Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010075

Physical Location & Seq

Genomic Coordinates Reverse (-)

17288965 .. 17289958

Gene Structure 994 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G43070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGCCGAAACCGAAACGGAGTCGATCACCACCTCTTCTCCACCGCCGATCTCAGAAACCGAAAACTCCACCACATTACCAACAACGGAGACGGAGAAGAATCCCAATCCGGTAACCATTTCCCTCAGAATCTGGCCACCGACTCAAAAAACTCGCGACGCCGTGATTAACCGTCTGATCGAAACACTGTCAACCGAATCAATCCTCTCCAAGAGATTCGGATCTCTTGAATCCGAAGAAGCTTCCTCCGTCGCGAAATCAATCGAAGACGAAGCTTACGCCATCGCTTCTGCCACCGTATTCGGTGATGACGACGGGATCGAGATTCTTAAAGCTTATTCTAAAGAGATTAGTAAACGTATGCTTGAATCTGTTAAGGCTAAGAGTAATGTGGCTTCTCCTCCACCGAAGGATGGTGATGGAATTGAATCAGCTGTTGATTCGAAGATTGATTCAAGTGAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005640 GO:0005737 GO:0005794 GO:0005829 GO:0005886 GO:0007049 GO:0007275 GO:0008150 GO:0009791 GO:0009987 GO:0012505 GO:0016020 GO:0016363 GO:0019867 GO:0022622 GO:0031090 GO:0031965 GO:0031967 GO:0031968 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0034399 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0070013 GO:0071944 GO:0090696 GO:0098588 GO:0098805 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WPP

Protein Analysis

155

Amino Acids

16.63

Weight (kDa)

4.46

Isoelectric Point (pI)

70.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WPP	PF13943	41 - 132	2.3e-37	WPP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47200 AT5G27940 AT5G43070
fragaria_vesca	FvH4_2g33670 FvH4_2g33670
malus_domestica	MD08G1091600.v1.1 MD15G1075600.v1.1
prunus_persica	Prupe.1G429000_v2.0.a1
pyrus_communis	pycom08g07390 pycom15g07080
rosa_chinensis	RchiOBHm_Chr6g0308881
rosa_laevigata	RLG00000010608
rosa_multiflora	Rmu_sc0004046.1_g000014
rosa_roxburghii	Rroxscaffold_7G00159820
rosa_rugosa	Rorug06G0368900 Rorug06G0369000
rosa_samantha	Rh6AG480500 Rh6BG490000 Rh6CG495400 Rh6DG480800
rosa_wichuraiana	Rw6G041880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	156, 254
AciI	CCGC	1 cut(s)	44
AclWI	GGATC	2 cut(s)	229, 326
AcoI	YGGCCR	2 cut(s)	3, 134
AcyI	GRCGYC	1 cut(s)	159
AfiI	CCNNNNNNNGG	1 cut(s)	413
AgsI	TTSAA	4 cut(s)	230, 368, 428, 456
AluBI	AGCT	5 cut(s)	242, 275, 335, 434, 464
AluI	AGCT	5 cut(s)	242, 275, 335, 434, 464
Alw26I	GTCTC	1 cut(s)	83
AlwI	GGATC	2 cut(s)	229, 326
AlwNI	CAGNNNCTG	1 cut(s)	132
AoxI	GGCC	2 cut(s)	3, 134
AsuHPI	GGTGA	3 cut(s)	19, 317, 428
AsuII	TTCGAA	1 cut(s)	443
BalI	TGGCCA	1 cut(s)	136
BarI	GAAGNNNNNNTAC	2 cut(s)	379, 411
BbsI	GAAGAC	1 cut(s)	273
BccI	CCATC	3 cut(s)	290, 407, 413
BceAI	ACGGC	1 cut(s)	146
BcoDI	GTCTC	1 cut(s)	83
BpiI	GAAGAC	1 cut(s)	273
Bpu14I	TTCGAA	1 cut(s)	443
BsaBI	GATNNNNATC	1 cut(s)	220
BsaHI	GRCGYC	1 cut(s)	159
BsaWI	WCCGGW	1 cut(s)	109
BsaXI	ACNNNNNCTCC	2 cut(s)	22, 52
Bsc4I	CCNNNNNNNGG	1 cut(s)	413
Bse8I	GATNNNNATC	1 cut(s)	220
BseGI	GGATG	1 cut(s)	418
BseJI	GATNNNNATC	1 cut(s)	220
BseLI	CCNNNNNNNGG	1 cut(s)	413
BseMII	CTCAG	2 cut(s)	66, 139
BseRI	GAGGAG	1 cut(s)	390
Bsh1236I	CGCG	2 cut(s)	156, 254
BshFI	GGCC	2 cut(s)	5, 136
BsiSI	CCGG	1 cut(s)	110
BslI	CCNNNNNNNGG	1 cut(s)	413
BsmAI	GTCTC	1 cut(s)	83
BsmBI	CGTCTC	1 cut(s)	83
BsnI	GGCC	2 cut(s)	5, 136
Bsp119I	TTCGAA	1 cut(s)	443
Bsp143I	GATC	5 cut(s)	24, 48, 177, 221, 318
Bsp68I	TCGCGA	2 cut(s)	156, 254
BspACI	CCGC	1 cut(s)	44
BspANI	GGCC	2 cut(s)	5, 136
BspCNI	CTCAG	2 cut(s)	65, 138
BspFNI	CGCG	2 cut(s)	156, 254
BspPI	GGATC	2 cut(s)	229, 326
BspT104I	TTCGAA	1 cut(s)	443
BssMI	GATC	5 cut(s)	24, 48, 177, 221, 318
BssNI	GRCGYC	1 cut(s)	159
Bst4CI	ACNGT	3 cut(s)	173, 189, 298
Bst6I	CTCTTC	1 cut(s)	40
BstACI	GRCGYC	1 cut(s)	159
BstBI	TTCGAA	1 cut(s)	443
BstDEI	CTNAG	3 cut(s)	52, 125, 381
BstEII	GGTNACC	1 cut(s)	112
BstF5I	GGATG	1 cut(s)	418
BstFNI	CGCG	2 cut(s)	156, 254
BstKTI	GATC	5 cut(s)	27, 51, 180, 224, 321
BstMAI	GTCTC	1 cut(s)	83
BstMBI	GATC	5 cut(s)	24, 48, 177, 221, 318
BstPI	GGTNACC	1 cut(s)	112
BstUI	CGCG	2 cut(s)	156, 254
BstV2I	GAAGAC	1 cut(s)	273
BstX2I	RGATCY	1 cut(s)	221
BstYI	RGATCY	1 cut(s)	221
BsuRI	GGCC	2 cut(s)	5, 136
BtgZI	GCGATG	1 cut(s)	268
BtsCI	GGATG	1 cut(s)	418
BtsIMutI	CAGTG	1 cut(s)	185
BtuMI	TCGCGA	2 cut(s)	156, 254
CaiI	CAGNNNCTG	1 cut(s)	132
CseI	GACGC	1 cut(s)	167
CviJI	RGCY	9 cut(s)	5, 136, 242, 275, 335, 380, 395, 434, 464
CviKI_1	RGCY	9 cut(s)	5, 136, 242, 275, 335, 380, 395, 434, 464
DdeI	CTNAG	3 cut(s)	52, 125, 381
DpnI	GATC	5 cut(s)	26, 50, 179, 223, 320
DpnII	GATC	5 cut(s)	24, 48, 177, 221, 318
EaeI	YGGCCR	2 cut(s)	3, 134
Eam1104I	CTCTTC	1 cut(s)	40
EarI	CTCTTC	1 cut(s)	40
Eco91I	GGTNACC	1 cut(s)	112
EcoO65I	GGTNACC	1 cut(s)	112
Esp3I	CGTCTC	1 cut(s)	83
FaiI	YATR	1 cut(s)	362
FalI	AAGNNNNNCTT	1 cut(s)	448
FokI	GGATG	1 cut(s)	425
HaeIII	GGCC	2 cut(s)	5, 136
HapII	CCGG	1 cut(s)	110
HgaI	GACGC	1 cut(s)	167
Hin1I	GRCGYC	1 cut(s)	159
HincII	GTYRAC	1 cut(s)	192
HindII	GTYRAC	1 cut(s)	192
HindIII	AAGCTT	4 cut(s)	240, 273, 333, 462
HpaII	CCGG	1 cut(s)	110
HphI	GGTGA	3 cut(s)	19, 317, 428
Hpy166II	GTNNAC	2 cut(s)	192, 356
Hpy188I	TCNGA	5 cut(s)	55, 128, 177, 221, 235
Hpy188III	TCNNGA	4 cut(s)	155, 227, 253, 322
Hpy8I	GTNNAC	2 cut(s)	192, 356
Hpy99I	CGWCG	3 cut(s)	161, 254, 317
HpyAV	CCTTC	1 cut(s)	403
HpyCH4III	ACNGT	3 cut(s)	173, 189, 298
HpyCH4IV	ACGT	1 cut(s)	358
HpyF3I	CTNAG	3 cut(s)	52, 125, 381
HpySE526I	ACGT	1 cut(s)	358
Hsp92I	GRCGYC	1 cut(s)	159
Kzo9I	GATC	5 cut(s)	24, 48, 177, 221, 318
LpnPI	CCDG	2 cut(s)	118, 123
MaeII	ACGT	1 cut(s)	358
MaeIII	GTNAC	1 cut(s)	112
MalI	GATC	5 cut(s)	26, 50, 179, 223, 320
MboI	GATC	5 cut(s)	24, 48, 177, 221, 318
MboII	GAAGA	5 cut(s)	27, 109, 248, 278, 457
MflI	RGATCY	1 cut(s)	221
MlsI	TGGCCA	1 cut(s)	136
MluCI	AATT	1 cut(s)	423
MluNI	TGGCCA	1 cut(s)	136
MlyI	GAGTC	2 cut(s)	29, 136
MnlI	CCTC	5 cut(s)	43, 134, 215, 256, 411
Mox20I	TGGCCA	1 cut(s)	136
MscI	TGGCCA	1 cut(s)	136
MseI	TTAA	3 cut(s)	168, 330, 375
Msp20I	TGGCCA	1 cut(s)	136
MspA1I	CMGCKG	1 cut(s)	434
MspI	CCGG	1 cut(s)	110
MvnI	CGCG	2 cut(s)	156, 254
NdeII	GATC	5 cut(s)	24, 48, 177, 221, 318
NruI	TCGCGA	2 cut(s)	156, 254
NspV	TTCGAA	1 cut(s)	443
PcsI	WCGNNNNNNNCGW	2 cut(s)	309, 318
PleI	GAGTC	2 cut(s)	28, 136
PpsI	GAGTC	2 cut(s)	28, 136
PspEI	GGTNACC	1 cut(s)	112
PstNI	CAGNNNCTG	1 cut(s)	132
PsuI	RGATCY	1 cut(s)	221
PvuII	CAGCTG	1 cut(s)	434
RruI	TCGCGA	2 cut(s)	156, 254
SaqAI	TTAA	3 cut(s)	168, 330, 375
Sau3AI	GATC	5 cut(s)	24, 48, 177, 221, 318
SchI	GAGTC	2 cut(s)	29, 136
SetI	ASST	7 cut(s)	35, 244, 277, 337, 361, 436, 466
SfuI	TTCGAA	1 cut(s)	443
Sse9I	AATT	1 cut(s)	423
SsiI	CCGC	1 cut(s)	44
TaaI	ACNGT	3 cut(s)	173, 189, 298
TaiI	ACGT	1 cut(s)	361
TaqI	TCGA	5 cut(s)	23, 180, 264, 321, 443
TasI	AATT	1 cut(s)	423
Tru1I	TTAA	3 cut(s)	168, 330, 375
Tru9I	TTAA	3 cut(s)	168, 330, 375
TscAI	CASTG	1 cut(s)	192
TspGWI	ACGGA	4 cut(s)	32, 101, 107, 238
TspRI	CASTG	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.