Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0010075

Physical Location & Seq

Genomic Coordinates Forward (+)

5154386 .. 5154889

Gene Structure 504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1075600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGTCGGATTCCGAGAGCGCCGCCGTAGCACCACCGCAAGACCAAACCTCCGCCATGGAGCCCGAATCCCAACAGCAGCACCACCACGACGCACCAGCTCACAAAGAGAAGCCCAGCGTCCTCACCTCCTTCAGCATATGGCCGCCGACCCAGCGCACGCGCGACGCCGTCGTCAACCGCCTCATCGAGACCCTCACCACGCCCTCCCCTCTCTCCAAGCGCTACGGCACCATGGCTGCCGACGAGGCTTCCGCCACCGCCCGCCTCATCGAGGAGGACGCCTTCGCCGCCGCCGGTGGCTCCGCCGCGACCGAGGAGGACGGGATTCAGATCCTGCAGGTTTACTCCAAGGAGATCAGCAAGCGCATGCTCGACACCGTCAAGTCCAAGAACGCCGCTGCTTCCGCTGCTCAAAACGGCGCCTCGGAGTCCGAGGCTGCGAGCTCTGACGTGGACCCCACCGCTGCTGCCGCCAGTGAGGATGCTAAGGGCGAAGAGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005640 GO:0005737 GO:0005794 GO:0005829 GO:0005886 GO:0007049 GO:0007275 GO:0008150 GO:0009791 GO:0009987 GO:0012505 GO:0016020 GO:0016363 GO:0019867 GO:0022622 GO:0031090 GO:0031965 GO:0031967 GO:0031968 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0034399 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0070013 GO:0071944 GO:0090696 GO:0098588 GO:0098805 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WPP

Protein Analysis

168

Amino Acids

17.57

Weight (kDa)

4.6

Isoelectric Point (pI)

59.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WPP	PF13943	43 - 136	5.9e-38	WPP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0010075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47200 AT5G27940 AT5G43070
fragaria_vesca	FvH4_2g33670 FvH4_2g33670
malus_domestica	MD08G1091600.v1.1 MD15G1075600.v1.1
prunus_persica	Prupe.1G429000_v2.0.a1
pyrus_communis	pycom08g07390 pycom15g07080
rosa_chinensis	RchiOBHm_Chr6g0308881
rosa_laevigata	RLG00000010608
rosa_multiflora	Rmu_sc0004046.1_g000014
rosa_roxburghii	Rroxscaffold_7G00159820
rosa_rugosa	Rorug06G0368900 Rorug06G0369000
rosa_samantha	Rh6AG480500 Rh6BG490000 Rh6CG495400 Rh6DG480800
rosa_wichuraiana	Rw6G041880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	170
Acc36I	ACCTGC	1 cut(s)	328
AccB1I	GGYRCC	2 cut(s)	227, 419
AccII	CGCG	3 cut(s)	160, 162, 308
AclWI	GGATC	1 cut(s)	325
AcoI	YGGCCR	1 cut(s)	140
AcuI	CTGAAG	1 cut(s)	115
AcyI	GRCGYC	3 cut(s)	165, 279, 420
AfaI	GTAC	1 cut(s)	500
AfeI	AGCGCT	1 cut(s)	221
AfiI	CCNNNNNNNGG	1 cut(s)	271
AjiI	CACGTC	1 cut(s)	451
AluBI	AGCT	2 cut(s)	98, 444
AluI	AGCT	2 cut(s)	98, 444
Alw21I	GWGCWC	1 cut(s)	446
Alw26I	GTCTC	1 cut(s)	182
AlwI	GGATC	1 cut(s)	325
AlwNI	CAGNNNCTG	1 cut(s)	334
Aor51HI	AGCGCT	1 cut(s)	221
AoxI	GGCC	1 cut(s)	140
ApeKI	GCWGC	7 cut(s)	76, 236, 398, 407, 437, 464, 467
AspLEI	GCGC	6 cut(s)	20, 156, 162, 222, 366, 422
AspS9I	GGNCC	1 cut(s)	454
AsuHPI	GGTGA	2 cut(s)	115, 187
AvaII	GGWCC	1 cut(s)	454
BanI	GGYRCC	2 cut(s)	227, 419
BanII	GRGCYC	2 cut(s)	63, 446
Bbv12I	GWGCWC	1 cut(s)	446
BbvI	GCAGC	7 cut(s)	88, 223, 385, 394, 424, 451, 454
BceAI	ACGGC	4 cut(s)	8, 152, 241, 433
BcoDI	GTCTC	1 cut(s)	182
BfmI	CTRYAG	1 cut(s)	335
BfoI	RGCGCY	3 cut(s)	21, 223, 423
BfuAI	ACCTGC	1 cut(s)	328
BglI	GCCNNNNNGGC	1 cut(s)	245
BmcAI	AGTACT	1 cut(s)	500
Bme18I	GGWCC	1 cut(s)	454
BmgBI	CACGTC	1 cut(s)	451
BmgT120I	GGNCC	1 cut(s)	454
BmiI	GGNNCC	5 cut(s)	60, 229, 301, 421, 456
BmsI	GCATC	1 cut(s)	472
Bpu10I	CCTNAGC	1 cut(s)	486
BsaBI	GATNNNNATC	1 cut(s)	329
BsaHI	GRCGYC	3 cut(s)	165, 279, 420
BsaI	GGTCTC	1 cut(s)	182
BsaJI	CCNNGG	6 cut(s)	54, 231, 312, 348, 423, 432
BsaXI	ACNNNNNCTCC	2 cut(s)	32, 62
Bsc4I	CCNNNNNNNGG	1 cut(s)	271
Bse118I	RCCGGY	1 cut(s)	293
Bse1I	ACTGG	1 cut(s)	474
Bse8I	GATNNNNATC	1 cut(s)	329
BseDI	CCNNGG	6 cut(s)	54, 231, 312, 348, 423, 432
BseGI	GGATG	1 cut(s)	487
BseJI	GATNNNNATC	1 cut(s)	329
BseLI	CCNNNNNNNGG	1 cut(s)	271
BseNI	ACTGG	1 cut(s)	474
BseRI	GAGGAG	2 cut(s)	287, 329
BseXI	GCAGC	7 cut(s)	88, 223, 385, 394, 424, 451, 454
BseYI	CCCAGC	2 cut(s)	113, 150
Bsh1236I	CGCG	3 cut(s)	160, 162, 308
Bsh1285I	CGRYCG	1 cut(s)	312
BshFI	GGCC	1 cut(s)	142
BshNI	GGYRCC	2 cut(s)	227, 419
BsiEI	CGRYCG	1 cut(s)	312
BsiHKAI	GWGCWC	1 cut(s)	446
BsiSI	CCGG	1 cut(s)	294
BslI	CCNNNNNNNGG	1 cut(s)	271
BsmAI	GTCTC	1 cut(s)	182
BsnI	GGCC	1 cut(s)	142
Bso31I	GGTCTC	1 cut(s)	182
Bsp1286I	GDGCHC	2 cut(s)	63, 446
Bsp143I	GATC	2 cut(s)	330, 354
Bsp19I	CCATGG	2 cut(s)	54, 231
BspANI	GGCC	1 cut(s)	142
BspFNI	CGCG	3 cut(s)	160, 162, 308
BspLI	GGNNCC	5 cut(s)	60, 229, 301, 421, 456
BspMAI	CTGCAG	1 cut(s)	339
BspMI	ACCTGC	1 cut(s)	328
BspPI	GGATC	1 cut(s)	325
BspT107I	GGYRCC	2 cut(s)	227, 419
BspTNI	GGTCTC	1 cut(s)	182
BsrFI	RCCGGY	1 cut(s)	293
BsrI	ACTGG	1 cut(s)	474
BssAI	RCCGGY	1 cut(s)	293
BssECI	CCNNGG	6 cut(s)	54, 231, 312, 348, 423, 432
BssMI	GATC	2 cut(s)	330, 354
BssNI	GRCGYC	3 cut(s)	165, 279, 420
BssT1I	CCWWGG	3 cut(s)	54, 231, 348
Bst4CI	ACNGT	1 cut(s)	379
Bst6I	CTCTTC	1 cut(s)	489
BstACI	GRCGYC	3 cut(s)	165, 279, 420
BstC8I	GCNNGC	5 cut(s)	158, 262, 362, 368, 442
BstDEI	CTNAG	1 cut(s)	486
BstDSI	CCRYGG	2 cut(s)	54, 231
BstENI	CCTNNNNNAGG	1 cut(s)	269
BstF5I	GGATG	1 cut(s)	487
BstFNI	CGCG	3 cut(s)	160, 162, 308
BstH2I	RGCGCY	3 cut(s)	21, 223, 423
BstHHI	GCGC	6 cut(s)	20, 156, 162, 222, 366, 422
BstKTI	GATC	2 cut(s)	333, 357
BstMAI	GTCTC	1 cut(s)	182
BstMBI	GATC	2 cut(s)	330, 354
BstMCI	CGRYCG	1 cut(s)	312
BstMWI	GCNNNNNNNGC	7 cut(s)	26, 151, 245, 287, 404, 407, 470
BstNSI	RCATGY	1 cut(s)	370
BstSFI	CTRYAG	1 cut(s)	335
BstUI	CGCG	3 cut(s)	160, 162, 308
BstV1I	GCAGC	7 cut(s)	88, 223, 385, 394, 424, 451, 454
BstX2I	RGATCY	1 cut(s)	330
BstYI	RGATCY	1 cut(s)	330
BsuRI	GGCC	1 cut(s)	142
BtgI	CCRYGG	2 cut(s)	54, 231
BtrI	CACGTC	1 cut(s)	451
BtsCI	GGATG	1 cut(s)	487
BtsIMutI	CAGTG	1 cut(s)	481
BveI	ACCTGC	1 cut(s)	328
Cac8I	GCNNGC	5 cut(s)	158, 262, 362, 368, 442
CaiI	CAGNNNCTG	1 cut(s)	334
CfoI	GCGC	6 cut(s)	20, 156, 162, 222, 366, 422
Cfr10I	RCCGGY	1 cut(s)	293
Cfr13I	GGNCC	1 cut(s)	454
CseI	GACGC	4 cut(s)	98, 106, 173, 287
Csp6I	GTAC	1 cut(s)	499
CviAII	CATG	3 cut(s)	55, 232, 367
CviJI	RGCY	9 cut(s)	61, 98, 112, 142, 236, 248, 300, 437, 444
CviKI_1	RGCY	9 cut(s)	61, 98, 112, 142, 236, 248, 300, 437, 444
CviQI	GTAC	1 cut(s)	499
DdeI	CTNAG	1 cut(s)	486
DinI	GGCGCC	1 cut(s)	421
DpnI	GATC	2 cut(s)	332, 356
DpnII	GATC	2 cut(s)	330, 354
DrdI	GACNNNNNNGTC	1 cut(s)	170
DseDI	GACNNNNNNGTC	1 cut(s)	170
EaeI	YGGCCR	1 cut(s)	140
Eam1104I	CTCTTC	1 cut(s)	489
EarI	CTCTTC	1 cut(s)	489
EciI	GGCGGA	3 cut(s)	40, 241, 292
Ecl136II	GAGCTC	1 cut(s)	444
Eco130I	CCWWGG	3 cut(s)	54, 231, 348
Eco24I	GRGCYC	2 cut(s)	63, 446
Eco31I	GGTCTC	1 cut(s)	182
Eco47I	GGWCC	1 cut(s)	454
Eco47III	AGCGCT	1 cut(s)	221
Eco53kI	GAGCTC	1 cut(s)	444
Eco57I	CTGAAG	1 cut(s)	115
EcoICRI	GAGCTC	1 cut(s)	444
EcoNI	CCTNNNNNAGG	1 cut(s)	269
EcoT14I	CCWWGG	3 cut(s)	54, 231, 348
EcoT38I	GRGCYC	2 cut(s)	63, 446
EgeI	GGCGCC	1 cut(s)	421
EheI	GGCGCC	1 cut(s)	421
ErhI	CCWWGG	3 cut(s)	54, 231, 348
FaeI	CATG	3 cut(s)	58, 235, 370
FaiI	YATR	5 cut(s)	56, 137, 139, 233, 368
FatI	CATG	3 cut(s)	54, 231, 366
FauI	CCCGC	1 cut(s)	269
FauNDI	CATATG	1 cut(s)	137
FokI	GGATG	1 cut(s)	494
FriOI	GRGCYC	2 cut(s)	63, 446
GlaI	GCGC	6 cut(s)	19, 155, 161, 221, 365, 421
GsaI	CCCAGC	2 cut(s)	117, 154
HaeII	RGCGCY	3 cut(s)	21, 223, 423
HaeIII	GGCC	1 cut(s)	142
HapII	CCGG	1 cut(s)	294
HgaI	GACGC	4 cut(s)	98, 106, 173, 287
HhaI	GCGC	6 cut(s)	20, 156, 162, 222, 366, 422
Hin1I	GRCGYC	3 cut(s)	165, 279, 420
Hin1II	CATG	3 cut(s)	58, 235, 370
Hin6I	GCGC	6 cut(s)	18, 154, 160, 220, 364, 420
HinP1I	GCGC	6 cut(s)	18, 154, 160, 220, 364, 420
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HinfI	GANTC	4 cut(s)	8, 65, 325, 428
HpaII	CCGG	1 cut(s)	294
HphI	GGTGA	2 cut(s)	115, 187
Hpy166II	GTNNAC	3 cut(s)	175, 343, 454
Hpy188I	TCNGA	6 cut(s)	7, 13, 330, 427, 433, 448
Hpy188III	TCNNGA	1 cut(s)	187
Hpy8I	GTNNAC	3 cut(s)	175, 343, 454
Hpy99I	CGWCG	4 cut(s)	92, 167, 173, 245
HpyAV	CCTTC	2 cut(s)	139, 292
HpyCH4III	ACNGT	1 cut(s)	379
HpyCH4IV	ACGT	1 cut(s)	450
HpyCH4V	TGCA	1 cut(s)	337
HpyF10VI	GCNNNNNNNGC	7 cut(s)	26, 151, 245, 287, 404, 407, 470
HpyF3I	CTNAG	1 cut(s)	486
HpySE526I	ACGT	1 cut(s)	450
Hsp92I	GRCGYC	3 cut(s)	165, 279, 420
Hsp92II	CATG	3 cut(s)	58, 235, 370
HspAI	GCGC	6 cut(s)	18, 154, 160, 220, 364, 420
KasI	GGCGCC	1 cut(s)	419
Kzo9I	GATC	2 cut(s)	330, 354
LmnI	GCTCC	2 cut(s)	58, 305
LpnPI	CCDG	7 cut(s)	108, 127, 164, 307, 323, 347, 487
Lsp1109I	GCAGC	7 cut(s)	88, 223, 385, 394, 424, 451, 454
LweI	GCATC	1 cut(s)	472
MaeII	ACGT	1 cut(s)	450
MalI	GATC	2 cut(s)	332, 356
MboI	GATC	2 cut(s)	330, 354
MflI	RGATCY	1 cut(s)	330
MhlI	GDGCHC	2 cut(s)	63, 446
Mly113I	GGCGCC	1 cut(s)	420
MlyI	GAGTC	1 cut(s)	437
MspA1I	CMGCKG	3 cut(s)	398, 407, 464
MspI	CCGG	1 cut(s)	294
MvnI	CGCG	3 cut(s)	160, 162, 308
MwoI	GCNNNNNNNGC	7 cut(s)	26, 151, 245, 287, 404, 407, 470
NarI	GGCGCC	1 cut(s)	420
NcoI	CCATGG	2 cut(s)	54, 231
NdeI	CATATG	1 cut(s)	137
NdeII	GATC	2 cut(s)	330, 354
NlaIII	CATG	3 cut(s)	58, 235, 370
NlaIV	GGNNCC	5 cut(s)	60, 229, 301, 421, 456
NspI	RCATGY	1 cut(s)	370
PaeI	GCATGC	1 cut(s)	370
PfeI	GAWTC	3 cut(s)	8, 65, 325
PflFI	GACNNNGTC	2 cut(s)	167, 377
PleI	GAGTC	1 cut(s)	436
PluTI	GGCGCC	1 cut(s)	423
PpsI	GAGTC	1 cut(s)	436
Psp124BI	GAGCTC	1 cut(s)	446
PspFI	CCCAGC	2 cut(s)	113, 150
PspN4I	GGNNCC	5 cut(s)	60, 229, 301, 421, 456
PspPI	GGNCC	1 cut(s)	454
PstI	CTGCAG	1 cut(s)	339
PstNI	CAGNNNCTG	1 cut(s)	334
PsuI	RGATCY	1 cut(s)	330
PsyI	GACNNNGTC	2 cut(s)	167, 377
RsaI	GTAC	1 cut(s)	500
RsaNI	GTAC	1 cut(s)	499
SacI	GAGCTC	1 cut(s)	446
Sau3AI	GATC	2 cut(s)	330, 354
Sau96I	GGNCC	1 cut(s)	454
SbfI	CCTGCAGG	1 cut(s)	339
ScaI	AGTACT	1 cut(s)	500
SchI	GAGTC	1 cut(s)	437
SdaI	CCTGCAGG	1 cut(s)	339
SduI	GDGCHC	2 cut(s)	63, 446
SetI	ASST	6 cut(s)	50, 100, 128, 342, 446, 453
SfaNI	GCATC	1 cut(s)	472
SfcI	CTRYAG	1 cut(s)	335
SfoI	GGCGCC	1 cut(s)	421
SgrAI	CRCCGGYG	1 cut(s)	293
SinI	GGWCC	1 cut(s)	454
SphI	GCATGC	1 cut(s)	370
Sse8387I	CCTGCAGG	1 cut(s)	339
SspDI	GGCGCC	1 cut(s)	419
SstI	GAGCTC	1 cut(s)	446
StyI	CCWWGG	3 cut(s)	54, 231, 348
TaaI	ACNGT	1 cut(s)	379
TaiI	ACGT	1 cut(s)	453
TaqI	TCGA	3 cut(s)	186, 270, 372
TaqII	GACCGA	1 cut(s)	326
TatI	WGTACW	1 cut(s)	498
TauI	GCSGC	7 cut(s)	23, 145, 290, 293, 308, 398, 473
TfiI	GAWTC	3 cut(s)	8, 65, 325
TscAI	CASTG	1 cut(s)	481
TseI	GCWGC	7 cut(s)	76, 236, 398, 407, 437, 464, 467
TspRI	CASTG	1 cut(s)	481
Tth111I	GACNNNGTC	2 cut(s)	167, 377
VpaK11BI	GGWCC	1 cut(s)	454
XagI	CCTNNNNNAGG	1 cut(s)	269
XceI	RCATGY	1 cut(s)	370
ZrmI	AGTACT	1 cut(s)	500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.