Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004046.1

Orthogroup ID

OG0010075

Physical Location & Seq

Genomic Coordinates Reverse (-)

70993 .. 71487

Gene Structure 495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004046.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

atgtcagacgccgagagcaccctggaagccgtcgattcccaagagccacccaagcagcaggaatcacaggatcggaagcccagctccggcgccgcctacagcctttggccgccgactgaccgcacccgcaacgccgtcgtcgaccgtctcatcgagaccctcagcactccctccccgctctccagacgatacggcaccttgtccgccgacgaggccaacgaggagtcccgccgaatcgagcaagacgccttcgccgccgccgggggatccgccgccacggaggtcagcggcgagaacgggatgaagatcctgcagatctactccaaggagatcagcaagcgcatgctcgaggtcgtcaaggctaagaacgccgctgcttctgctgctgaaaacggcgcgtccgagaccgccgagactggtagcaccaccgccgccgacgatgccgccgccgccgttcccaatgaggatgtcaagactgagactgaggcaacctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005640 GO:0005737 GO:0005794 GO:0005829 GO:0005886 GO:0007049 GO:0007275 GO:0008150 GO:0009791 GO:0009987 GO:0012505 GO:0016020 GO:0016363 GO:0019867 GO:0022622 GO:0031090 GO:0031965 GO:0031967 GO:0031968 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0034399 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0070013 GO:0071944 GO:0090696 GO:0098588 GO:0098805 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WPP

Protein Analysis

164

Amino Acids

17.28

Weight (kDa)

4.48

Isoelectric Point (pI)

59.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47200 AT5G27940 AT5G43070
fragaria_vesca	FvH4_2g33670 FvH4_2g33670
malus_domestica	MD08G1091600.v1.1 MD15G1075600.v1.1
prunus_persica	Prupe.1G429000_v2.0.a1
pyrus_communis	pycom08g07390 pycom15g07080
rosa_chinensis	RchiOBHm_Chr6g0308881
rosa_laevigata	RLG00000010608
rosa_multiflora	Rmu_sc0004046.1_g000014
rosa_roxburghii	Rroxscaffold_7G00159820
rosa_rugosa	Rorug06G0368900 Rorug06G0369000
rosa_samantha	Rh6AG480500 Rh6BG490000 Rh6CG495400 Rh6DG480800
rosa_wichuraiana	Rw6G041880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	89, 194
AccBSI	CCGCTC	1 cut(s)	178
AccI	GTMKAC	1 cut(s)	141
AccII	CGCG	1 cut(s)	398
AclWI	GGATC	4 cut(s)	78, 261, 274, 301
AcoI	YGGCCR	1 cut(s)	107
AcyI	GRCGYC	3 cut(s)	9, 90, 246
AfiI	CCNNNNNNNGG	2 cut(s)	86, 261
AjnI	CCWGG	1 cut(s)	21
AluBI	AGCT	1 cut(s)	84
AluI	AGCT	1 cut(s)	84
Alw21I	GWGCWC	1 cut(s)	20
Alw26I	GTCTC	5 cut(s)	149, 152, 398, 407, 473
AlwI	GGATC	4 cut(s)	78, 261, 274, 301
Ama87I	CYCGRG	1 cut(s)	347
AoxI	GGCC	2 cut(s)	107, 213
ApeKI	GCWGC	3 cut(s)	55, 374, 383
AspLEI	GCGC	3 cut(s)	92, 342, 398
AsuC2I	CCSGG	1 cut(s)	262
AvaI	CYCGRG	1 cut(s)	347
BamHI	GGATCC	1 cut(s)	266
BanI	GGYRCC	2 cut(s)	89, 194
Bbv12I	GWGCWC	1 cut(s)	20
BbvCI	CCTCAGC	1 cut(s)	161
BbvI	GCAGC	3 cut(s)	67, 361, 370
BceAI	ACGGC	5 cut(s)	14, 119, 208, 409, 437
BcgI	CGANNNNNNTGC	2 cut(s)	118, 152
BciT130I	CCWGG	1 cut(s)	23
BcnI	CCSGG	1 cut(s)	262
BcoDI	GTCTC	5 cut(s)	149, 152, 398, 407, 473
BfmI	CTRYAG	2 cut(s)	97, 311
BfoI	RGCGCY	1 cut(s)	93
BglI	GCCNNNNNGGC	1 cut(s)	212
BglII	AGATCT	1 cut(s)	315
Bme1390I	CCNGG	2 cut(s)	23, 262
BmeT110I	CYCGRG	1 cut(s)	347
BmiI	GGNNCC	3 cut(s)	91, 196, 268
BmrFI	CCNGG	2 cut(s)	23, 262
BmsI	GCATC	1 cut(s)	430
BpmI	CTGGAG	1 cut(s)	166
Bpu10I	CCTNAGC	1 cut(s)	161
BpuMI	CCSGG	1 cut(s)	262
BsaBI	GATNNNNATC	1 cut(s)	305
BsaHI	GRCGYC	3 cut(s)	9, 90, 246
BsaI	GGTCTC	2 cut(s)	149, 398
BsaJI	CCNNGG	4 cut(s)	21, 261, 276, 324
Bsc4I	CCNNNNNNNGG	2 cut(s)	86, 261
Bse1I	ACTGG	1 cut(s)	421
Bse8I	GATNNNNATC	1 cut(s)	305
BseBI	CCWGG	1 cut(s)	23
BseDI	CCNNGG	4 cut(s)	21, 261, 276, 324
BseGI	GGATG	2 cut(s)	306, 472
BseJI	GATNNNNATC	1 cut(s)	305
BseLI	CCNNNNNNNGG	2 cut(s)	86, 261
BseMII	CTCAG	3 cut(s)	175, 468, 474
BseNI	ACTGG	1 cut(s)	421
BseRI	GAGGAG	1 cut(s)	236
BseXI	GCAGC	3 cut(s)	67, 361, 370
BseYI	CCCAGC	1 cut(s)	80
Bsh1236I	CGCG	1 cut(s)	398
Bsh1285I	CGRYCG	1 cut(s)	145
BshFI	GGCC	2 cut(s)	109, 215
BshNI	GGYRCC	2 cut(s)	89, 194
BsiEI	CGRYCG	1 cut(s)	145
BsiHKAI	GWGCWC	1 cut(s)	20
BsiHKCI	CYCGRG	1 cut(s)	347
BsiSI	CCGG	2 cut(s)	87, 261
BslFI	GGGAC	1 cut(s)	211
BslI	CCNNNNNNNGG	2 cut(s)	86, 261
BsmAI	GTCTC	5 cut(s)	149, 152, 398, 407, 473
BsmBI	CGTCTC	1 cut(s)	152
BsmFI	GGGAC	1 cut(s)	211
BsnI	GGCC	2 cut(s)	109, 215
Bso31I	GGTCTC	2 cut(s)	149, 398
BsoBI	CYCGRG	1 cut(s)	347
Bsp1286I	GDGCHC	1 cut(s)	20
Bsp143I	GATC	5 cut(s)	70, 266, 306, 315, 330
BspANI	GGCC	2 cut(s)	109, 215
BspCNI	CTCAG	3 cut(s)	174, 469, 475
BspFNI	CGCG	1 cut(s)	398
BspLI	GGNNCC	3 cut(s)	91, 196, 268
BspMAI	CTGCAG	1 cut(s)	315
BspPI	GGATC	4 cut(s)	78, 261, 274, 301
BspT107I	GGYRCC	2 cut(s)	89, 194
BspTNI	GGTCTC	2 cut(s)	149, 398
BsrBI	CCGCTC	1 cut(s)	178
BsrI	ACTGG	1 cut(s)	421
BssECI	CCNNGG	4 cut(s)	21, 261, 276, 324
BssMI	GATC	5 cut(s)	70, 266, 306, 315, 330
BssNI	GRCGYC	3 cut(s)	9, 90, 246
BssT1I	CCWWGG	1 cut(s)	324
Bst2UI	CCWGG	1 cut(s)	23
Bst4CI	ACNGT	1 cut(s)	146
BstACI	GRCGYC	3 cut(s)	9, 90, 246
BstC8I	GCNNGC	2 cut(s)	338, 344
BstDEI	CTNAG	4 cut(s)	161, 363, 477, 483
BstDSI	CCRYGG	1 cut(s)	276
BstF5I	GGATG	2 cut(s)	306, 472
BstFNI	CGCG	1 cut(s)	398
BstH2I	RGCGCY	1 cut(s)	93
BstHHI	GCGC	3 cut(s)	92, 342, 398
BstKTI	GATC	5 cut(s)	73, 269, 309, 318, 333
BstMAI	GTCTC	5 cut(s)	149, 152, 398, 407, 473
BstMBI	GATC	5 cut(s)	70, 266, 306, 315, 330
BstMCI	CGRYCG	1 cut(s)	145
BstMWI	GCNNNNNNNGC	8 cut(s)	52, 212, 254, 368, 380, 383, 440, 449
BstNI	CCWGG	1 cut(s)	23
BstNSI	RCATGY	1 cut(s)	346
BstSCI	CCNGG	2 cut(s)	21, 260
BstSFI	CTRYAG	2 cut(s)	97, 311
BstUI	CGCG	1 cut(s)	398
BstV1I	GCAGC	3 cut(s)	67, 361, 370
BstX2I	RGATCY	3 cut(s)	266, 306, 315
BstYI	RGATCY	3 cut(s)	266, 306, 315
BsuRI	GGCC	2 cut(s)	109, 215
BtgI	CCRYGG	1 cut(s)	276
BtsCI	GGATG	2 cut(s)	306, 472
Cac8I	GCNNGC	2 cut(s)	338, 344
CfoI	GCGC	3 cut(s)	92, 342, 398
CseI	GACGC	3 cut(s)	17, 254, 387
CviAII	CATG	1 cut(s)	343
CviJI	RGCY	8 cut(s)	29, 46, 79, 84, 102, 109, 215, 362
CviKI_1	RGCY	8 cut(s)	29, 46, 79, 84, 102, 109, 215, 362
DdeI	CTNAG	4 cut(s)	161, 363, 477, 483
DinI	GGCGCC	1 cut(s)	91
DpnI	GATC	5 cut(s)	72, 268, 308, 317, 332
DpnII	GATC	5 cut(s)	70, 266, 306, 315, 330
EaeI	YGGCCR	1 cut(s)	107
EciI	GGCGGA	2 cut(s)	193, 259
Eco130I	CCWWGG	1 cut(s)	324
Eco31I	GGTCTC	2 cut(s)	149, 398
Eco88I	CYCGRG	1 cut(s)	347
EcoRII	CCWGG	1 cut(s)	21
EcoT14I	CCWWGG	1 cut(s)	324
EgeI	GGCGCC	1 cut(s)	91
EheI	GGCGCC	1 cut(s)	91
ErhI	CCWWGG	1 cut(s)	324
Esp3I	CGTCTC	1 cut(s)	152
FaeI	CATG	1 cut(s)	346
FaiI	YATR	1 cut(s)	344
FaqI	GGGAC	1 cut(s)	211
FatI	CATG	1 cut(s)	342
FauI	CCCGC	3 cut(s)	134, 183, 236
FblI	GTMKAC	1 cut(s)	141
FokI	GGATG	2 cut(s)	313, 479
GlaI	GCGC	3 cut(s)	91, 341, 397
GsaI	CCCAGC	1 cut(s)	84
GsuI	CTGGAG	1 cut(s)	166
HaeII	RGCGCY	1 cut(s)	93
HaeIII	GGCC	2 cut(s)	109, 215
HapII	CCGG	2 cut(s)	87, 261
HgaI	GACGC	3 cut(s)	17, 254, 387
HhaI	GCGC	3 cut(s)	92, 342, 398
Hin1I	GRCGYC	3 cut(s)	9, 90, 246
Hin1II	CATG	1 cut(s)	346
Hin6I	GCGC	3 cut(s)	90, 340, 396
HinP1I	GCGC	3 cut(s)	90, 340, 396
HincII	GTYRAC	1 cut(s)	142
HindII	GTYRAC	1 cut(s)	142
HinfI	GANTC	4 cut(s)	35, 62, 224, 234
HpaII	CCGG	2 cut(s)	87, 261
Hpy166II	GTNNAC	1 cut(s)	142
Hpy188I	TCNGA	3 cut(s)	7, 75, 403
Hpy188III	TCNNGA	3 cut(s)	154, 183, 472
Hpy8I	GTNNAC	1 cut(s)	142
Hpy99I	CGWCG	5 cut(s)	35, 140, 143, 212, 440
HpyAV	CCTTC	1 cut(s)	259
HpyCH4III	ACNGT	1 cut(s)	146
HpyCH4V	TGCA	1 cut(s)	313
HpyF10VI	GCNNNNNNNGC	8 cut(s)	52, 212, 254, 368, 380, 383, 440, 449
HpyF3I	CTNAG	4 cut(s)	161, 363, 477, 483
Hsp92I	GRCGYC	3 cut(s)	9, 90, 246
Hsp92II	CATG	1 cut(s)	346
HspAI	GCGC	3 cut(s)	90, 340, 396
KasI	GGCGCC	1 cut(s)	89
Kzo9I	GATC	5 cut(s)	70, 266, 306, 315, 330
LmnI	GCTCC	1 cut(s)	89
Lsp1109I	GCAGC	3 cut(s)	67, 361, 370
LweI	GCATC	1 cut(s)	430
MalI	GATC	5 cut(s)	72, 268, 308, 317, 332
MbiI	CCGCTC	1 cut(s)	178
MboI	GATC	5 cut(s)	70, 266, 306, 315, 330
MboII	GAAGA	1 cut(s)	316
MflI	RGATCY	3 cut(s)	266, 306, 315
MhlI	GDGCHC	1 cut(s)	20
Mly113I	GGCGCC	1 cut(s)	90
MlyI	GAGTC	1 cut(s)	233
MnlI	CCTC	8 cut(s)	170, 181, 205, 214, 274, 343, 457, 478
MspA1I	CMGCKG	2 cut(s)	288, 374
MspI	CCGG	2 cut(s)	87, 261
MspR9I	CCNGG	2 cut(s)	23, 262
MvaI	CCWGG	1 cut(s)	23
MvnI	CGCG	1 cut(s)	398
MwoI	GCNNNNNNNGC	8 cut(s)	52, 212, 254, 368, 380, 383, 440, 449
NarI	GGCGCC	1 cut(s)	90
NciI	CCSGG	1 cut(s)	262
NdeII	GATC	5 cut(s)	70, 266, 306, 315, 330
NlaIII	CATG	1 cut(s)	346
NlaIV	GGNNCC	3 cut(s)	91, 196, 268
NmeAIII	GCCGAG	2 cut(s)	37, 436
NspI	RCATGY	1 cut(s)	346
PaeI	GCATGC	1 cut(s)	346
PaeR7I	CTCGAG	1 cut(s)	347
PcsI	WCGNNNNNNNCGW	3 cut(s)	138, 216, 399
PfeI	GAWTC	3 cut(s)	35, 62, 234
PleI	GAGTC	1 cut(s)	232
PluTI	GGCGCC	1 cut(s)	93
PpsI	GAGTC	1 cut(s)	232
Psp6I	CCWGG	1 cut(s)	21
PspFI	CCCAGC	1 cut(s)	80
PspGI	CCWGG	1 cut(s)	21
PspN4I	GGNNCC	3 cut(s)	91, 196, 268
PspXI	VCTCGAGB	1 cut(s)	347
PstI	CTGCAG	1 cut(s)	315
PsuI	RGATCY	3 cut(s)	266, 306, 315
SalI	GTCGAC	1 cut(s)	140
Sau3AI	GATC	5 cut(s)	70, 266, 306, 315, 330
SchI	GAGTC	1 cut(s)	233
ScrFI	CCNGG	2 cut(s)	23, 262
SduI	GDGCHC	1 cut(s)	20
SetI	ASST	5 cut(s)	86, 200, 285, 354, 494
SfaNI	GCATC	1 cut(s)	430
SfcI	CTRYAG	2 cut(s)	97, 311
SfoI	GGCGCC	1 cut(s)	91
Sfr274I	CTCGAG	1 cut(s)	347
SlaI	CTCGAG	1 cut(s)	347
SmlI	CTYRAG	1 cut(s)	347
SmoI	CTYRAG	1 cut(s)	347
SphI	GCATGC	1 cut(s)	346
SspDI	GGCGCC	1 cut(s)	89
StyD4I	CCNGG	2 cut(s)	21, 260
StyI	CCWWGG	1 cut(s)	324
TaaI	ACNGT	1 cut(s)	146
TaqI	TCGA	5 cut(s)	33, 141, 153, 237, 348
TfiI	GAWTC	3 cut(s)	35, 62, 234
TseI	GCWGC	3 cut(s)	55, 374, 383
TspDTI	ATGAA	1 cut(s)	317
TspGWI	ACGGA	1 cut(s)	293
XceI	RCATGY	1 cut(s)	346
XhoI	CTCGAG	1 cut(s)	347
XmiI	GTMKAC	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.