AT1G47380

phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0009593
Physical Location & Seq
Reverse (-)
17372371 .. 17376091
3721 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G47380.1

Sequence Viewer

Length: 1287 bp
ATGTCAACAAAGGGAGAACATCATACAGTTCCACTTTCTGTGTTGCTTAAACGTGAATCAGCTAATGAAAAGATAGACAATCCTGAACTTATACACGGCCAGCACAACCAAAGCAAGAAAGGAGAGGATTTTACTCTTGTTAAAACAGAGTGTCAACGTGTTATGGGCGATGGTGTTACCACCTTCTCCGTTTTTGGGCTTTTTGATGGACACAATGGTTCTGCAGCAGCTATCTACACTAAAGAGAACCTTTTGAATAATGTATTAGCTGCAATACCTTCTGATCTTAACAGAGATGAGTGGGTTGCTGCACTTCCTAGGGCTTTGGTTGCAGGATTTGTGAAAACTGATAAAGATTTCCAGGAAAGAGCAAGGACGTCTGGAACGACTGTAACTTTTGTCATAGTAGAAGGATGGGTGGTGAGTGTTGCATCTGTAGGTGACTCTCGTTGCATACTTGAGCCTGCTGAGGGCGGTGTCTATTATTTGTCTGCTGATCATCGGCTTGAAATAAACGAAGAAGAGCGAGATCGAGTCACTGCAAGTGGTGGTGAAGTTGGTCGGTTAAATACTGGTGGCGGTACTGAGATTGGTCCTCTGAGATGTTGGCCTGGTGGTCTGTGTCTCTCAAGATCCATTGGAGATCTGGATGTTGGCGAATACATTGTTCCAGTTCCTTATGTAAAGCAAGTCAAGTTGTCTTCAGCTGGTGGTCGACTGATCATCTCAAGTGATGGTGTGTGGGATGCAATATCTGCAGAAGAGGCTCTTGATTGTTGCCGGGGGTTGCCACCTGAATCTTCTGCGGAGCATATCGTTAAAGAAGCTGTGGGTAAAAAAGGTATTCGTGATGATACAACCTGTATTGTTGTTGATATATTGCCACTAGAAAAACCGGCTGCTTCCGTGCCGCCTCCAAAAAAGCAAGGAAAAGGAATGTTAAAGTCCATGTTCAAAAGGAAAACATCTGACTCCTCTTCTAATATCGAGAAAGAGTACGCAGAACCTGATGTAGTTGAAGAACTCTTTGAAGAGGGCTCTGCTATGCTATCAGAGAGATTAGACACAAAGTACCCGCTTTGCAATATGTTTAAGTTGTTCATGTGTGCTGTGTGTCAAGTAGAAGTGAAACCTGGAGAAGGTGTCTCGATCCATGCCGGGTCGGATAATTGCCGTAAGCTTCGTCCCTGGGATGGTCCATTCCTTTGTGCAAGTTGCCAAGATAAGAAAGACGCAATGGAAGGGAAAAGATCATCGGGAGATAGACATAGTAGTGAAAGCGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

428

Amino Acids

46.42

Weight (kDa)

5.28

Isoelectric Point (pI)

39.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 54 - 261 5.5e-29 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 380
AccI GTMKAC 1 cut(s) 715
AciI CCGC 5 cut(s) 474, 579, 806, 911, 1076
AclWI GGATC 2 cut(s) 627, 1144
AcoI YGGCCR 1 cut(s) 97
AcuI CTGAAG 1 cut(s) 687
AcyI GRCGYC 1 cut(s) 377
AfaI GTAC 3 cut(s) 583, 998, 1073
AfiI CCNNNNNNNGG 4 cut(s) 195, 470, 1139, 1193
AflIII ACRYGT 1 cut(s) 157
AgsI TTSAA 5 cut(s) 256, 509, 955, 1019, 1031
AjnI CCWGG 4 cut(s) 360, 610, 1132, 1187
AluBI AGCT 6 cut(s) 62, 230, 269, 707, 827, 1180
AluI AGCT 6 cut(s) 62, 230, 269, 707, 827, 1180
Alw26I GTCTC 2 cut(s) 629, 1150
AlwI GGATC 2 cut(s) 627, 1144
AlwNI CAGNNNCTG 1 cut(s) 1007
AoxI GGCC 2 cut(s) 97, 608
ApeKI GCWGC 5 cut(s) 224, 227, 269, 308, 899
AspA2I CCTAGG 1 cut(s) 317
AspS9I GGNCC 2 cut(s) 593, 1196
AsuC2I CCSGG 2 cut(s) 782, 1159
AsuHPI GGTGA 3 cut(s) 433, 452, 563
AvaII GGWCC 2 cut(s) 593, 1196
AvrII CCTAGG 1 cut(s) 317
BanII GRGCYC 1 cut(s) 1040
BbsI GAAGAC 1 cut(s) 693
BbvCI CCTCAGC 1 cut(s) 468
BbvI GCAGC 5 cut(s) 236, 239, 256, 295, 886
BccI CCATC 5 cut(s) 164, 200, 408, 728, 1187
BceAI ACGGC 2 cut(s) 112, 1158
BciT130I CCWGG 4 cut(s) 362, 612, 1134, 1189
BclI TGATCA 2 cut(s) 496, 720
BcnI CCSGG 2 cut(s) 782, 1159
BcoDI GTCTC 2 cut(s) 629, 1150
BfaI CTAG 3 cut(s) 318, 887, 1285
BfmI CTRYAG 3 cut(s) 222, 435, 756
BglII AGATCT 1 cut(s) 643
BisI GCNGC 6 cut(s) 225, 228, 270, 309, 900, 911
BlnI CCTAGG 1 cut(s) 317
BlsI GCNGC 6 cut(s) 226, 229, 271, 310, 901, 912
Bme1390I CCNGG 6 cut(s) 362, 612, 782, 1134, 1159, 1189
Bme18I GGWCC 2 cut(s) 593, 1196
BmgT120I GGNCC 2 cut(s) 593, 1196
BmrFI CCNGG 6 cut(s) 362, 612, 782, 1134, 1159, 1189
BmsI GCATC 2 cut(s) 440, 736
BpiI GAAGAC 1 cut(s) 693
BpmI CTGGAG 1 cut(s) 1155
Bpu10I CCTNAGC 1 cut(s) 468
BpuEI CTTGAG 3 cut(s) 479, 613, 712
BpuMI CCSGG 2 cut(s) 782, 1159
BsaHI GRCGYC 1 cut(s) 377
BsaJI CCNNGG 4 cut(s) 317, 781, 1187, 1188
BsaXI ACNNNNNCTCC 2 cut(s) 1128, 1158
Bsc4I CCNNNNNNNGG 4 cut(s) 195, 470, 1139, 1193
Bse118I RCCGGY 1 cut(s) 895
Bse1I ACTGG 2 cut(s) 577, 671
Bse3DI GCAATG 1 cut(s) 1242
BseBI CCWGG 4 cut(s) 362, 612, 1134, 1189
BseDI CCNNGG 4 cut(s) 317, 781, 1187, 1188
BseGI GGATG 4 cut(s) 419, 655, 751, 1198
BseLI CCNNNNNNNGG 4 cut(s) 195, 470, 1139, 1193
BseMI GCAATG 1 cut(s) 1242
BseMII CTCAG 3 cut(s) 459, 576, 590
BseNI ACTGG 2 cut(s) 577, 671
BseRI GAGGAG 1 cut(s) 964
BseXI GCAGC 5 cut(s) 236, 239, 256, 295, 886
BsgI GTGCAG 1 cut(s) 294
BshFI GGCC 2 cut(s) 99, 610
BsiSI CCGG 3 cut(s) 781, 896, 1158
BslFI GGGAC 1 cut(s) 1170
BslI CCNNNNNNNGG 4 cut(s) 195, 470, 1139, 1193
BsmAI GTCTC 2 cut(s) 629, 1150
BsmFI GGGAC 1 cut(s) 1170
BsnI GGCC 2 cut(s) 99, 610
Bsp1286I GDGCHC 1 cut(s) 1040
Bsp143I GATC 8 cut(s) 283, 496, 529, 632, 643, 720, 1149, 1250
BspACI CCGC 5 cut(s) 474, 579, 806, 911, 1076
BspANI GGCC 2 cut(s) 99, 610
BspCNI CTCAG 3 cut(s) 460, 577, 591
BspMAI CTGCAG 2 cut(s) 226, 760
BspPI GGATC 2 cut(s) 627, 1144
BspQI GCTCTTC 1 cut(s) 516
BsrDI GCAATG 1 cut(s) 1242
BsrFI RCCGGY 1 cut(s) 895
BsrI ACTGG 2 cut(s) 577, 671
BssAI RCCGGY 1 cut(s) 895
BssECI CCNNGG 4 cut(s) 317, 781, 1187, 1188
BssMI GATC 8 cut(s) 283, 496, 529, 632, 643, 720, 1149, 1250
BssNI GRCGYC 1 cut(s) 377
BssT1I CCWWGG 1 cut(s) 317
Bst2UI CCWGG 4 cut(s) 362, 612, 1134, 1189
Bst4CI ACNGT 2 cut(s) 28, 391
Bst6I CTCTTC 4 cut(s) 516, 756, 982, 1026
BstACI GRCGYC 1 cut(s) 377
BstAPI GCANNNNNTGC 1 cut(s) 755
BstC8I GCNNGC 2 cut(s) 101, 465
BstDEI CTNAG 3 cut(s) 468, 585, 599
BstENI CCTNNNNNAGG 1 cut(s) 1137
BstF5I GGATG 4 cut(s) 419, 655, 751, 1198
BstKTI GATC 8 cut(s) 286, 499, 532, 635, 646, 723, 1152, 1253
BstMAI GTCTC 2 cut(s) 629, 1150
BstMBI GATC 8 cut(s) 283, 496, 529, 632, 643, 720, 1149, 1250
BstMWI GCNNNNNNNGC 3 cut(s) 329, 755, 764
BstNI CCWGG 4 cut(s) 362, 612, 1134, 1189
BstSCI CCNGG 6 cut(s) 360, 610, 780, 1132, 1157, 1187
BstSFI CTRYAG 3 cut(s) 222, 435, 756
BstV1I GCAGC 5 cut(s) 236, 239, 256, 295, 886
BstV2I GAAGAC 1 cut(s) 693
BstX2I RGATCY 2 cut(s) 632, 643
BstYI RGATCY 2 cut(s) 632, 643
BsuRI GGCC 2 cut(s) 99, 610
BtgZI GCGATG 1 cut(s) 183
BtsCI GGATG 4 cut(s) 419, 655, 751, 1198
BtsI GCAGTG 1 cut(s) 537
BtsIMutI CAGTG 1 cut(s) 537
Cac8I GCNNGC 2 cut(s) 101, 465
CaiI CAGNNNCTG 1 cut(s) 1007
Cfr10I RCCGGY 1 cut(s) 895
Cfr13I GGNCC 2 cut(s) 593, 1196
CseI GACGC 1 cut(s) 1241
Csp6I GTAC 3 cut(s) 582, 997, 1072
CviAII CATG 3 cut(s) 949, 1102, 1154
CviQI GTAC 3 cut(s) 582, 997, 1072
DdeI CTNAG 3 cut(s) 468, 585, 599
DpnI GATC 8 cut(s) 285, 498, 531, 634, 645, 722, 1151, 1252
DpnII GATC 8 cut(s) 283, 496, 529, 632, 643, 720, 1149, 1250
EaeI YGGCCR 1 cut(s) 97
Eam1104I CTCTTC 4 cut(s) 516, 756, 982, 1026
EarI CTCTTC 4 cut(s) 516, 756, 982, 1026
Eco130I CCWWGG 1 cut(s) 317
Eco24I GRGCYC 1 cut(s) 1040
Eco47I GGWCC 2 cut(s) 593, 1196
Eco57I CTGAAG 1 cut(s) 687
EcoNI CCTNNNNNAGG 1 cut(s) 1137
EcoRII CCWGG 4 cut(s) 360, 610, 1132, 1187
EcoT14I CCWWGG 1 cut(s) 317
EcoT38I GRGCYC 1 cut(s) 1040
ErhI CCWWGG 1 cut(s) 317
FaeI CATG 3 cut(s) 952, 1105, 1157
FalI AAGNNNNNCTT 4 cut(s) 234, 266, 753, 785
FaqI GGGAC 1 cut(s) 1170
FatI CATG 3 cut(s) 948, 1101, 1153
FauI CCCGC 1 cut(s) 1083
FbaI TGATCA 2 cut(s) 496, 720
FblI GTMKAC 1 cut(s) 715
Fnu4HI GCNGC 6 cut(s) 225, 228, 270, 309, 900, 911
FokI GGATG 4 cut(s) 426, 662, 758, 1205
FriOI GRGCYC 1 cut(s) 1040
Fsp4HI GCNGC 6 cut(s) 225, 228, 270, 309, 900, 911
FspBI CTAG 3 cut(s) 318, 887, 1285
GluI GCNGC 6 cut(s) 225, 228, 270, 309, 900, 911
GsuI CTGGAG 1 cut(s) 1155
HaeIII GGCC 2 cut(s) 99, 610
HapII CCGG 3 cut(s) 781, 896, 1158
HgaI GACGC 1 cut(s) 1241
Hin1I GRCGYC 1 cut(s) 377
Hin1II CATG 3 cut(s) 952, 1105, 1157
HincII GTYRAC 3 cut(s) 6, 155, 716
HindII GTYRAC 3 cut(s) 6, 155, 716
HindIII AAGCTT 1 cut(s) 1178
HinfI GANTC 5 cut(s) 56, 443, 534, 797, 971
HpaII CCGG 3 cut(s) 781, 896, 1158
HphI GGTGA 3 cut(s) 433, 452, 563
Hpy166II GTNNAC 3 cut(s) 6, 155, 716
Hpy188I TCNGA 5 cut(s) 283, 600, 970, 1054, 1165
Hpy188III TCNNGA 9 cut(s) 83, 381, 630, 647, 770, 848, 988, 1147, 1257
Hpy8I GTNNAC 3 cut(s) 6, 155, 716
HpyAV CCTTC 5 cut(s) 193, 288, 404, 1133, 1235
HpyCH4III ACNGT 2 cut(s) 28, 391
HpyCH4IV ACGT 3 cut(s) 52, 157, 377
HpyF10VI GCNNNNNNNGC 3 cut(s) 329, 755, 764
HpyF3I CTNAG 3 cut(s) 468, 585, 599
HpySE526I ACGT 3 cut(s) 52, 157, 377
Hsp92I GRCGYC 1 cut(s) 377
Hsp92II CATG 3 cut(s) 952, 1105, 1157
Ksp22I TGATCA 2 cut(s) 496, 720
Kzo9I GATC 8 cut(s) 283, 496, 529, 632, 643, 720, 1149, 1250
LguI GCTCTTC 1 cut(s) 516
LmnI GCTCC 1 cut(s) 808
Lsp1109I GCAGC 5 cut(s) 236, 239, 256, 295, 886
LweI GCATC 2 cut(s) 440, 736
MaeI CTAG 3 cut(s) 318, 887, 1285
MaeII ACGT 3 cut(s) 52, 157, 377
MaeIII GTNAC 4 cut(s) 175, 391, 440, 535
MalI GATC 8 cut(s) 285, 498, 531, 634, 645, 722, 1151, 1252
MboI GATC 8 cut(s) 283, 496, 529, 632, 643, 720, 1149, 1250
MboII GAAGA 8 cut(s) 530, 533, 693, 773, 792, 969, 1031, 1043
MflI RGATCY 2 cut(s) 632, 643
MhlI GDGCHC 1 cut(s) 1040
MluCI AATT 1 cut(s) 1168
MlyI GAGTC 3 cut(s) 437, 543, 965
MmeI TCCRAC 1 cut(s) 1143
MnlI CCTC 7 cut(s) 118, 463, 606, 757, 924, 985, 1027
MseI TTAA 7 cut(s) 48, 141, 288, 566, 819, 941, 1092
MslI CAYNNNNRTG 1 cut(s) 1272
MspA1I CMGCKG 1 cut(s) 707
MspI CCGG 3 cut(s) 781, 896, 1158
MspR9I CCNGG 6 cut(s) 362, 612, 782, 1134, 1159, 1189
MvaI CCWGG 4 cut(s) 362, 612, 1134, 1189
MwoI GCNNNNNNNGC 3 cut(s) 329, 755, 764
NciI CCSGG 2 cut(s) 782, 1159
NdeII GATC 8 cut(s) 283, 496, 529, 632, 643, 720, 1149, 1250
NlaIII CATG 3 cut(s) 952, 1105, 1157
NmuCI GTSAC 2 cut(s) 440, 535
PasI CCCWGGG 1 cut(s) 1188
PciSI GCTCTTC 1 cut(s) 516
PcsI WCGNNNNNNNCGW 1 cut(s) 383
PfeI GAWTC 2 cut(s) 56, 797
PfoI TCCNGGA 1 cut(s) 360
PkrI GCNGC 6 cut(s) 226, 229, 271, 310, 901, 912
PleI GAGTC 3 cut(s) 437, 542, 965
PpsI GAGTC 3 cut(s) 437, 542, 965
Psp6I CCWGG 4 cut(s) 360, 610, 1132, 1187
PspGI CCWGG 4 cut(s) 360, 610, 1132, 1187
PspPI GGNCC 2 cut(s) 593, 1196
PstI CTGCAG 2 cut(s) 226, 760
PstNI CAGNNNCTG 1 cut(s) 1007
PsuI RGATCY 2 cut(s) 632, 643
PvuII CAGCTG 1 cut(s) 707
RsaI GTAC 3 cut(s) 583, 998, 1073
RsaNI GTAC 3 cut(s) 582, 997, 1072
RseI CAYNNNNRTG 1 cut(s) 1272
SalI GTCGAC 1 cut(s) 714
SapI GCTCTTC 1 cut(s) 516
SaqAI TTAA 7 cut(s) 48, 141, 288, 566, 819, 941, 1092
SatI GCNGC 6 cut(s) 225, 228, 270, 309, 900, 911
Sau3AI GATC 8 cut(s) 283, 496, 529, 632, 643, 720, 1149, 1250
Sau96I GGNCC 2 cut(s) 593, 1196
SchI GAGTC 3 cut(s) 437, 543, 965
ScrFI CCNGG 6 cut(s) 362, 612, 782, 1134, 1159, 1189
SduI GDGCHC 1 cut(s) 1040
SfaNI GCATC 2 cut(s) 440, 736
SfcI CTRYAG 3 cut(s) 222, 435, 756
SinI GGWCC 2 cut(s) 593, 1196
SmiMI CAYNNNNRTG 1 cut(s) 1272
SmlI CTYRAG 3 cut(s) 458, 628, 727
SmoI CTYRAG 3 cut(s) 458, 628, 727
Sse9I AATT 1 cut(s) 1168
SsiI CCGC 5 cut(s) 474, 579, 806, 911, 1076
SspMI CTAG 3 cut(s) 318, 887, 1285
StyD4I CCNGG 6 cut(s) 360, 610, 780, 1132, 1157, 1187
StyI CCWWGG 1 cut(s) 317
TaaI ACNGT 2 cut(s) 28, 391
TaiI ACGT 3 cut(s) 55, 160, 380
TaqI TCGA 4 cut(s) 532, 715, 987, 1148
TasI AATT 1 cut(s) 1168
TauI GCSGC 1 cut(s) 913
TfiI GAWTC 2 cut(s) 56, 797
Tru1I TTAA 7 cut(s) 48, 141, 288, 566, 819, 941, 1092
Tru9I TTAA 7 cut(s) 48, 141, 288, 566, 819, 941, 1092
TscAI CASTG 1 cut(s) 544
TseFI GTSAC 2 cut(s) 440, 535
TseI GCWGC 5 cut(s) 224, 227, 269, 308, 899
Tsp45I GTSAC 2 cut(s) 440, 535
TspDTI ATGAA 2 cut(s) 81, 1090
TspGWI ACGGA 2 cut(s) 178, 895
TspRI CASTG 1 cut(s) 544
VpaK11BI GGWCC 2 cut(s) 593, 1196
XagI CCTNNNNNAGG 1 cut(s) 1137
XcmI CCANNNNNNNNNTGG 1 cut(s) 643
XmaJI CCTAGG 1 cut(s) 317
XmiI GTMKAC 1 cut(s) 715
XspI CTAG 3 cut(s) 318, 887, 1285
ZraI GACGTC 1 cut(s) 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.