	414, 472
BstFNI	CGCG	2 cut(s)	204, 302
BstKTI	GATC	5 cut(s)	36, 91, 127, 228, 434
BstMAI	GTCTC	2 cut(s)	11, 224
BstMBI	GATC	5 cut(s)	33, 88, 124, 225, 431
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 341, 512
BstNI	CCWGG	1 cut(s)	159
BstSCI	CCNGG	1 cut(s)	157
BstUI	CGCG	2 cut(s)	204, 302
BstV1I	GCAGC	1 cut(s)	119
BstX2I	RGATCY	3 cut(s)	88, 124, 431
BstYI	RGATCY	3 cut(s)	88, 124, 431
BsuRI	GGCC	1 cut(s)	184
BtgZI	GCGATG	1 cut(s)	24
BtsCI	GGATG	2 cut(s)	414, 472
BtuMI	TCGCGA	2 cut(s)	204, 302
Cfr13I	GGNCC	1 cut(s)	509
CseI	GACGC	1 cut(s)	215
Csp6I	GTAC	1 cut(s)	270
CviJI	RGCY	8 cut(s)	63, 110, 140, 184, 323, 382, 428, 539
CviKI_1	RGCY	8 cut(s)	63, 110, 140, 184, 323, 382, 428, 539
CviQI	GTAC	1 cut(s)	270
DdeI	CTNAG	2 cut(s)	192, 258
DpnI	GATC	5 cut(s)	35, 90, 126, 227, 433
DpnII	GATC	5 cut(s)	33, 88, 124, 225, 431
EaeI	YGGCCR	1 cut(s)	182
Eam1104I	CTCTTC	2 cut(s)	312, 524
EarI	CTCTTC	2 cut(s)	312, 524
Eco31I	GGTCTC	1 cut(s)	224
Eco47I	GGWCC	1 cut(s)	509
Eco57I	CTGAAG	1 cut(s)	501
EcoRII	CCWGG	1 cut(s)	157
FaiI	YATR	1 cut(s)	327
Fnu4HI	GCNGC	2 cut(s)	44, 108
FokI	GGATG	2 cut(s)	421, 479
Fsp4HI	GCNGC	2 cut(s)	44, 108
FspBI	CTAG	3 cut(s)	429, 441, 483
GluI	GCNGC	2 cut(s)	44, 108
HaeIII	GGCC	1 cut(s)	184
HapII	CCGG	1 cut(s)	50
HgaI	GACGC	1 cut(s)	215
Hin1I	GRCGYC	1 cut(s)	207
HinfI	GANTC	9 cut(s)	53, 143, 165, 177, 190, 217, 245, 373, 416
HpaII	CCGG	1 cut(s)	50
Hpy188I	TCNGA	8 cut(s)	58, 129, 148, 176, 195, 216, 283, 520
Hpy188III	TCNNGA	5 cut(s)	101, 203, 229, 301, 377
Hpy99I	CGWCG	2 cut(s)	209, 302
HpyCH4III	ACNGT	2 cut(s)	269, 298
HpyCH4V	TGCA	2 cut(s)	80, 290
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 341, 512
HpyF3I	CTNAG	2 cut(s)	192, 258
Hsp92I	GRCGYC	1 cut(s)	207
Kzo9I	GATC	5 cut(s)	33, 88, 124, 225, 431
LmnI	GCTCC	1 cut(s)	68
LpnPI	CCDG	7 cut(s)	63, 144, 166, 171, 236, 492, 525
Lsp1109I	GCAGC	1 cut(s)	119
LweI	GCATC	5 cut(s)	277, 399, 457, 469, 493
MaeI	CTAG	3 cut(s)	429, 441, 483
MalI	GATC	5 cut(s)	35, 90, 126, 227, 433
MboI	GATC	5 cut(s)	33, 88, 124, 225, 431
MboII	GAAGA	4 cut(s)	163, 326, 329, 541
MflI	RGATCY	3 cut(s)	88, 124, 431
MlsI	TGGCCA	1 cut(s)	184
MluNI	TGGCCA	1 cut(s)	184
MlyI	GAGTC	1 cut(s)	184
MmeI	TCCRAC	2 cut(s)	116, 427
Mox20I	TGGCCA	1 cut(s)	184
MscI	TGGCCA	1 cut(s)	184
MseI	TTAA	3 cut(s)	276, 369, 423
Msp20I	TGGCCA	1 cut(s)	184
MspI	CCGG	1 cut(s)	50
MspR9I	CCNGG	1 cut(s)	159
Mva1269I	GAATGC	1 cut(s)	346
MvaI	CCWGG	1 cut(s)	159
MvnI	CGCG	2 cut(s)	204, 302
MwoI	GCNNNNNNNGC	3 cut(s)	11, 341, 512
NdeII	GATC	5 cut(s)	33, 88, 124, 225, 431
NmeAIII	GCCGAG	1 cut(s)	40
NruI	TCGCGA	2 cut(s)	204, 302
NspV	TTCGAA	1 cut(s)	338
PctI	GAATGC	1 cut(s)	346
PfeI	GAWTC	8 cut(s)	53, 143, 165, 177, 217, 245, 373, 416
PkrI	GCNGC	2 cut(s)	45, 109
PleI	GAGTC	1 cut(s)	184
PpsI	GAGTC	1 cut(s)	184
Psp6I	CCWGG	1 cut(s)	157
PspGI	CCWGG	1 cut(s)	157
PspPI	GGNCC	1 cut(s)	509
PsuI	RGATCY	3 cut(s)	88, 124, 431
RruI	TCGCGA	2 cut(s)	204, 302
RsaI	GTAC	1 cut(s)	271
RsaNI	GTAC	1 cut(s)	270
SaqAI	TTAA	3 cut(s)	276, 369, 423
SatI	GCNGC	2 cut(s)	44, 108
Sau3AI	GATC	5 cut(s)	33, 88, 124, 225, 431
Sau96I	GGNCC	1 cut(s)	509
SchI	GAGTC	1 cut(s)	184
ScrFI	CCNGG	1 cut(s)	159
SetI	ASST	4 cut(s)	65, 236, 384, 492
SfaNI	GCATC	5 cut(s)	277, 399, 457, 469, 493
SfuI	TTCGAA	1 cut(s)	338
SinI	GGWCC	1 cut(s)	509
SmlI	CTYRAG	2 cut(s)	99, 377
SmoI	CTYRAG	2 cut(s)	99, 377
SsiI	CCGC	2 cut(s)	12, 44
SspMI	CTAG	3 cut(s)	429, 441, 483
StyD4I	CCNGG	1 cut(s)	157
TaaI	ACNGT	2 cut(s)	269, 298
TaqI	TCGA	4 cut(s)	228, 312, 338, 350
TauI	GCSGC	1 cut(s)	46
TfiI	GAWTC	8 cut(s)	53, 143, 165, 177, 217, 245, 373, 416
Tru1I	TTAA	3 cut(s)	276, 369, 423
Tru9I	TTAA	3 cut(s)	276, 369, 423
TseI	GCWGC	1 cut(s)	107
VpaK11BI	GGWCC	1 cut(s)	509
XspI	CTAG	3 cut(s)	429, 441, 483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.