FvH4_2g34570

phosphatase 2c

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0009593
Physical Location & Seq
Reverse (-)
25643358 .. 25648748
5391 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g34570.t2

Sequence Viewer

Length: 1299 bp
ATGTCCAACAACAGGAGTGATAATCATCAGACGGTCCCGCTTTCGGTGCTGCTGAAGCGAGAATTGGCCAATGAGAAGATTGAGAGGCCCGAGATTATATATGGTCAGGCTAGTCAGAGCAAGAAAGGGGAGGATTTCACTATGGTGAAGACGGATTGTCAAAGAGTTGTGGGGGATGGAGTTTCTACCTATTCAGTTTTTGCGCTATTTGATGGGCATAACGGGTCTGCAGCCGCTATATACTCCAAGGAAAATCTTCTGAGCAATATTTTAGCTGCTATTCCTTCAGATCTTAACAGAGATGAATGGATTGCAGCTTTGCCAAGGTCATTGGTAGCAGGCTTTGTCAAGACAGACAAAGAGTTCCAAGAGAAAGCTCAAACGTCAGGAACCACTGTCACCTTTGTAATTATAGAGGGATGGGTAATATCTGTTGCATCCGTTGGTGATTCTCGTTGCATTGTTGAACCTGCCGAAGGTGGAGTTTATTATTTATCAGCAGATCATAGGCTTGAATGCAGCGAGGACGAGAGACTGCGTATCACTTCAAGTGGTGGTGAGGTTGGTAGGCTTAATACTGGCGGCGGGGCAGAGATTGGTCCATTGAGGTGTTGGCCTGGTGGCTTGTGCCTTTCGAGATCCATTGGTGATATGGATGTGGGAGAGTTCATTGTTCCTGTTCCTTATGTAAAGCAAATGAAGTTGTCTACTGCTGGTGGTAGGCTGATCATATCAAGTGATGGTGTATGGGATGCTCTGTCTGCAGAAGAAGCTCTTGACTGTTGTCGTGGGATGCCTCCAGATGCTGCAGCTGCCCAAATAGTCAAGGATGCTGTTGGGGCAAAGGGACTGCGGGATGATACAACCTGTATTGTGATTGACATTTTACCACAGGAGAAGCCAGCAGCTCCATTGGCGCAACCAAAGAGGCAAGGAGGAAAAGGAGTTTTTAAGTCCATGTTTAAGAAAAAGCCTTGTGAATCATCTTCTAGTGTTGAACAAGAATATATTGAACCAGACACGGTGGAGGAAATATATGAGGAAGGTTCTGCTTCTCTTTCCGAAAGGTTAGATTCAAAGTACCCACTCTGCAACATGTTTAAGCTCTTTATGTGTGCTGTTTGTCAAGTTGAAATCAAACCAGGAGAGGGTATTTCAATACATTCCGGCTCAACCTCTAACCCAGAAAAATTGCGACCTTGGGATGGCCCCTTCCTTTGCACTAGTTGTCAAGAGAAGAGAGAGGCTATGGAAGGGAAAAGACCATCAGGAAATCGACGTGACAGCGATAGTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

433

Amino Acids

46.82

Weight (kDa)

5.02

Isoelectric Point (pI)

46.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 59 - 277 3.6e-29 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 478
AccI GTMKAC 1 cut(s) 707
AciI CCGC 5 cut(s) 38, 234, 582, 585, 853
AclWI GGATC 1 cut(s) 633
AcoI YGGCCR 1 cut(s) 66
AcuI CTGAAG 2 cut(s) 74, 270
AfaI GTAC 1 cut(s) 1082
AfiI CCNNNNNNNGG 5 cut(s) 12, 43, 476, 1148, 1205
AflIII ACRYGT 1 cut(s) 1095
AgsI TTSAA 8 cut(s) 467, 515, 549, 998, 1013, 1077, 1133, 1158
AhdI GACNNNNNGTC 1 cut(s) 156
AhlI ACTAGT 1 cut(s) 1223
AjiI CACGTC 1 cut(s) 1280
AjnI CCWGG 2 cut(s) 616, 1141
AjuI GAANNNNNNNTTGG 2 cut(s) 47, 79
AleI CACNNNNGTG 1 cut(s) 143
AluBI AGCT 7 cut(s) 275, 317, 377, 773, 812, 908, 1105
AluI AGCT 7 cut(s) 275, 317, 377, 773, 812, 908, 1105
Alw26I GTCTC 1 cut(s) 526
AlwI GGATC 1 cut(s) 633
AlwNI CAGNNNCTG 1 cut(s) 806
Ama87I CYCGRG 1 cut(s) 89
AoxI GGCC 4 cut(s) 66, 86, 614, 1207
ApeKI GCWGC 9 cut(s) 49, 230, 275, 314, 519, 806, 809, 812, 905
Asp700I GAANNNNTTC 1 cut(s) 255
AspLEI GCGC 2 cut(s) 205, 919
AspS9I GGNCC 4 cut(s) 34, 87, 599, 1208
AsuHPI GGTGA 5 cut(s) 157, 391, 458, 569, 659
AvaI CYCGRG 1 cut(s) 89
AvaII GGWCC 2 cut(s) 34, 599
BalI TGGCCA 1 cut(s) 68
BbsI GAAGAC 1 cut(s) 155
BbvI GCAGC 9 cut(s) 36, 242, 262, 326, 531, 793, 799, 821, 917
BccI CCATC 6 cut(s) 170, 206, 414, 734, 1199, 1273
BciT130I CCWGG 2 cut(s) 618, 1143
BclI TGATCA 1 cut(s) 726
BcoDI GTCTC 1 cut(s) 526
BcuI ACTAGT 1 cut(s) 1223
BfaI CTAG 3 cut(s) 111, 990, 1224
BfmI CTRYAG 3 cut(s) 228, 762, 807
BfuAI ACCTGC 1 cut(s) 478
BglII AGATCT 1 cut(s) 289
Bme1390I CCNGG 2 cut(s) 618, 1143
Bme18I GGWCC 2 cut(s) 34, 599
BmeRI GACNNNNNGTC 1 cut(s) 156
BmeT110I CYCGRG 1 cut(s) 89
BmgBI CACGTC 1 cut(s) 1280
BmgT120I GGNCC 4 cut(s) 34, 87, 599, 1208
BmiI GGNNCC 3 cut(s) 36, 391, 1210
BmrFI CCNGG 2 cut(s) 618, 1143
BmsI GCATC 5 cut(s) 446, 742, 783, 793, 820
BoxI GACNNNNGTC 1 cut(s) 783
BpiI GAAGAC 1 cut(s) 155
BpmI CTGGAG 1 cut(s) 783
BsaBI GATNNNNATC 1 cut(s) 24
BsaJI CCNNGG 3 cut(s) 246, 323, 1199
Bsc4I CCNNNNNNNGG 5 cut(s) 12, 43, 476, 1148, 1205
Bse1I ACTGG 1 cut(s) 583
Bse8I GATNNNNATC 1 cut(s) 24
BseBI CCWGG 2 cut(s) 618, 1143
BseDI CCNNGG 3 cut(s) 246, 323, 1199
BseGI GGATG 9 cut(s) 181, 425, 437, 661, 757, 798, 835, 862, 1210
BseJI GATNNNNATC 1 cut(s) 24
BseLI CCNNNNNNNGG 5 cut(s) 12, 43, 476, 1148, 1205
BseMII CTCAG 1 cut(s) 251
BseNI ACTGG 1 cut(s) 583
BseXI GCAGC 9 cut(s) 36, 242, 262, 326, 531, 793, 799, 821, 917
BshFI GGCC 4 cut(s) 68, 88, 616, 1209
BsiHKCI CYCGRG 1 cut(s) 89
BsiSI CCGG 1 cut(s) 1167
BslFI GGGAC 2 cut(s) 20, 861
BslI CCNNNNNNNGG 5 cut(s) 12, 43, 476, 1148, 1205
BsmAI GTCTC 1 cut(s) 526
BsmFI GGGAC 2 cut(s) 20, 861
BsmI GAATGC 1 cut(s) 521
BsnI GGCC 4 cut(s) 68, 88, 616, 1209
BsoBI CYCGRG 1 cut(s) 89
Bsp143I GATC 4 cut(s) 289, 502, 638, 726
BspACI CCGC 5 cut(s) 38, 234, 582, 585, 853
BspANI GGCC 4 cut(s) 68, 88, 616, 1209
BspCNI CTCAG 1 cut(s) 252
BspLI GGNNCC 3 cut(s) 36, 391, 1210
BspMAI CTGCAG 3 cut(s) 232, 766, 811
BspMI ACCTGC 1 cut(s) 478
BspPI GGATC 1 cut(s) 633
BsrI ACTGG 1 cut(s) 583
BssECI CCNNGG 3 cut(s) 246, 323, 1199
BssMI GATC 4 cut(s) 289, 502, 638, 726
BssT1I CCWWGG 3 cut(s) 246, 323, 1199
Bst2UI CCWGG 2 cut(s) 618, 1143
Bst4CI ACNGT 4 cut(s) 34, 397, 782, 1024
Bst6I CTCTTC 1 cut(s) 1232
BstC8I GCNNGC 2 cut(s) 340, 903
BstDEI CTNAG 1 cut(s) 260
BstENI CCTNNNNNAGG 1 cut(s) 474
BstF5I GGATG 9 cut(s) 181, 425, 437, 661, 757, 798, 835, 862, 1210
BstHHI GCGC 2 cut(s) 205, 919
BstKTI GATC 4 cut(s) 292, 505, 641, 729
BstMAI GTCTC 1 cut(s) 526
BstMBI GATC 4 cut(s) 289, 502, 638, 726
BstMWI GCNNNNNNNGC 7 cut(s) 46, 55, 761, 770, 812, 839, 914
BstNI CCWGG 2 cut(s) 618, 1143
BstNSI RCATGY 1 cut(s) 1099
BstPAI GACNNNNGTC 1 cut(s) 783
BstSCI CCNGG 2 cut(s) 616, 1141
BstSFI CTRYAG 3 cut(s) 228, 762, 807
BstV1I GCAGC 9 cut(s) 36, 242, 262, 326, 531, 793, 799, 821, 917
BstV2I GAAGAC 1 cut(s) 155
BstX2I RGATCY 2 cut(s) 289, 638
BstYI RGATCY 2 cut(s) 289, 638
BsuRI GGCC 4 cut(s) 68, 88, 616, 1209
BtrI CACGTC 1 cut(s) 1280
BtsCI GGATG 9 cut(s) 181, 425, 437, 661, 757, 798, 835, 862, 1210
BtsIMutI CAGTG 1 cut(s) 393
BveI ACCTGC 1 cut(s) 478
Cac8I GCNNGC 2 cut(s) 340, 903
CaiI CAGNNNCTG 1 cut(s) 806
CfoI GCGC 2 cut(s) 205, 919
Cfr13I GGNCC 4 cut(s) 34, 87, 599, 1208
Csp6I GTAC 1 cut(s) 1081
CviAII CATG 2 cut(s) 958, 1096
CviQI GTAC 1 cut(s) 1081
DdeI CTNAG 1 cut(s) 260
DpnI GATC 4 cut(s) 291, 504, 640, 728
DpnII GATC 4 cut(s) 289, 502, 638, 726
DriI GACNNNNNGTC 1 cut(s) 156
EaeI YGGCCR 1 cut(s) 66
Eam1104I CTCTTC 1 cut(s) 1232
Eam1105I GACNNNNNGTC 1 cut(s) 156
EarI CTCTTC 1 cut(s) 1232
Eco130I CCWWGG 3 cut(s) 246, 323, 1199
Eco47I GGWCC 2 cut(s) 34, 599
Eco57I CTGAAG 2 cut(s) 74, 270
Eco88I CYCGRG 1 cut(s) 89
EcoNI CCTNNNNNAGG 1 cut(s) 474
EcoRII CCWGG 2 cut(s) 616, 1141
EcoT14I CCWWGG 3 cut(s) 246, 323, 1199
ErhI CCWWGG 3 cut(s) 246, 323, 1199
FaeI CATG 2 cut(s) 961, 1099
FalI AAGNNNNNCTT 2 cut(s) 759, 791
FaqI GGGAC 2 cut(s) 20, 861
FatI CATG 2 cut(s) 957, 1095
FauI CCCGC 3 cut(s) 45, 578, 846
FbaI TGATCA 1 cut(s) 726
FblI GTMKAC 1 cut(s) 707
FokI GGATG 9 cut(s) 188, 424, 432, 668, 764, 805, 842, 869, 1217
FspBI CTAG 3 cut(s) 111, 990, 1224
GlaI GCGC 2 cut(s) 204, 918
GsuI CTGGAG 1 cut(s) 783
HaeIII GGCC 4 cut(s) 68, 88, 616, 1209
HapII CCGG 1 cut(s) 1167
HhaI GCGC 2 cut(s) 205, 919
Hin1II CATG 2 cut(s) 961, 1099
Hin6I GCGC 2 cut(s) 203, 917
HinP1I GCGC 2 cut(s) 203, 917
HinfI GANTC 3 cut(s) 449, 980, 1073
HpaII CCGG 1 cut(s) 1167
HphI GGTGA 5 cut(s) 157, 391, 458, 569, 659
Hpy166II GTNNAC 1 cut(s) 708
Hpy188I TCNGA 5 cut(s) 30, 117, 261, 289, 1063
Hpy188III TCNNGA 7 cut(s) 349, 387, 636, 776, 800, 1232, 1269
Hpy8I GTNNAC 1 cut(s) 708
Hpy99I CGWCG 1 cut(s) 1281
HpyAV CCTTC 5 cut(s) 294, 470, 1037, 1222, 1247
HpyCH4III ACNGT 4 cut(s) 34, 397, 782, 1024
HpyCH4IV ACGT 2 cut(s) 383, 1279
HpyCH4V TGCA 9 cut(s) 230, 314, 437, 459, 519, 764, 809, 1092, 1221
HpyF10VI GCNNNNNNNGC 7 cut(s) 46, 55, 761, 770, 812, 839, 914
HpyF3I CTNAG 1 cut(s) 260
HpySE526I ACGT 2 cut(s) 383, 1279
Hsp92II CATG 2 cut(s) 961, 1099
HspAI GCGC 2 cut(s) 203, 917
Ksp22I TGATCA 1 cut(s) 726
Kzo9I GATC 4 cut(s) 289, 502, 638, 726
LmnI GCTCC 1 cut(s) 913
Lsp1109I GCAGC 9 cut(s) 36, 242, 262, 326, 531, 793, 799, 821, 917
LweI GCATC 5 cut(s) 446, 742, 783, 793, 820
MaeI CTAG 3 cut(s) 111, 990, 1224
MaeII ACGT 2 cut(s) 383, 1279
MaeIII GTNAC 2 cut(s) 397, 1280
MalI GATC 4 cut(s) 291, 504, 640, 728
MboI GATC 4 cut(s) 289, 502, 638, 726
MboII GAAGA 6 cut(s) 88, 160, 248, 779, 978, 1249
MflI RGATCY 2 cut(s) 289, 638
MlsI TGGCCA 1 cut(s) 68
MluCI AATT 3 cut(s) 62, 408, 1190
MluNI TGGCCA 1 cut(s) 68
MmeI TCCRAC 1 cut(s) 30
Mox20I TGGCCA 1 cut(s) 68
MroXI GAANNNNTTC 1 cut(s) 255
MscI TGGCCA 1 cut(s) 68
MseI TTAA 5 cut(s) 294, 573, 951, 963, 1101
MslI CAYNNNNRTG 2 cut(s) 143, 607
Msp20I TGGCCA 1 cut(s) 68
MspA1I CMGCKG 1 cut(s) 812
MspI CCGG 1 cut(s) 1167
MspR9I CCNGG 2 cut(s) 618, 1143
Mva1269I GAATGC 1 cut(s) 521
MvaI CCWGG 2 cut(s) 618, 1143
MwoI GCNNNNNNNGC 7 cut(s) 46, 55, 761, 770, 812, 839, 914
NdeII GATC 4 cut(s) 289, 502, 638, 726
NlaIII CATG 2 cut(s) 961, 1099
NlaIV GGNNCC 3 cut(s) 36, 391, 1210
NmuCI GTSAC 2 cut(s) 397, 1280
NspI RCATGY 1 cut(s) 1099
OliI CACNNNNGTG 1 cut(s) 143
PciI ACATGT 1 cut(s) 1095
PctI GAATGC 1 cut(s) 521
PdmI GAANNNNTTC 1 cut(s) 255
PfeI GAWTC 3 cut(s) 449, 980, 1073
PscI ACATGT 1 cut(s) 1095
PshAI GACNNNNGTC 1 cut(s) 783
Psp6I CCWGG 2 cut(s) 616, 1141
PspGI CCWGG 2 cut(s) 616, 1141
PspN4I GGNNCC 3 cut(s) 36, 391, 1210
PspPI GGNCC 4 cut(s) 34, 87, 599, 1208
PstI CTGCAG 3 cut(s) 232, 766, 811
PstNI CAGNNNCTG 1 cut(s) 806
PsuI RGATCY 2 cut(s) 289, 638
PvuII CAGCTG 1 cut(s) 812
RsaI GTAC 1 cut(s) 1082
RsaNI GTAC 1 cut(s) 1081
RseI CAYNNNNRTG 2 cut(s) 143, 607
SaqAI TTAA 5 cut(s) 294, 573, 951, 963, 1101
Sau3AI GATC 4 cut(s) 289, 502, 638, 726
Sau96I GGNCC 4 cut(s) 34, 87, 599, 1208
ScrFI CCNGG 2 cut(s) 618, 1143
SfaNI GCATC 5 cut(s) 446, 742, 783, 793, 820
SfcI CTRYAG 3 cut(s) 228, 762, 807
SinI GGWCC 2 cut(s) 34, 599
SmiMI CAYNNNNRTG 2 cut(s) 143, 607
SpeI ACTAGT 1 cut(s) 1223
Sse9I AATT 3 cut(s) 62, 408, 1190
SsiI CCGC 5 cut(s) 38, 234, 582, 585, 853
SspI AATATT 1 cut(s) 268
SspMI CTAG 3 cut(s) 111, 990, 1224
StyD4I CCNGG 2 cut(s) 616, 1141
StyI CCWWGG 3 cut(s) 246, 323, 1199
TaaI ACNGT 4 cut(s) 34, 397, 782, 1024
TaiI ACGT 2 cut(s) 386, 1282
TaqI TCGA 2 cut(s) 635, 1276
TasI AATT 3 cut(s) 62, 408, 1190
TauI GCSGC 2 cut(s) 236, 585
TfiI GAWTC 3 cut(s) 449, 980, 1073
Tru1I TTAA 5 cut(s) 294, 573, 951, 963, 1101
Tru9I TTAA 5 cut(s) 294, 573, 951, 963, 1101
TscAI CASTG 1 cut(s) 400
TseFI GTSAC 2 cut(s) 397, 1280
TseI GCWGC 9 cut(s) 49, 230, 275, 314, 519, 806, 809, 812, 905
Tsp45I GTSAC 2 cut(s) 397, 1280
TspDTI ATGAA 3 cut(s) 318, 658, 713
TspGWI ACGGA 2 cut(s) 167, 430
TspRI CASTG 1 cut(s) 400
VpaK11BI GGWCC 2 cut(s) 34, 599
XagI CCTNNNNNAGG 1 cut(s) 474
XceI RCATGY 1 cut(s) 1099
XcmI CCANNNNNNNNNTGG 2 cut(s) 609, 649
XmiI GTMKAC 1 cut(s) 707
XmnI GAANNNNTTC 1 cut(s) 255
XspI CTAG 3 cut(s) 111, 990, 1224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.