Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0010075

Physical Location & Seq

Genomic Coordinates Forward (+)

2938589 .. 2939804

Gene Structure 1216 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010608

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGTCAGAAGCCGAGAGCACCCTGGAAGCCGTCGATTCCCAAGAGCCACCCAAGCAGCAGGAATCACAGGATCGGAAGCCCAGCTCCGGCGCCGCCTACAGCCTCTGGCCGCCGACCGACCGCACCCGCAACGCCGTCGTCGACCGTCTCATCGAGACCCTCACCACTCCCTCCCCGCTCTCCAGACGCTACGGCACCTTGTCCGCCGACGAGGCCAACGAGGAGTCCCGCCGAATCGAGCAAGACGCCTTCGCCGCCGCCGGGGGATCCGCCGCCACGGAGGTCAGCGGCGAGACCGGGATGAAGATCTTGCAGATCTACTCCAAGGAGATCAGCAAGCGCATGCTCGAGGTCGTCAAGGCGAAGAACGCCGCTGCTTCTGCTGCTGAAAACGGCGCGTCCGAGACCGCTGAGACTGGTAGCACCGCCGCCGCCGACGATGCCGCCGCCGTTCCCAGTGAGGATGTCAAGACTGAGGAATTGAAGACTGAGACTGAGTCAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005640 GO:0005737 GO:0005794 GO:0005829 GO:0005886 GO:0007049 GO:0007275 GO:0008150 GO:0009791 GO:0009987 GO:0012505 GO:0016020 GO:0016363 GO:0019867 GO:0022622 GO:0031090 GO:0031965 GO:0031967 GO:0031968 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0034399 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0070013 GO:0071944 GO:0090696 GO:0098588 GO:0098805 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WPP

Protein Analysis

169

Amino Acids

17.78

Weight (kDa)

4.49

Isoelectric Point (pI)

66.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WPP	PF13943	34 - 128	1.7e-34	WPP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47200 AT5G27940 AT5G43070
fragaria_vesca	FvH4_2g33670 FvH4_2g33670
malus_domestica	MD08G1091600.v1.1 MD15G1075600.v1.1
prunus_persica	Prupe.1G429000_v2.0.a1
pyrus_communis	pycom08g07390 pycom15g07080
rosa_chinensis	RchiOBHm_Chr6g0308881
rosa_laevigata	RLG00000010608
rosa_multiflora	Rmu_sc0004046.1_g000014
rosa_roxburghii	Rroxscaffold_7G00159820
rosa_rugosa	Rorug06G0368900 Rorug06G0369000
rosa_samantha	Rh6AG480500 Rh6BG490000 Rh6CG495400 Rh6DG480800
rosa_wichuraiana	Rw6G041880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	89, 194
AccBSI	CCGCTC	1 cut(s)	178
AccI	GTMKAC	1 cut(s)	141
AccII	CGCG	1 cut(s)	398
AclWI	GGATC	3 cut(s)	78, 261, 274
AcoI	YGGCCR	1 cut(s)	107
AcyI	GRCGYC	2 cut(s)	90, 246
AfiI	CCNNNNNNNGG	2 cut(s)	86, 261
AgsI	TTSAA	1 cut(s)	484
AjnI	CCWGG	1 cut(s)	21
AluBI	AGCT	1 cut(s)	84
AluI	AGCT	1 cut(s)	84
Alw21I	GWGCWC	1 cut(s)	20
Alw26I	GTCTC	6 cut(s)	149, 152, 287, 398, 407, 485
AlwI	GGATC	3 cut(s)	78, 261, 274
AlwNI	CAGNNNCTG	1 cut(s)	105
Ama87I	CYCGRG	1 cut(s)	347
AoxI	GGCC	2 cut(s)	107, 213
ApeKI	GCWGC	3 cut(s)	55, 374, 383
AspLEI	GCGC	3 cut(s)	92, 342, 398
AsuC2I	CCSGG	2 cut(s)	262, 298
AsuHPI	GGTGA	1 cut(s)	154
AvaI	CYCGRG	1 cut(s)	347
BamHI	GGATCC	1 cut(s)	266
BanI	GGYRCC	2 cut(s)	89, 194
BbsI	GAAGAC	1 cut(s)	491
Bbv12I	GWGCWC	1 cut(s)	20
BbvI	GCAGC	3 cut(s)	67, 361, 370
BceAI	ACGGC	5 cut(s)	14, 119, 208, 409, 434
BcgI	CGANNNNNNTGC	2 cut(s)	118, 152
BciT130I	CCWGG	1 cut(s)	23
BcnI	CCSGG	2 cut(s)	262, 298
BcoDI	GTCTC	6 cut(s)	149, 152, 287, 398, 407, 485
BfmI	CTRYAG	1 cut(s)	97
BfoI	RGCGCY	1 cut(s)	93
BglI	GCCNNNNNGGC	1 cut(s)	212
BglII	AGATCT	2 cut(s)	306, 315
Bme1390I	CCNGG	3 cut(s)	23, 262, 298
BmeT110I	CYCGRG	1 cut(s)	347
BmiI	GGNNCC	3 cut(s)	91, 196, 268
BmrFI	CCNGG	3 cut(s)	23, 262, 298
BmrI	ACTGGG	1 cut(s)	450
BmsI	GCATC	1 cut(s)	430
BmuI	ACTGGG	1 cut(s)	450
BpiI	GAAGAC	1 cut(s)	491
BpmI	CTGGAG	1 cut(s)	166
BpuMI	CCSGG	2 cut(s)	262, 298
BsaBI	GATNNNNATC	1 cut(s)	305
BsaHI	GRCGYC	2 cut(s)	90, 246
BsaI	GGTCTC	3 cut(s)	149, 287, 398
BsaJI	CCNNGG	4 cut(s)	21, 261, 276, 324
Bsc4I	CCNNNNNNNGG	2 cut(s)	86, 261
Bse1I	ACTGG	2 cut(s)	421, 456
Bse8I	GATNNNNATC	1 cut(s)	305
BseBI	CCWGG	1 cut(s)	23
BseDI	CCNNGG	4 cut(s)	21, 261, 276, 324
BseGI	GGATG	2 cut(s)	306, 469
BseJI	GATNNNNATC	1 cut(s)	305
BseLI	CCNNNNNNNGG	2 cut(s)	86, 261
BseMII	CTCAG	4 cut(s)	402, 465, 480, 486
BseNI	ACTGG	2 cut(s)	421, 456
BseRI	GAGGAG	1 cut(s)	236
BseXI	GCAGC	3 cut(s)	67, 361, 370
BseYI	CCCAGC	1 cut(s)	80
Bsh1236I	CGCG	1 cut(s)	398
Bsh1285I	CGRYCG	3 cut(s)	117, 121, 145
BshFI	GGCC	2 cut(s)	109, 215
BshNI	GGYRCC	2 cut(s)	89, 194
BsiEI	CGRYCG	3 cut(s)	117, 121, 145
BsiHKAI	GWGCWC	1 cut(s)	20
BsiHKCI	CYCGRG	1 cut(s)	347
BsiSI	CCGG	3 cut(s)	87, 261, 297
BslFI	GGGAC	1 cut(s)	211
BslI	CCNNNNNNNGG	2 cut(s)	86, 261
BsmAI	GTCTC	6 cut(s)	149, 152, 287, 398, 407, 485
BsmBI	CGTCTC	1 cut(s)	152
BsmFI	GGGAC	1 cut(s)	211
BsnI	GGCC	2 cut(s)	109, 215
Bso31I	GGTCTC	3 cut(s)	149, 287, 398
BsoBI	CYCGRG	1 cut(s)	347
Bsp1286I	GDGCHC	1 cut(s)	20
Bsp143I	GATC	5 cut(s)	70, 266, 306, 315, 330
BspANI	GGCC	2 cut(s)	109, 215
BspCNI	CTCAG	4 cut(s)	403, 466, 481, 487
BspFNI	CGCG	1 cut(s)	398
BspLI	GGNNCC	3 cut(s)	91, 196, 268
BspPI	GGATC	3 cut(s)	78, 261, 274
BspT107I	GGYRCC	2 cut(s)	89, 194
BspTNI	GGTCTC	3 cut(s)	149, 287, 398
BsrBI	CCGCTC	1 cut(s)	178
BsrI	ACTGG	2 cut(s)	421, 456
BssECI	CCNNGG	4 cut(s)	21, 261, 276, 324
BssMI	GATC	5 cut(s)	70, 266, 306, 315, 330
BssNI	GRCGYC	2 cut(s)	90, 246
BssT1I	CCWWGG	1 cut(s)	324
Bst2UI	CCWGG	1 cut(s)	23
Bst4CI	ACNGT	1 cut(s)	146
BstACI	GRCGYC	2 cut(s)	90, 246
BstC8I	GCNNGC	2 cut(s)	338, 344
BstDEI	CTNAG	4 cut(s)	411, 474, 489, 495
BstDSI	CCRYGG	1 cut(s)	276
BstF5I	GGATG	2 cut(s)	306, 469
BstFNI	CGCG	1 cut(s)	398
BstH2I	RGCGCY	1 cut(s)	93
BstHHI	GCGC	3 cut(s)	92, 342, 398
BstKTI	GATC	5 cut(s)	73, 269, 309, 318, 333
BstMAI	GTCTC	6 cut(s)	149, 152, 287, 398, 407, 485
BstMBI	GATC	5 cut(s)	70, 266, 306, 315, 330
BstMCI	CGRYCG	3 cut(s)	117, 121, 145
BstMWI	GCNNNNNNNGC	7 cut(s)	52, 212, 254, 368, 380, 383, 440
BstNI	CCWGG	1 cut(s)	23
BstNSI	RCATGY	1 cut(s)	346
BstSCI	CCNGG	3 cut(s)	21, 260, 296
BstSFI	CTRYAG	1 cut(s)	97
BstUI	CGCG	1 cut(s)	398
BstV1I	GCAGC	3 cut(s)	67, 361, 370
BstV2I	GAAGAC	1 cut(s)	491
BstX2I	RGATCY	3 cut(s)	266, 306, 315
BstYI	RGATCY	3 cut(s)	266, 306, 315
BsuRI	GGCC	2 cut(s)	109, 215
BtgI	CCRYGG	1 cut(s)	276
BtsCI	GGATG	2 cut(s)	306, 469
BtsIMutI	CAGTG	1 cut(s)	463
Cac8I	GCNNGC	2 cut(s)	338, 344
CaiI	CAGNNNCTG	1 cut(s)	105
CfoI	GCGC	3 cut(s)	92, 342, 398
CseI	GACGC	3 cut(s)	195, 254, 387
CviAII	CATG	1 cut(s)	343
CviJI	RGCY	8 cut(s)	11, 29, 46, 79, 84, 102, 109, 215
CviKI_1	RGCY	8 cut(s)	11, 29, 46, 79, 84, 102, 109, 215
DdeI	CTNAG	4 cut(s)	411, 474, 489, 495
DinI	GGCGCC	1 cut(s)	91
DpnI	GATC	5 cut(s)	72, 268, 308, 317, 332
DpnII	GATC	5 cut(s)	70, 266, 306, 315, 330
EaeI	YGGCCR	1 cut(s)	107
EciI	GGCGGA	2 cut(s)	193, 259
Eco130I	CCWWGG	1 cut(s)	324
Eco31I	GGTCTC	3 cut(s)	149, 287, 398
Eco88I	CYCGRG	1 cut(s)	347
EcoRII	CCWGG	1 cut(s)	21
EcoT14I	CCWWGG	1 cut(s)	324
EgeI	GGCGCC	1 cut(s)	91
EheI	GGCGCC	1 cut(s)	91
ErhI	CCWWGG	1 cut(s)	324
Esp3I	CGTCTC	1 cut(s)	152
FaeI	CATG	1 cut(s)	346
FaiI	YATR	1 cut(s)	344
FaqI	GGGAC	1 cut(s)	211
FatI	CATG	1 cut(s)	342
FauI	CCCGC	3 cut(s)	134, 183, 236
FblI	GTMKAC	1 cut(s)	141
FokI	GGATG	2 cut(s)	313, 476
GlaI	GCGC	3 cut(s)	91, 341, 397
GsaI	CCCAGC	1 cut(s)	84
GsuI	CTGGAG	1 cut(s)	166
HaeII	RGCGCY	1 cut(s)	93
HaeIII	GGCC	2 cut(s)	109, 215
HapII	CCGG	3 cut(s)	87, 261, 297
HgaI	GACGC	3 cut(s)	195, 254, 387
HhaI	GCGC	3 cut(s)	92, 342, 398
Hin1I	GRCGYC	2 cut(s)	90, 246
Hin1II	CATG	1 cut(s)	346
Hin6I	GCGC	3 cut(s)	90, 340, 396
HinP1I	GCGC	3 cut(s)	90, 340, 396
HincII	GTYRAC	2 cut(s)	142, 501
HindII	GTYRAC	2 cut(s)	142, 501
HinfI	GANTC	5 cut(s)	35, 62, 224, 234, 497
HpaII	CCGG	3 cut(s)	87, 261, 297
HphI	GGTGA	1 cut(s)	154
Hpy166II	GTNNAC	2 cut(s)	142, 501
Hpy188I	TCNGA	3 cut(s)	7, 75, 403
Hpy188III	TCNNGA	3 cut(s)	154, 183, 469
Hpy8I	GTNNAC	2 cut(s)	142, 501
Hpy99I	CGWCG	5 cut(s)	35, 140, 143, 212, 440
HpyAV	CCTTC	1 cut(s)	259
HpyCH4III	ACNGT	1 cut(s)	146
HpyCH4V	TGCA	1 cut(s)	313
HpyF10VI	GCNNNNNNNGC	7 cut(s)	52, 212, 254, 368, 380, 383, 440
HpyF3I	CTNAG	4 cut(s)	411, 474, 489, 495
Hsp92I	GRCGYC	2 cut(s)	90, 246
Hsp92II	CATG	1 cut(s)	346
HspAI	GCGC	3 cut(s)	90, 340, 396
KasI	GGCGCC	1 cut(s)	89
Kzo9I	GATC	5 cut(s)	70, 266, 306, 315, 330
LmnI	GCTCC	1 cut(s)	89
Lsp1109I	GCAGC	3 cut(s)	67, 361, 370
LweI	GCATC	1 cut(s)	430
MalI	GATC	5 cut(s)	72, 268, 308, 317, 332
MbiI	CCGCTC	1 cut(s)	178
MboI	GATC	5 cut(s)	70, 266, 306, 315, 330
MboII	GAAGA	3 cut(s)	316, 376, 496
MflI	RGATCY	3 cut(s)	266, 306, 315
MhlI	GDGCHC	1 cut(s)	20
MluCI	AATT	1 cut(s)	479
Mly113I	GGCGCC	1 cut(s)	90
MlyI	GAGTC	2 cut(s)	233, 506
MnlI	CCTC	9 cut(s)	113, 170, 181, 205, 214, 274, 343, 454, 469
MspA1I	CMGCKG	3 cut(s)	288, 374, 410
MspI	CCGG	3 cut(s)	87, 261, 297
MspR9I	CCNGG	3 cut(s)	23, 262, 298
MvaI	CCWGG	1 cut(s)	23
MvnI	CGCG	1 cut(s)	398
MwoI	GCNNNNNNNGC	7 cut(s)	52, 212, 254, 368, 380, 383, 440
NarI	GGCGCC	1 cut(s)	90
NciI	CCSGG	2 cut(s)	262, 298
NdeII	GATC	5 cut(s)	70, 266, 306, 315, 330
NlaIII	CATG	1 cut(s)	346
NlaIV	GGNNCC	3 cut(s)	91, 196, 268
NmeAIII	GCCGAG	1 cut(s)	37
NspI	RCATGY	1 cut(s)	346
PaeI	GCATGC	1 cut(s)	346
PaeR7I	CTCGAG	1 cut(s)	347
PcsI	WCGNNNNNNNCGW	3 cut(s)	138, 216, 399
PfeI	GAWTC	3 cut(s)	35, 62, 234
PflFI	GACNNNGTC	1 cut(s)	496
PleI	GAGTC	2 cut(s)	232, 505
PluTI	GGCGCC	1 cut(s)	93
PpsI	GAGTC	2 cut(s)	232, 505
Psp6I	CCWGG	1 cut(s)	21
PspFI	CCCAGC	1 cut(s)	80
PspGI	CCWGG	1 cut(s)	21
PspN4I	GGNNCC	3 cut(s)	91, 196, 268
PspXI	VCTCGAGB	1 cut(s)	347
PstNI	CAGNNNCTG	1 cut(s)	105
PsuI	RGATCY	3 cut(s)	266, 306, 315
PsyI	GACNNNGTC	1 cut(s)	496
SalI	GTCGAC	1 cut(s)	140
Sau3AI	GATC	5 cut(s)	70, 266, 306, 315, 330
SchI	GAGTC	2 cut(s)	233, 506
ScrFI	CCNGG	3 cut(s)	23, 262, 298
SduI	GDGCHC	1 cut(s)	20
SetI	ASST	5 cut(s)	86, 200, 285, 354, 506
SfaNI	GCATC	1 cut(s)	430
SfcI	CTRYAG	1 cut(s)	97
SfoI	GGCGCC	1 cut(s)	91
Sfr274I	CTCGAG	1 cut(s)	347
SlaI	CTCGAG	1 cut(s)	347
SmlI	CTYRAG	1 cut(s)	347
SmoI	CTYRAG	1 cut(s)	347
SphI	GCATGC	1 cut(s)	346
Sse9I	AATT	1 cut(s)	479
SspDI	GGCGCC	1 cut(s)	89
StyD4I	CCNGG	3 cut(s)	21, 260, 296
StyI	CCWWGG	1 cut(s)	324
TaaI	ACNGT	1 cut(s)	146
TaqI	TCGA	5 cut(s)	33, 141, 153, 237, 348
TaqII	GACCGA	1 cut(s)	131
TasI	AATT	1 cut(s)	479
TfiI	GAWTC	3 cut(s)	35, 62, 234
TscAI	CASTG	1 cut(s)	463
TseI	GCWGC	3 cut(s)	55, 374, 383
TspDTI	ATGAA	1 cut(s)	317
TspGWI	ACGGA	1 cut(s)	293
TspRI	CASTG	1 cut(s)	463
Tth111I	GACNNNGTC	1 cut(s)	496
XceI	RCATGY	1 cut(s)	346
XhoI	CTCGAG	1 cut(s)	347
XmiI	GTMKAC	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.