Rorug06G0360100

phosphatase 2c

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0009593
Physical Location & Seq
Reverse (-)
50875548 .. 50877039
1492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0360100.1

Sequence Viewer

Length: 534 bp
ATGGATCCTCCTCCTCCCACTCTTCCGATTCCTCCAACTCCTCCTCCCACTCTTCCTCCTCCTCCTCTGACTCCAAAATCGTTCGTGAAAAGCCTGAAAGGGAAAGACCTCCGTTACCATGTGCTGACAAGCATCAAAAGAAGGTTCCGACAGGCGCAGGATGAGGACGGCAGCCTTGATAAGCTTCCTCCTTTGCCAAACAGGAAACCTGATGATTTTCGAAGATATTATCCTGTCGACAAGGAGGCCTTGAACAGGGCATGGGATCAGCTCGCCGGTGCTGATGAAGACTTCATCAGGGAGACGGTGCACCGTCTCCGTTACAAGCTGAAAGGCACTGGCTACCTTCGAAGAGAGCATGGCTACATATTTCCTCACCCCTACAAGAATCGCTATAAGCCACCGCTTGCGAATGATTTTGATTGGATGGATCACGAAAGCGAGATAGAGCTAGGAACCTGCTGGGCAAGACGAGGACGGCCACGAGCTGCGGTGGATGCCAGACGGCAGTCTAGTGGGTTATACGGATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

177

Amino Acids

20.63

Weight (kDa)

9.71

Isoelectric Point (pI)

53.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 467
AccI GTMKAC 1 cut(s) 237
AciI CCGC 2 cut(s) 404, 491
AclWI GGATC 3 cut(s) 12, 273, 438
AcoI YGGCCR 1 cut(s) 479
AfiI CCNNNNNNNGG 1 cut(s) 255
AgsI TTSAA 1 cut(s) 253
AluBI AGCT 5 cut(s) 184, 271, 328, 451, 488
AluI AGCT 5 cut(s) 184, 271, 328, 451, 488
Alw21I GWGCWC 1 cut(s) 312
Alw26I GTCTC 2 cut(s) 296, 320
Alw44I GTGCAC 1 cut(s) 308
AlwI GGATC 3 cut(s) 12, 273, 438
AoxI GGCC 2 cut(s) 246, 479
ApaLI GTGCAC 1 cut(s) 308
ApeKI GCWGC 2 cut(s) 171, 488
AspLEI GCGC 1 cut(s) 157
AsuHPI GGTGA 1 cut(s) 368
AsuII TTCGAA 2 cut(s) 220, 349
BaeGI GKGCMC 1 cut(s) 312
BamHI GGATCC 1 cut(s) 4
BauI CACGAG 1 cut(s) 483
BbsI GAAGAC 1 cut(s) 294
Bbv12I GWGCWC 1 cut(s) 312
BbvI GCAGC 2 cut(s) 183, 475
BccI CCATC 1 cut(s) 421
BceAI ACGGC 3 cut(s) 184, 494, 521
BcoDI GTCTC 2 cut(s) 296, 320
BfaI CTAG 2 cut(s) 452, 513
BfuAI ACCTGC 1 cut(s) 467
BisI GCNGC 2 cut(s) 172, 489
BlsI GCNGC 2 cut(s) 173, 490
BmiI GGNNCC 3 cut(s) 6, 146, 457
BmsI GCATC 2 cut(s) 141, 487
BoxI GACNNNNGTC 1 cut(s) 508
BpiI GAAGAC 1 cut(s) 294
Bpu14I TTCGAA 2 cut(s) 220, 349
BsaXI ACNNNNNCTCC 4 cut(s) 28, 40, 58, 70
Bsc4I CCNNNNNNNGG 1 cut(s) 255
Bse118I RCCGGY 1 cut(s) 275
Bse1I ACTGG 1 cut(s) 343
BseGI GGATG 3 cut(s) 166, 432, 502
BseLI CCNNNNNNNGG 1 cut(s) 255
BseNI ACTGG 1 cut(s) 343
BseRI GAGGAG 5 cut(s) 30, 33, 48, 51, 54
BseSI GKGCMC 1 cut(s) 312
BseXI GCAGC 2 cut(s) 183, 475
BseYI CCCAGC 1 cut(s) 462
BshFI GGCC 2 cut(s) 248, 481
BsiHKAI GWGCWC 1 cut(s) 312
BsiSI CCGG 1 cut(s) 276
BslI CCNNNNNNNGG 1 cut(s) 255
BsmAI GTCTC 2 cut(s) 296, 320
BsmBI CGTCTC 2 cut(s) 296, 320
BsnI GGCC 2 cut(s) 248, 481
Bsp119I TTCGAA 2 cut(s) 220, 349
Bsp1286I GDGCHC 1 cut(s) 312
Bsp143I GATC 3 cut(s) 4, 265, 430
BspACI CCGC 2 cut(s) 404, 491
BspANI GGCC 2 cut(s) 248, 481
BspLI GGNNCC 3 cut(s) 6, 146, 457
BspMI ACCTGC 1 cut(s) 467
BspPI GGATC 3 cut(s) 12, 273, 438
BspT104I TTCGAA 2 cut(s) 220, 349
BsrFI RCCGGY 1 cut(s) 275
BsrI ACTGG 1 cut(s) 343
BssAI RCCGGY 1 cut(s) 275
BssMI GATC 3 cut(s) 4, 265, 430
BssSI CACGAG 1 cut(s) 483
Bst2BI CACGAG 1 cut(s) 483
Bst4CI ACNGT 2 cut(s) 307, 314
Bst6I CTCTTC 3 cut(s) 27, 57, 346
BstBI TTCGAA 2 cut(s) 220, 349
BstC8I GCNNGC 2 cut(s) 273, 408
BstENI CCTNNNNNAGG 1 cut(s) 253
BstF5I GGATG 3 cut(s) 166, 432, 502
BstHHI GCGC 1 cut(s) 157
BstKTI GATC 3 cut(s) 7, 268, 433
BstMAI GTCTC 2 cut(s) 296, 320
BstMBI GATC 3 cut(s) 4, 265, 430
BstMWI GCNNNNNNNGC 1 cut(s) 497
BstPAI GACNNNNGTC 1 cut(s) 508
BstSLI GKGCMC 1 cut(s) 312
BstV1I GCAGC 2 cut(s) 183, 475
BstV2I GAAGAC 1 cut(s) 294
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 2 cut(s) 248, 481
BtsCI GGATG 3 cut(s) 166, 432, 502
BtsIMutI CAGTG 1 cut(s) 336
BveI ACCTGC 1 cut(s) 467
Cac8I GCNNGC 2 cut(s) 273, 408
CfoI GCGC 1 cut(s) 157
Cfr10I RCCGGY 1 cut(s) 275
CviAII CATG 3 cut(s) 119, 261, 359
DpnI GATC 3 cut(s) 6, 267, 432
DpnII GATC 3 cut(s) 4, 265, 430
EaeI YGGCCR 1 cut(s) 479
Eam1104I CTCTTC 3 cut(s) 27, 57, 346
EarI CTCTTC 3 cut(s) 27, 57, 346
Eco147I AGGCCT 1 cut(s) 248
EcoNI CCTNNNNNAGG 1 cut(s) 253
Esp3I CGTCTC 2 cut(s) 296, 320
FaeI CATG 3 cut(s) 122, 264, 362
FaiI YATR 6 cut(s) 120, 262, 360, 368, 396, 523
FalI AAGNNNNNCTT 2 cut(s) 233, 265
FatI CATG 3 cut(s) 118, 260, 358
FblI GTMKAC 1 cut(s) 237
Fnu4HI GCNGC 2 cut(s) 172, 489
FokI GGATG 3 cut(s) 173, 439, 509
Fsp4HI GCNGC 2 cut(s) 172, 489
FspBI CTAG 2 cut(s) 452, 513
GlaI GCGC 1 cut(s) 156
GluI GCNGC 2 cut(s) 172, 489
GsaI CCCAGC 1 cut(s) 466
HaeIII GGCC 2 cut(s) 248, 481
HapII CCGG 1 cut(s) 276
HhaI GCGC 1 cut(s) 157
Hin1II CATG 3 cut(s) 122, 264, 362
Hin6I GCGC 1 cut(s) 155
HinP1I GCGC 1 cut(s) 155
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HindIII AAGCTT 1 cut(s) 182
HinfI GANTC 3 cut(s) 28, 70, 388
HpaII CCGG 1 cut(s) 276
HphI GGTGA 1 cut(s) 368
Hpy166II GTNNAC 2 cut(s) 238, 310
Hpy188I TCNGA 3 cut(s) 27, 69, 149
Hpy188III TCNNGA 2 cut(s) 85, 434
Hpy8I GTNNAC 2 cut(s) 238, 310
HpyAV CCTTC 2 cut(s) 135, 356
HpyCH4III ACNGT 2 cut(s) 307, 314
HpyCH4V TGCA 1 cut(s) 310
HpyF10VI GCNNNNNNNGC 1 cut(s) 497
Hsp92II CATG 3 cut(s) 122, 264, 362
HspAI GCGC 1 cut(s) 155
Kzo9I GATC 3 cut(s) 4, 265, 430
Lsp1109I GCAGC 2 cut(s) 183, 475
LweI GCATC 2 cut(s) 141, 487
MaeI CTAG 2 cut(s) 452, 513
MaeIII GTNAC 2 cut(s) 113, 320
MalI GATC 3 cut(s) 6, 267, 432
MboI GATC 3 cut(s) 4, 265, 430
MboII GAAGA 5 cut(s) 14, 44, 234, 299, 363
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 1 cut(s) 312
MlyI GAGTC 1 cut(s) 64
MmeI TCCRAC 2 cut(s) 59, 172
MspI CCGG 1 cut(s) 276
MwoI GCNNNNNNNGC 1 cut(s) 497
NdeII GATC 3 cut(s) 4, 265, 430
NlaIII CATG 3 cut(s) 122, 264, 362
NlaIV GGNNCC 3 cut(s) 6, 146, 457
NspV TTCGAA 2 cut(s) 220, 349
PceI AGGCCT 1 cut(s) 248
PfeI GAWTC 2 cut(s) 28, 388
PkrI GCNGC 2 cut(s) 173, 490
PleI GAGTC 1 cut(s) 64
PpsI GAGTC 1 cut(s) 64
PshAI GACNNNNGTC 1 cut(s) 508
PspFI CCCAGC 1 cut(s) 462
PspN4I GGNNCC 3 cut(s) 6, 146, 457
PsuI RGATCY 1 cut(s) 4
SalI GTCGAC 1 cut(s) 236
SatI GCNGC 2 cut(s) 172, 489
Sau3AI GATC 3 cut(s) 4, 265, 430
SchI GAGTC 1 cut(s) 64
SduI GDGCHC 1 cut(s) 312
SfaNI GCATC 2 cut(s) 141, 487
SfuI TTCGAA 2 cut(s) 220, 349
SgrAI CRCCGGYG 1 cut(s) 275
SseBI AGGCCT 1 cut(s) 248
SsiI CCGC 2 cut(s) 404, 491
SspMI CTAG 2 cut(s) 452, 513
StuI AGGCCT 1 cut(s) 248
TaaI ACNGT 2 cut(s) 307, 314
TaqI TCGA 3 cut(s) 220, 237, 349
TfiI GAWTC 2 cut(s) 28, 388
TscAI CASTG 1 cut(s) 343
TseI GCWGC 2 cut(s) 171, 488
TspDTI ATGAA 2 cut(s) 283, 300
TspGWI ACGGA 2 cut(s) 101, 308
TspRI CASTG 1 cut(s) 343
VneI GTGCAC 1 cut(s) 308
XagI CCTNNNNNAGG 1 cut(s) 253
XmiI GTMKAC 1 cut(s) 237
XspI CTAG 2 cut(s) 452, 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.