Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0010075

Physical Location & Seq

Genomic Coordinates Forward (+)

5972615 .. 5973091

Gene Structure 477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g07390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGTCGGACTCCGAGAGCACCGCCGCAGCAGCGCCTCAAGACCAAATCTCCCAACAGCATCGCCACCACGACGCACCAGCTCACAAAGGGAAGCCCAGCCTCCTTACCTCCTTCAGCATATGGCCGCCGACCCAGCGCACCCGCGACGCCGTCGTCAACCGCCTCATCGAGACCCTCACTTCGCCCTCCCCTCTCTCCAAGCGCTACGGCACCATGGCCGCCAACGAGGCCTCCACCACCGCCCGCCTCATCGAGGACAACGCCTTCGCTGCCGCCGGTGGCTCCGCCGCGACCGAGGAAGACGGGATTCAGATCCTGCAGGTTTACTCCAAGGAGATCAGCAAGCGCATGCTCGACACCGTCAAGTCCAGGATCGCCGCTGCTGAAAACGGTGCGGCGGAGTCCGTGACTGCGAGCTCTGTGGTGGACTCCACTGCTGCCGCCGCCGGTGAGGATGCTAAGGCGGAAGAGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005640 GO:0005737 GO:0005794 GO:0005829 GO:0005886 GO:0007049 GO:0007275 GO:0008150 GO:0009791 GO:0009987 GO:0012505 GO:0016020 GO:0016363 GO:0019867 GO:0022622 GO:0031090 GO:0031965 GO:0031967 GO:0031968 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0034399 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0070013 GO:0071944 GO:0090696 GO:0098588 GO:0098805 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WPP

Protein Analysis

159

Amino Acids

16.63

Weight (kDa)

5.17

Isoelectric Point (pI)

56.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WPP	PF13943	37 - 129	1.5e-37	WPP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0010075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47200 AT5G27940 AT5G43070
fragaria_vesca	FvH4_2g33670 FvH4_2g33670
malus_domestica	MD08G1091600.v1.1 MD15G1075600.v1.1
prunus_persica	Prupe.1G429000_v2.0.a1
pyrus_communis	pycom08g07390 pycom15g07080
rosa_chinensis	RchiOBHm_Chr6g0308881
rosa_laevigata	RLG00000010608
rosa_multiflora	Rmu_sc0004046.1_g000014
rosa_roxburghii	Rroxscaffold_7G00159820
rosa_rugosa	Rorug06G0368900 Rorug06G0369000
rosa_samantha	Rh6AG480500 Rh6BG490000 Rh6CG495400 Rh6DG480800
rosa_wichuraiana	Rw6G041880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	152
Acc36I	ACCTGC	1 cut(s)	310
AccB1I	GGYRCC	1 cut(s)	209
AccII	CGCG	2 cut(s)	144, 290
AclWI	GGATC	2 cut(s)	307, 380
AcoI	YGGCCR	2 cut(s)	122, 216
AcuI	CTGAAG	1 cut(s)	97
AcyI	GRCGYC	1 cut(s)	147
AfaI	GTAC	1 cut(s)	473
AfeI	AGCGCT	1 cut(s)	203
AfiI	CCNNNNNNNGG	1 cut(s)	253
AjnI	CCWGG	1 cut(s)	368
AluBI	AGCT	2 cut(s)	80, 417
AluI	AGCT	2 cut(s)	80, 417
Alw21I	GWGCWC	2 cut(s)	20, 419
Alw26I	GTCTC	1 cut(s)	164
AlwI	GGATC	2 cut(s)	307, 380
AlwNI	CAGNNNCTG	1 cut(s)	316
Aor51HI	AGCGCT	1 cut(s)	203
AoxI	GGCC	3 cut(s)	122, 216, 228
ApeKI	GCWGC	5 cut(s)	26, 29, 269, 380, 437
ArsI	GACNNNNNNTTYG	4 cut(s)	163, 195, 248, 280
AspLEI	GCGC	4 cut(s)	34, 138, 204, 348
AsuHPI	GGTGA	1 cut(s)	461
BanI	GGYRCC	1 cut(s)	209
BanII	GRGCYC	1 cut(s)	419
BbsI	GAAGAC	1 cut(s)	306
Bbv12I	GWGCWC	2 cut(s)	20, 419
BbvI	GCAGC	5 cut(s)	38, 41, 256, 367, 424
BceAI	ACGGC	2 cut(s)	134, 223
BciT130I	CCWGG	1 cut(s)	370
BcoDI	GTCTC	1 cut(s)	164
BfmI	CTRYAG	1 cut(s)	317
BfoI	RGCGCY	2 cut(s)	35, 205
BfuAI	ACCTGC	1 cut(s)	310
BglI	GCCNNNNNGGC	1 cut(s)	227
BmcAI	AGTACT	1 cut(s)	473
Bme1390I	CCNGG	1 cut(s)	370
BmiI	GGNNCC	2 cut(s)	211, 283
BmrFI	CCNGG	1 cut(s)	370
BmsI	GCATC	2 cut(s)	67, 445
BpiI	GAAGAC	1 cut(s)	306
Bpu10I	CCTNAGC	1 cut(s)	459
BpuEI	CTTGAG	1 cut(s)	21
BsaBI	GATNNNNATC	1 cut(s)	311
BsaHI	GRCGYC	1 cut(s)	147
BsaI	GGTCTC	1 cut(s)	164
BsaJI	CCNNGG	3 cut(s)	213, 294, 330
BsaXI	ACNNNNNCTCC	4 cut(s)	32, 62, 215, 245
Bsc4I	CCNNNNNNNGG	1 cut(s)	253
Bse118I	RCCGGY	2 cut(s)	275, 446
Bse8I	GATNNNNATC	1 cut(s)	311
BseBI	CCWGG	1 cut(s)	370
BseDI	CCNNGG	3 cut(s)	213, 294, 330
BseGI	GGATG	1 cut(s)	460
BseJI	GATNNNNATC	1 cut(s)	311
BseLI	CCNNNNNNNGG	1 cut(s)	253
BseXI	GCAGC	5 cut(s)	38, 41, 256, 367, 424
BseYI	CCCAGC	2 cut(s)	95, 132
Bsh1236I	CGCG	2 cut(s)	144, 290
Bsh1285I	CGRYCG	1 cut(s)	294
BshFI	GGCC	3 cut(s)	124, 218, 230
BshNI	GGYRCC	1 cut(s)	209
BsiEI	CGRYCG	1 cut(s)	294
BsiHKAI	GWGCWC	2 cut(s)	20, 419
BsiSI	CCGG	2 cut(s)	276, 447
BslI	CCNNNNNNNGG	1 cut(s)	253
BsmAI	GTCTC	1 cut(s)	164
BsnI	GGCC	3 cut(s)	124, 218, 230
Bso31I	GGTCTC	1 cut(s)	164
Bsp1286I	GDGCHC	2 cut(s)	20, 419
Bsp143I	GATC	3 cut(s)	312, 336, 372
Bsp19I	CCATGG	1 cut(s)	213
BspANI	GGCC	3 cut(s)	124, 218, 230
BspFNI	CGCG	2 cut(s)	144, 290
BspLI	GGNNCC	2 cut(s)	211, 283
BspMAI	CTGCAG	1 cut(s)	321
BspMI	ACCTGC	1 cut(s)	310
BspPI	GGATC	2 cut(s)	307, 380
BspT107I	GGYRCC	1 cut(s)	209
BspTNI	GGTCTC	1 cut(s)	164
BsrFI	RCCGGY	2 cut(s)	275, 446
BssAI	RCCGGY	2 cut(s)	275, 446
BssECI	CCNNGG	3 cut(s)	213, 294, 330
BssMI	GATC	3 cut(s)	312, 336, 372
BssNI	GRCGYC	1 cut(s)	147
BssT1I	CCWWGG	2 cut(s)	213, 330
Bst2UI	CCWGG	1 cut(s)	370
Bst4CI	ACNGT	2 cut(s)	361, 392
Bst6I	CTCTTC	1 cut(s)	462
BstACI	GRCGYC	1 cut(s)	147
BstC8I	GCNNGC	4 cut(s)	244, 344, 350, 415
BstDEI	CTNAG	1 cut(s)	459
BstDSI	CCRYGG	1 cut(s)	213
BstENI	CCTNNNNNAGG	1 cut(s)	251
BstF5I	GGATG	1 cut(s)	460
BstFNI	CGCG	2 cut(s)	144, 290
BstH2I	RGCGCY	2 cut(s)	35, 205
BstHHI	GCGC	4 cut(s)	34, 138, 204, 348
BstKTI	GATC	3 cut(s)	315, 339, 375
BstMAI	GTCTC	1 cut(s)	164
BstMBI	GATC	3 cut(s)	312, 336, 372
BstMCI	CGRYCG	1 cut(s)	294
BstMWI	GCNNNNNNNGC	5 cut(s)	29, 133, 227, 269, 443
BstNI	CCWGG	1 cut(s)	370
BstNSI	RCATGY	1 cut(s)	352
BstSCI	CCNGG	1 cut(s)	368
BstSFI	CTRYAG	1 cut(s)	317
BstUI	CGCG	2 cut(s)	144, 290
BstV1I	GCAGC	5 cut(s)	38, 41, 256, 367, 424
BstV2I	GAAGAC	1 cut(s)	306
BstX2I	RGATCY	1 cut(s)	312
BstYI	RGATCY	1 cut(s)	312
BsuRI	GGCC	3 cut(s)	124, 218, 230
BtgI	CCRYGG	1 cut(s)	213
BtgZI	GCGATG	1 cut(s)	44
BtsCI	GGATG	1 cut(s)	460
BtsI	GCAGTG	1 cut(s)	432
BtsIMutI	CAGTG	1 cut(s)	432
BveI	ACCTGC	1 cut(s)	310
Cac8I	GCNNGC	4 cut(s)	244, 344, 350, 415
CaiI	CAGNNNCTG	1 cut(s)	316
CfoI	GCGC	4 cut(s)	34, 138, 204, 348
Cfr10I	RCCGGY	2 cut(s)	275, 446
CseI	GACGC	2 cut(s)	80, 155
Csp6I	GTAC	1 cut(s)	472
CviAII	CATG	2 cut(s)	214, 349
CviJI	RGCY	8 cut(s)	80, 94, 99, 124, 218, 230, 282, 417
CviKI_1	RGCY	8 cut(s)	80, 94, 99, 124, 218, 230, 282, 417
CviQI	GTAC	1 cut(s)	472
DdeI	CTNAG	1 cut(s)	459
DpnI	GATC	3 cut(s)	314, 338, 374
DpnII	GATC	3 cut(s)	312, 336, 372
DrdI	GACNNNNNNGTC	1 cut(s)	152
DseDI	GACNNNNNNGTC	1 cut(s)	152
EaeI	YGGCCR	2 cut(s)	122, 216
Eam1104I	CTCTTC	1 cut(s)	462
EarI	CTCTTC	1 cut(s)	462
EciI	GGCGGA	2 cut(s)	274, 413
Ecl136II	GAGCTC	1 cut(s)	417
Eco130I	CCWWGG	2 cut(s)	213, 330
Eco147I	AGGCCT	1 cut(s)	230
Eco24I	GRGCYC	1 cut(s)	419
Eco31I	GGTCTC	1 cut(s)	164
Eco47III	AGCGCT	1 cut(s)	203
Eco53kI	GAGCTC	1 cut(s)	417
Eco57I	CTGAAG	1 cut(s)	97
EcoICRI	GAGCTC	1 cut(s)	417
EcoNI	CCTNNNNNAGG	1 cut(s)	251
EcoRII	CCWGG	1 cut(s)	368
EcoT14I	CCWWGG	2 cut(s)	213, 330
EcoT38I	GRGCYC	1 cut(s)	419
ErhI	CCWWGG	2 cut(s)	213, 330
FaeI	CATG	2 cut(s)	217, 352
FaiI	YATR	4 cut(s)	119, 121, 215, 350
FatI	CATG	2 cut(s)	213, 348
FauI	CCCGC	2 cut(s)	149, 251
FauNDI	CATATG	1 cut(s)	119
FokI	GGATG	1 cut(s)	467
FriOI	GRGCYC	1 cut(s)	419
GlaI	GCGC	4 cut(s)	33, 137, 203, 347
GsaI	CCCAGC	2 cut(s)	99, 136
HaeII	RGCGCY	2 cut(s)	35, 205
HaeIII	GGCC	3 cut(s)	124, 218, 230
HapII	CCGG	2 cut(s)	276, 447
HgaI	GACGC	2 cut(s)	80, 155
HhaI	GCGC	4 cut(s)	34, 138, 204, 348
Hin1I	GRCGYC	1 cut(s)	147
Hin1II	CATG	2 cut(s)	217, 352
Hin6I	GCGC	4 cut(s)	32, 136, 202, 346
HinP1I	GCGC	4 cut(s)	32, 136, 202, 346
HincII	GTYRAC	1 cut(s)	157
HindII	GTYRAC	1 cut(s)	157
HinfI	GANTC	4 cut(s)	8, 307, 401, 428
HpaII	CCGG	2 cut(s)	276, 447
HphI	GGTGA	1 cut(s)	461
Hpy166II	GTNNAC	3 cut(s)	157, 325, 427
Hpy188I	TCNGA	3 cut(s)	7, 13, 312
Hpy188III	TCNNGA	2 cut(s)	38, 169
Hpy8I	GTNNAC	3 cut(s)	157, 325, 427
Hpy99I	CGWCG	3 cut(s)	74, 149, 155
HpyAV	CCTTC	2 cut(s)	121, 274
HpyCH4III	ACNGT	2 cut(s)	361, 392
HpyCH4V	TGCA	1 cut(s)	319
HpyF10VI	GCNNNNNNNGC	5 cut(s)	29, 133, 227, 269, 443
HpyF3I	CTNAG	1 cut(s)	459
Hsp92I	GRCGYC	1 cut(s)	147
Hsp92II	CATG	2 cut(s)	217, 352
HspAI	GCGC	4 cut(s)	32, 136, 202, 346
Kzo9I	GATC	3 cut(s)	312, 336, 372
LmnI	GCTCC	1 cut(s)	287
LpnPI	CCDG	9 cut(s)	90, 109, 146, 289, 305, 329, 355, 382, 460
Lsp1109I	GCAGC	5 cut(s)	38, 41, 256, 367, 424
LweI	GCATC	2 cut(s)	67, 445
MaeIII	GTNAC	1 cut(s)	406
MalI	GATC	3 cut(s)	314, 338, 374
MboI	GATC	3 cut(s)	312, 336, 372
MboII	GAAGA	1 cut(s)	311
MflI	RGATCY	1 cut(s)	312
MhlI	GDGCHC	2 cut(s)	20, 419
MlyI	GAGTC	3 cut(s)	2, 410, 422
MspA1I	CMGCKG	1 cut(s)	380
MspI	CCGG	2 cut(s)	276, 447
MspR9I	CCNGG	1 cut(s)	370
MvaI	CCWGG	1 cut(s)	370
MvnI	CGCG	2 cut(s)	144, 290
MwoI	GCNNNNNNNGC	5 cut(s)	29, 133, 227, 269, 443
NcoI	CCATGG	1 cut(s)	213
NdeI	CATATG	1 cut(s)	119
NdeII	GATC	3 cut(s)	312, 336, 372
NlaIII	CATG	2 cut(s)	217, 352
NlaIV	GGNNCC	2 cut(s)	211, 283
NmuCI	GTSAC	1 cut(s)	406
NspI	RCATGY	1 cut(s)	352
PaeI	GCATGC	1 cut(s)	352
PceI	AGGCCT	1 cut(s)	230
PfeI	GAWTC	1 cut(s)	307
PflFI	GACNNNGTC	2 cut(s)	149, 359
PfoI	TCCNGGA	1 cut(s)	368
PleI	GAGTC	3 cut(s)	2, 409, 422
PpsI	GAGTC	3 cut(s)	2, 409, 422
Psp124BI	GAGCTC	1 cut(s)	419
Psp6I	CCWGG	1 cut(s)	368
PspFI	CCCAGC	2 cut(s)	95, 132
PspGI	CCWGG	1 cut(s)	368
PspN4I	GGNNCC	2 cut(s)	211, 283
PstI	CTGCAG	1 cut(s)	321
PstNI	CAGNNNCTG	1 cut(s)	316
PsuI	RGATCY	1 cut(s)	312
PsyI	GACNNNGTC	2 cut(s)	149, 359
RsaI	GTAC	1 cut(s)	473
RsaNI	GTAC	1 cut(s)	472
SacI	GAGCTC	1 cut(s)	419
Sau3AI	GATC	3 cut(s)	312, 336, 372
SbfI	CCTGCAGG	1 cut(s)	321
ScaI	AGTACT	1 cut(s)	473
SchI	GAGTC	3 cut(s)	2, 410, 422
ScrFI	CCNGG	1 cut(s)	370
SdaI	CCTGCAGG	1 cut(s)	321
SduI	GDGCHC	2 cut(s)	20, 419
SetI	ASST	4 cut(s)	82, 110, 324, 419
SfaNI	GCATC	2 cut(s)	67, 445
SfcI	CTRYAG	1 cut(s)	317
SgrAI	CRCCGGYG	2 cut(s)	275, 446
SmlI	CTYRAG	1 cut(s)	36
SmoI	CTYRAG	1 cut(s)	36
SphI	GCATGC	1 cut(s)	352
Sse8387I	CCTGCAGG	1 cut(s)	321
SseBI	AGGCCT	1 cut(s)	230
SstI	GAGCTC	1 cut(s)	419
StuI	AGGCCT	1 cut(s)	230
StyD4I	CCNGG	1 cut(s)	368
StyI	CCWWGG	2 cut(s)	213, 330
TaaI	ACNGT	2 cut(s)	361, 392
TaqI	TCGA	3 cut(s)	168, 252, 354
TaqII	GACCGA	1 cut(s)	308
TatI	WGTACW	1 cut(s)	471
TauI	GCSGC	9 cut(s)	26, 127, 221, 275, 290, 380, 398, 443, 446
TfiI	GAWTC	1 cut(s)	307
TscAI	CASTG	1 cut(s)	439
TseFI	GTSAC	1 cut(s)	406
TseI	GCWGC	5 cut(s)	26, 29, 269, 380, 437
Tsp45I	GTSAC	1 cut(s)	406
TspGWI	ACGGA	1 cut(s)	394
TspRI	CASTG	1 cut(s)	439
Tth111I	GACNNNGTC	2 cut(s)	149, 359
XagI	CCTNNNNNAGG	1 cut(s)	251
XceI	RCATGY	1 cut(s)	352
ZrmI	AGTACT	1 cut(s)	473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.