Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0010075

Physical Location & Seq

Genomic Coordinates Forward (+)

36830772 .. 36831546

Gene Structure 775 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G429000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGTCGGACTCAGAGATCACAGTCGCACCAAACCAGAGCTCAGCCATGGATGCCGAACCCCAAAACCAGCAGCCAGAAGACGCACCAGCTCATAAGCCACAGAAGCCCAGCCACGCCACCTCCTTTAGCATATGGCCGCCGACCCAGCGCACCCGCGAGGCCGTGGTGAACCGCCTCATCGAGACTCTCTCCACGCCCTCCCCTCTCTCCAAGCGCTACGGCACCTTGTCCGCTGACGAGGCCTCCGCCGCCGCCCGCCTCATCGAGGATGAAGCCTTCGCCGCCGCCGGTGGCTCCGCGGCGTCCGAGGAGGATGGGATTCAGATCCTGCAGGTCTACTCCAAGGAGATCAGCAAGCGTATGCTCGACACCGTCAAGTCCAGGACAGCCTCTGCTTCCGCTGCTCAAAACGGTGCGTCGGAGTCCGAGAACCCGAGCTCTGTTGAGGACCCCACCGCTGCTGCCCCCAGTGAGGATATCAAGACCGAACCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005640 GO:0005737 GO:0005794 GO:0005829 GO:0005886 GO:0007049 GO:0007275 GO:0008150 GO:0009791 GO:0009987 GO:0012505 GO:0016020 GO:0016363 GO:0019867 GO:0022622 GO:0031090 GO:0031965 GO:0031967 GO:0031968 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0034399 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0070013 GO:0071944 GO:0090696 GO:0098588 GO:0098805 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WPP

Protein Analysis

165

Amino Acids

17.3

Weight (kDa)

4.57

Isoelectric Point (pI)

64.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47200 AT5G27940 AT5G43070
fragaria_vesca	FvH4_2g33670 FvH4_2g33670
malus_domestica	MD08G1091600.v1.1 MD15G1075600.v1.1
prunus_persica	Prupe.1G429000_v2.0.a1
pyrus_communis	pycom08g07390 pycom15g07080
rosa_chinensis	RchiOBHm_Chr6g0308881
rosa_laevigata	RLG00000010608
rosa_multiflora	Rmu_sc0004046.1_g000014
rosa_roxburghii	Rroxscaffold_7G00159820
rosa_rugosa	Rorug06G0368900 Rorug06G0369000
rosa_samantha	Rh6AG480500 Rh6BG490000 Rh6CG495400 Rh6DG480800
rosa_wichuraiana	Rw6G041880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	322
AccB1I	GGYRCC	1 cut(s)	221
AccI	GTMKAC	1 cut(s)	336
AccII	CGCG	2 cut(s)	156, 299
AclWI	GGATC	1 cut(s)	319
AcoI	YGGCCR	1 cut(s)	134
AcyI	GRCGYC	1 cut(s)	302
AfeI	AGCGCT	1 cut(s)	215
AfiI	CCNNNNNNNGG	2 cut(s)	265, 472
AjnI	CCWGG	1 cut(s)	380
AluBI	AGCT	3 cut(s)	39, 89, 438
AluI	AGCT	3 cut(s)	39, 89, 438
Alw21I	GWGCWC	2 cut(s)	41, 440
Alw26I	GTCTC	1 cut(s)	176
AlwI	GGATC	1 cut(s)	319
AlwNI	CAGNNNCTG	2 cut(s)	328, 392
Ama87I	CYCGRG	1 cut(s)	433
Aor51HI	AGCGCT	1 cut(s)	215
AoxI	GGCC	3 cut(s)	134, 159, 240
ApeKI	GCWGC	4 cut(s)	70, 401, 458, 461
AspLEI	GCGC	2 cut(s)	150, 216
AspS9I	GGNCC	1 cut(s)	448
AsuHPI	GGTGA	1 cut(s)	178
AvaI	CYCGRG	1 cut(s)	433
AvaII	GGWCC	1 cut(s)	448
BanI	GGYRCC	1 cut(s)	221
BanII	GRGCYC	2 cut(s)	41, 440
BbsI	GAAGAC	1 cut(s)	84
Bbv12I	GWGCWC	2 cut(s)	41, 440
BbvI	GCAGC	4 cut(s)	82, 388, 445, 448
BccI	CCATC	1 cut(s)	308
BceAI	ACGGC	2 cut(s)	146, 235
BciT130I	CCWGG	1 cut(s)	382
BcoDI	GTCTC	1 cut(s)	176
BfaI	CTAG	1 cut(s)	493
BfmI	CTRYAG	1 cut(s)	329
BfoI	RGCGCY	1 cut(s)	217
BfuAI	ACCTGC	1 cut(s)	322
BlpI	GCTNAGC	1 cut(s)	40
Bme1390I	CCNGG	1 cut(s)	382
Bme18I	GGWCC	1 cut(s)	448
BmeT110I	CYCGRG	1 cut(s)	433
BmgT120I	GGNCC	1 cut(s)	448
BmiI	GGNNCC	3 cut(s)	223, 295, 450
BmrFI	CCNGG	1 cut(s)	382
BmrI	ACTGGG	1 cut(s)	462
BmsI	GCATC	1 cut(s)	40
BmuI	ACTGGG	1 cut(s)	462
BpiI	GAAGAC	1 cut(s)	84
BplI	GAGNNNNNCTC	2 cut(s)	173, 205
Bpu1102I	GCTNAGC	1 cut(s)	40
BsaBI	GATNNNNATC	1 cut(s)	323
BsaHI	GRCGYC	1 cut(s)	302
BsaJI	CCNNGG	5 cut(s)	45, 162, 297, 306, 342
BsaXI	ACNNNNNCTCC	4 cut(s)	104, 134, 227, 257
Bsc4I	CCNNNNNNNGG	2 cut(s)	265, 472
Bse118I	RCCGGY	1 cut(s)	287
Bse1I	ACTGG	1 cut(s)	468
Bse8I	GATNNNNATC	1 cut(s)	323
BseBI	CCWGG	1 cut(s)	382
BseDI	CCNNGG	5 cut(s)	45, 162, 297, 306, 342
BseGI	GGATG	3 cut(s)	55, 274, 319
BseJI	GATNNNNATC	1 cut(s)	323
BseLI	CCNNNNNNNGG	2 cut(s)	265, 472
BseMII	CTCAG	2 cut(s)	24, 54
BseNI	ACTGG	1 cut(s)	468
BseRI	GAGGAG	1 cut(s)	323
BseXI	GCAGC	4 cut(s)	82, 388, 445, 448
BseYI	CCCAGC	2 cut(s)	107, 144
Bsh1236I	CGCG	2 cut(s)	156, 299
BshFI	GGCC	3 cut(s)	136, 161, 242
BshNI	GGYRCC	1 cut(s)	221
BsiHKAI	GWGCWC	2 cut(s)	41, 440
BsiHKCI	CYCGRG	1 cut(s)	433
BsiSI	CCGG	1 cut(s)	288
BslI	CCNNNNNNNGG	2 cut(s)	265, 472
BsmAI	GTCTC	1 cut(s)	176
BsnI	GGCC	3 cut(s)	136, 161, 242
BsoBI	CYCGRG	1 cut(s)	433
Bsp1286I	GDGCHC	2 cut(s)	41, 440
Bsp143I	GATC	3 cut(s)	15, 324, 348
Bsp1720I	GCTNAGC	1 cut(s)	40
Bsp19I	CCATGG	1 cut(s)	45
BspANI	GGCC	3 cut(s)	136, 161, 242
BspCNI	CTCAG	2 cut(s)	23, 53
BspFNI	CGCG	2 cut(s)	156, 299
BspLI	GGNNCC	3 cut(s)	223, 295, 450
BspMAI	CTGCAG	1 cut(s)	333
BspMI	ACCTGC	1 cut(s)	322
BspPI	GGATC	1 cut(s)	319
BspT107I	GGYRCC	1 cut(s)	221
BsrFI	RCCGGY	1 cut(s)	287
BsrI	ACTGG	1 cut(s)	468
BssAI	RCCGGY	1 cut(s)	287
BssECI	CCNNGG	5 cut(s)	45, 162, 297, 306, 342
BssMI	GATC	3 cut(s)	15, 324, 348
BssNI	GRCGYC	1 cut(s)	302
BssT1I	CCWWGG	2 cut(s)	45, 342
Bst2UI	CCWGG	1 cut(s)	382
Bst4CI	ACNGT	3 cut(s)	22, 373, 413
BstACI	GRCGYC	1 cut(s)	302
BstC8I	GCNNGC	2 cut(s)	256, 356
BstDEI	CTNAG	2 cut(s)	10, 40
BstDSI	CCRYGG	3 cut(s)	45, 162, 297
BstENI	CCTNNNNNAGG	1 cut(s)	263
BstF5I	GGATG	3 cut(s)	55, 274, 319
BstFNI	CGCG	2 cut(s)	156, 299
BstH2I	RGCGCY	1 cut(s)	217
BstHHI	GCGC	2 cut(s)	150, 216
BstKTI	GATC	3 cut(s)	18, 327, 351
BstMAI	GTCTC	1 cut(s)	176
BstMBI	GATC	3 cut(s)	15, 324, 348
BstMWI	GCNNNNNNNGC	7 cut(s)	50, 103, 145, 239, 248, 281, 401
BstNI	CCWGG	1 cut(s)	382
BstSCI	CCNGG	1 cut(s)	380
BstSFI	CTRYAG	1 cut(s)	329
BstUI	CGCG	2 cut(s)	156, 299
BstV1I	GCAGC	4 cut(s)	82, 388, 445, 448
BstV2I	GAAGAC	1 cut(s)	84
BstX2I	RGATCY	1 cut(s)	324
BstYI	RGATCY	1 cut(s)	324
BsuRI	GGCC	3 cut(s)	136, 161, 242
BtgI	CCRYGG	3 cut(s)	45, 162, 297
BtsCI	GGATG	3 cut(s)	55, 274, 319
BtsIMutI	CAGTG	1 cut(s)	475
BveI	ACCTGC	1 cut(s)	322
Cac8I	GCNNGC	2 cut(s)	256, 356
CaiI	CAGNNNCTG	2 cut(s)	328, 392
CfoI	GCGC	2 cut(s)	150, 216
Cfr10I	RCCGGY	1 cut(s)	287
Cfr13I	GGNCC	1 cut(s)	448
Cfr42I	CCGCGG	1 cut(s)	300
CseI	GACGC	3 cut(s)	89, 291, 405
CviAII	CATG	1 cut(s)	46
DdeI	CTNAG	2 cut(s)	10, 40
DpnI	GATC	3 cut(s)	17, 326, 350
DpnII	GATC	3 cut(s)	15, 324, 348
EaeI	YGGCCR	1 cut(s)	134
EciI	GGCGGA	1 cut(s)	235
Ecl136II	GAGCTC	2 cut(s)	39, 438
Eco130I	CCWWGG	2 cut(s)	45, 342
Eco147I	AGGCCT	1 cut(s)	242
Eco24I	GRGCYC	2 cut(s)	41, 440
Eco32I	GATATC	1 cut(s)	478
Eco47I	GGWCC	1 cut(s)	448
Eco47III	AGCGCT	1 cut(s)	215
Eco53kI	GAGCTC	2 cut(s)	39, 438
Eco88I	CYCGRG	1 cut(s)	433
EcoICRI	GAGCTC	2 cut(s)	39, 438
EcoNI	CCTNNNNNAGG	1 cut(s)	263
EcoO109I	RGGNCCY	1 cut(s)	448
EcoRII	CCWGG	1 cut(s)	380
EcoRV	GATATC	1 cut(s)	478
EcoT14I	CCWWGG	2 cut(s)	45, 342
EcoT38I	GRGCYC	2 cut(s)	41, 440
ErhI	CCWWGG	2 cut(s)	45, 342
FaeI	CATG	1 cut(s)	49
FaiI	YATR	5 cut(s)	47, 93, 131, 133, 362
FatI	CATG	1 cut(s)	45
FauI	CCCGC	2 cut(s)	161, 263
FauNDI	CATATG	1 cut(s)	131
FblI	GTMKAC	1 cut(s)	336
FokI	GGATG	3 cut(s)	62, 281, 326
FriOI	GRGCYC	2 cut(s)	41, 440
FspBI	CTAG	1 cut(s)	493
GlaI	GCGC	2 cut(s)	149, 215
GsaI	CCCAGC	2 cut(s)	111, 148
HaeII	RGCGCY	1 cut(s)	217
HaeIII	GGCC	3 cut(s)	136, 161, 242
HapII	CCGG	1 cut(s)	288
HgaI	GACGC	3 cut(s)	89, 291, 405
HhaI	GCGC	2 cut(s)	150, 216
Hin1I	GRCGYC	1 cut(s)	302
Hin1II	CATG	1 cut(s)	49
Hin6I	GCGC	2 cut(s)	148, 214
HinP1I	GCGC	2 cut(s)	148, 214
HinfI	GANTC	4 cut(s)	8, 184, 319, 422
HpaII	CCGG	1 cut(s)	288
HphI	GGTGA	1 cut(s)	178
Hpy166II	GTNNAC	2 cut(s)	169, 337
Hpy188I	TCNGA	6 cut(s)	7, 13, 307, 324, 421, 427
Hpy188III	TCNNGA	2 cut(s)	181, 481
Hpy8I	GTNNAC	2 cut(s)	169, 337
Hpy99I	CGWCG	1 cut(s)	421
HpyAV	CCTTC	1 cut(s)	286
HpyCH4III	ACNGT	3 cut(s)	22, 373, 413
HpyCH4V	TGCA	1 cut(s)	331
HpyF10VI	GCNNNNNNNGC	7 cut(s)	50, 103, 145, 239, 248, 281, 401
HpyF3I	CTNAG	2 cut(s)	10, 40
Hsp92I	GRCGYC	1 cut(s)	302
Hsp92II	CATG	1 cut(s)	49
HspAI	GCGC	2 cut(s)	148, 214
KspI	CCGCGG	1 cut(s)	300
Kzo9I	GATC	3 cut(s)	15, 324, 348
LmnI	GCTCC	1 cut(s)	299
Lsp1109I	GCAGC	4 cut(s)	82, 388, 445, 448
LweI	GCATC	1 cut(s)	40
MaeI	CTAG	1 cut(s)	493
MalI	GATC	3 cut(s)	17, 326, 350
MboI	GATC	3 cut(s)	15, 324, 348
MboII	GAAGA	1 cut(s)	89
MflI	RGATCY	1 cut(s)	324
MhlI	GDGCHC	2 cut(s)	41, 440
MlyI	GAGTC	3 cut(s)	2, 178, 431
MmeI	TCCRAC	1 cut(s)	399
MspA1I	CMGCKG	4 cut(s)	233, 299, 401, 458
MspI	CCGG	1 cut(s)	288
MspR9I	CCNGG	1 cut(s)	382
MvaI	CCWGG	1 cut(s)	382
MvnI	CGCG	2 cut(s)	156, 299
MwoI	GCNNNNNNNGC	7 cut(s)	50, 103, 145, 239, 248, 281, 401
NcoI	CCATGG	1 cut(s)	45
NdeI	CATATG	1 cut(s)	131
NdeII	GATC	3 cut(s)	15, 324, 348
NlaIII	CATG	1 cut(s)	49
NlaIV	GGNNCC	3 cut(s)	223, 295, 450
PceI	AGGCCT	1 cut(s)	242
PfeI	GAWTC	1 cut(s)	319
PflFI	GACNNNGTC	1 cut(s)	371
PfoI	TCCNGGA	1 cut(s)	380
PleI	GAGTC	3 cut(s)	2, 178, 430
PpsI	GAGTC	3 cut(s)	2, 178, 430
PpuMI	RGGWCCY	1 cut(s)	448
Psp124BI	GAGCTC	2 cut(s)	41, 440
Psp5II	RGGWCCY	1 cut(s)	448
Psp6I	CCWGG	1 cut(s)	380
PspFI	CCCAGC	2 cut(s)	107, 144
PspGI	CCWGG	1 cut(s)	380
PspN4I	GGNNCC	3 cut(s)	223, 295, 450
PspPI	GGNCC	1 cut(s)	448
PspPPI	RGGWCCY	1 cut(s)	448
PstI	CTGCAG	1 cut(s)	333
PstNI	CAGNNNCTG	2 cut(s)	328, 392
PsuI	RGATCY	1 cut(s)	324
PsyI	GACNNNGTC	1 cut(s)	371
SacI	GAGCTC	2 cut(s)	41, 440
SacII	CCGCGG	1 cut(s)	300
Sau3AI	GATC	3 cut(s)	15, 324, 348
Sau96I	GGNCC	1 cut(s)	448
SbfI	CCTGCAGG	1 cut(s)	333
SchI	GAGTC	3 cut(s)	2, 178, 431
ScrFI	CCNGG	1 cut(s)	382
SdaI	CCTGCAGG	1 cut(s)	333
SduI	GDGCHC	2 cut(s)	41, 440
SetI	ASST	6 cut(s)	41, 91, 122, 227, 336, 440
SfaNI	GCATC	1 cut(s)	40
SfcI	CTRYAG	1 cut(s)	329
Sfr303I	CCGCGG	1 cut(s)	300
SgrAI	CRCCGGYG	1 cut(s)	287
SgrBI	CCGCGG	1 cut(s)	300
SinI	GGWCC	1 cut(s)	448
Sse8387I	CCTGCAGG	1 cut(s)	333
SseBI	AGGCCT	1 cut(s)	242
SspMI	CTAG	1 cut(s)	493
SstI	GAGCTC	2 cut(s)	41, 440
StuI	AGGCCT	1 cut(s)	242
StyD4I	CCNGG	1 cut(s)	380
StyI	CCWWGG	2 cut(s)	45, 342
TaaI	ACNGT	3 cut(s)	22, 373, 413
TaqI	TCGA	3 cut(s)	180, 264, 366
TauI	GCSGC	6 cut(s)	139, 251, 254, 284, 287, 302
TfiI	GAWTC	1 cut(s)	319
TscAI	CASTG	1 cut(s)	475
TseI	GCWGC	4 cut(s)	70, 401, 458, 461
TspDTI	ATGAA	1 cut(s)	285
TspRI	CASTG	1 cut(s)	475
Tth111I	GACNNNGTC	1 cut(s)	371
VpaK11BI	GGWCC	1 cut(s)	448
XagI	CCTNNNNNAGG	1 cut(s)	263
XmiI	GTMKAC	1 cut(s)	336
XspI	CTAG	1 cut(s)	493

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.