Rorug06G0360200

phosphatase 2c

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0009593
Physical Location & Seq
Reverse (-)
50879944 .. 50881260
1317 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0360200.1

Sequence Viewer

Length: 786 bp
ATGGGCTCCAAACCTCTCAACTCCAACGCCCAGCCATTTTTTGCAAGCCGTTTCCACAACTTCCAGACCTATGTGTGCTACAACTACCCAATCTATGCTGATCATCATCTGCATCCAAATCTTTTTCATCATCAATTAAACCCAACCGCAGTGGTGGAGTTTCCTAGAGTTCCGATGAGACGACTTCGAAAAAGGAACGGTCGAAAAAGGAACATTGGTGCTTTGAGTCGTGGTGCTACTGGGGAGGGAGGTGTAATTCCATTTCCTTCAGGTCCGGATCAGCAGCAAAATGGGTCGTCAGCTACTACAACTATCATGATAAAGAATATCCCAAACCAGTTCAGGAGGAGTGATCTACTGGGTATATTGATGGAGCATTGCTTGGTAGAAAACCTAGATGCTGTGGTGCGGTCTGATCCTAACAAGTCCGAGTTTGATTTTGTGTATTTGCCCATGGATTTCAACAAAAATAGGGGTAGCAATTTGGGCTACGCATTTGTAAACTTCACCGGTGCAATTGGGGCACAAAGATTCTACCAGCGTTACCACAATTTCGAGTGGGATGTTGAACAGAACAAAAAAACATGTGCAATTACCTGCGCTAAAATTCAGGGAAAGAAAGCACTAATCGGGAATTTTAGGCACAAAGTATTCCGGTGCGAATTTGACGAGTACTTGCCTGTGGTTGTCGCACCTCCATGCGATGGTGTGTCGCCTCCGAAGCTCACACTTCTTGGAAAGCTTAGGGGTGCACCCAAGTACCCCACCAGTAGATTAAGAATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

261

Amino Acids

29.66

Weight (kDa)

9.8

Isoelectric Point (pI)

43.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_2 PF04059 103 - 214 4.4e-17 RNA recognition motif 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 605
AccB7I CCANNNNNTGG 1 cut(s) 704
AccIII TCCGGA 1 cut(s) 274
AciI CCGC 2 cut(s) 147, 409
AclWI GGATC 2 cut(s) 285, 410
AcsI RAATTY 3 cut(s) 606, 634, 662
AcuI CTGAAG 1 cut(s) 252
AfaI GTAC 2 cut(s) 674, 761
AfiI CCNNNNNNNGG 1 cut(s) 704
AflIII ACRYGT 1 cut(s) 584
AgeI ACCGGT 1 cut(s) 509
AgsI TTSAA 2 cut(s) 463, 569
AluBI AGCT 3 cut(s) 302, 724, 742
AluI AGCT 3 cut(s) 302, 724, 742
Alw21I GWGCWC 1 cut(s) 754
Alw26I GTCTC 1 cut(s) 172
Alw44I GTGCAC 1 cut(s) 750
AlwI GGATC 2 cut(s) 285, 410
Aor13HI TCCGGA 1 cut(s) 274
ApaLI GTGCAC 1 cut(s) 750
ApeKI GCWGC 1 cut(s) 283
ApoI RAATTY 3 cut(s) 606, 634, 662
AsiGI ACCGGT 1 cut(s) 509
AspLEI GCGC 1 cut(s) 602
AspS9I GGNCC 1 cut(s) 272
AsuHPI GGTGA 1 cut(s) 499
AsuII TTCGAA 1 cut(s) 187
AvaII GGWCC 1 cut(s) 272
BaeGI GKGCMC 2 cut(s) 526, 754
BaeI ACNNNNGTAYC 2 cut(s) 743, 776
BanII GRGCYC 1 cut(s) 8
Bbv12I GWGCWC 1 cut(s) 754
BbvI GCAGC 1 cut(s) 295
BccI CCATC 2 cut(s) 364, 698
BceAI ACGGC 1 cut(s) 33
BclI TGATCA 1 cut(s) 100
BcoDI GTCTC 1 cut(s) 172
BfaI CTAG 2 cut(s) 165, 395
BfuAI ACCTGC 1 cut(s) 605
BisI GCNGC 1 cut(s) 284
BlsI GCNGC 1 cut(s) 285
BmcAI AGTACT 1 cut(s) 674
Bme18I GGWCC 1 cut(s) 272
BmgT120I GGNCC 1 cut(s) 272
BmiI GGNNCC 1 cut(s) 7
BmrI ACTGGG 2 cut(s) 249, 368
BmsI GCATC 2 cut(s) 121, 388
BmuI ACTGGG 2 cut(s) 249, 368
Bpu10I CCTNAGC 1 cut(s) 743
Bpu14I TTCGAA 1 cut(s) 187
BsaBI GATNNNNATC 1 cut(s) 105
BsaJI CCNNGG 1 cut(s) 453
BsaWI WCCGGW 3 cut(s) 274, 509, 654
Bsc4I CCNNNNNNNGG 1 cut(s) 704
Bse118I RCCGGY 1 cut(s) 509
Bse1I ACTGG 4 cut(s) 244, 337, 363, 768
Bse3DI GCAATG 1 cut(s) 376
Bse8I GATNNNNATC 1 cut(s) 105
BseAI TCCGGA 1 cut(s) 274
BseDI CCNNGG 1 cut(s) 453
BseGI GGATG 2 cut(s) 112, 568
BseJI GATNNNNATC 1 cut(s) 105
BseLI CCNNNNNNNGG 1 cut(s) 704
BseMI GCAATG 1 cut(s) 376
BseNI ACTGG 4 cut(s) 244, 337, 363, 768
BseRI GAGGAG 1 cut(s) 361
BseSI GKGCMC 2 cut(s) 526, 754
BseXI GCAGC 1 cut(s) 295
BseYI CCCAGC 1 cut(s) 30
Bsh1285I CGRYCG 1 cut(s) 202
BshTI ACCGGT 1 cut(s) 509
BsiEI CGRYCG 1 cut(s) 202
BsiHKAI GWGCWC 1 cut(s) 754
BsiSI CCGG 3 cut(s) 275, 510, 655
BslI CCNNNNNNNGG 1 cut(s) 704
BsmAI GTCTC 1 cut(s) 172
BsmBI CGTCTC 1 cut(s) 172
Bsp119I TTCGAA 1 cut(s) 187
Bsp1286I GDGCHC 3 cut(s) 8, 526, 754
Bsp13I TCCGGA 1 cut(s) 274
Bsp143I GATC 4 cut(s) 100, 277, 352, 415
Bsp19I CCATGG 1 cut(s) 453
BspACI CCGC 2 cut(s) 147, 409
BspEI TCCGGA 1 cut(s) 274
BspHI TCATGA 1 cut(s) 315
BspLI GGNNCC 1 cut(s) 7
BspMI ACCTGC 1 cut(s) 605
BspPI GGATC 2 cut(s) 285, 410
BspT104I TTCGAA 1 cut(s) 187
BsrDI GCAATG 1 cut(s) 376
BsrFI RCCGGY 1 cut(s) 509
BsrI ACTGG 4 cut(s) 244, 337, 363, 768
BssAI RCCGGY 1 cut(s) 509
BssECI CCNNGG 1 cut(s) 453
BssMI GATC 4 cut(s) 100, 277, 352, 415
BssT1I CCWWGG 1 cut(s) 453
Bst4CI ACNGT 1 cut(s) 200
BstBI TTCGAA 1 cut(s) 187
BstC8I GCNNGC 1 cut(s) 46
BstDEI CTNAG 1 cut(s) 743
BstDSI CCRYGG 1 cut(s) 453
BstF5I GGATG 2 cut(s) 112, 568
BstHHI GCGC 1 cut(s) 602
BstKTI GATC 4 cut(s) 103, 280, 355, 418
BstMAI GTCTC 1 cut(s) 172
BstMBI GATC 4 cut(s) 100, 277, 352, 415
BstMCI CGRYCG 1 cut(s) 202
BstMWI GCNNNNNNNGC 3 cut(s) 486, 521, 721
BstNSI RCATGY 1 cut(s) 588
BstSLI GKGCMC 2 cut(s) 526, 754
BstV1I GCAGC 1 cut(s) 295
BtgI CCRYGG 1 cut(s) 453
BtgZI GCGATG 1 cut(s) 717
BtsCI GGATG 2 cut(s) 112, 568
BtsI GCAGTG 1 cut(s) 156
BtsIMutI CAGTG 1 cut(s) 156
BveI ACCTGC 1 cut(s) 605
Cac8I GCNNGC 1 cut(s) 46
CciI TCATGA 1 cut(s) 315
CfoI GCGC 1 cut(s) 602
Cfr10I RCCGGY 1 cut(s) 509
Cfr13I GGNCC 1 cut(s) 272
Csp6I GTAC 2 cut(s) 673, 760
CspAI ACCGGT 1 cut(s) 509
CspCI CAANNNNNGTGG 2 cut(s) 132, 167
CviAII CATG 4 cut(s) 316, 454, 585, 699
CviJI RGCY 7 cut(s) 6, 34, 48, 302, 489, 724, 742
CviKI_1 RGCY 7 cut(s) 6, 34, 48, 302, 489, 724, 742
CviQI GTAC 2 cut(s) 673, 760
DdeI CTNAG 1 cut(s) 743
DpnI GATC 4 cut(s) 102, 279, 354, 417
DpnII GATC 4 cut(s) 100, 277, 352, 415
Eco130I CCWWGG 1 cut(s) 453
Eco24I GRGCYC 1 cut(s) 8
Eco47I GGWCC 1 cut(s) 272
Eco57I CTGAAG 1 cut(s) 252
EcoT14I CCWWGG 1 cut(s) 453
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 1 cut(s) 453
Esp3I CGTCTC 1 cut(s) 172
FaeI CATG 4 cut(s) 319, 457, 588, 702
FaiI YATR 7 cut(s) 72, 96, 317, 365, 455, 586, 700
FatI CATG 4 cut(s) 315, 453, 584, 698
FbaI TGATCA 1 cut(s) 100
Fnu4HI GCNGC 1 cut(s) 284
FokI GGATG 2 cut(s) 99, 575
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 1 cut(s) 284
FspBI CTAG 2 cut(s) 165, 395
GlaI GCGC 1 cut(s) 601
GluI GCNGC 1 cut(s) 284
GsaI CCCAGC 1 cut(s) 34
HapII CCGG 3 cut(s) 275, 510, 655
HhaI GCGC 1 cut(s) 602
Hin1II CATG 4 cut(s) 319, 457, 588, 702
Hin6I GCGC 1 cut(s) 600
HinP1I GCGC 1 cut(s) 600
HindIII AAGCTT 1 cut(s) 740
HinfI GANTC 3 cut(s) 226, 531, 780
HpaII CCGG 3 cut(s) 275, 510, 655
HphI GGTGA 1 cut(s) 499
Hpy166II GTNNAC 2 cut(s) 502, 752
Hpy188I TCNGA 4 cut(s) 174, 415, 430, 720
Hpy188III TCNNGA 5 cut(s) 64, 275, 316, 343, 631
Hpy8I GTNNAC 2 cut(s) 502, 752
HpyAV CCTTC 1 cut(s) 276
HpyCH4III ACNGT 1 cut(s) 200
HpyCH4V TGCA 5 cut(s) 44, 112, 515, 590, 752
HpyF10VI GCNNNNNNNGC 3 cut(s) 486, 521, 721
HpyF3I CTNAG 1 cut(s) 743
Hsp92II CATG 4 cut(s) 319, 457, 588, 702
HspAI GCGC 1 cut(s) 600
Kpn2I TCCGGA 1 cut(s) 274
Ksp22I TGATCA 1 cut(s) 100
Kzo9I GATC 4 cut(s) 100, 277, 352, 415
LmnI GCTCC 2 cut(s) 11, 373
Lsp1109I GCAGC 1 cut(s) 295
LweI GCATC 2 cut(s) 121, 388
MaeI CTAG 2 cut(s) 165, 395
MaeIII GTNAC 1 cut(s) 542
MalI GATC 4 cut(s) 102, 279, 354, 417
MboI GATC 4 cut(s) 100, 277, 352, 415
MfeI CAATTG 1 cut(s) 516
MhlI GDGCHC 3 cut(s) 8, 526, 754
MluCI AATT 9 cut(s) 134, 255, 481, 516, 550, 591, 606, 634, 662
MlyI GAGTC 1 cut(s) 235
MmeI TCCRAC 1 cut(s) 48
MnlI CCTC 6 cut(s) 24, 238, 242, 339, 705, 726
MroI TCCGGA 1 cut(s) 274
MseI TTAA 2 cut(s) 137, 776
MslI CAYNNNNRTG 1 cut(s) 697
MspI CCGG 3 cut(s) 275, 510, 655
MunI CAATTG 1 cut(s) 516
MwoI GCNNNNNNNGC 3 cut(s) 486, 521, 721
NcoI CCATGG 1 cut(s) 453
NdeII GATC 4 cut(s) 100, 277, 352, 415
NlaIII CATG 4 cut(s) 319, 457, 588, 702
NlaIV GGNNCC 1 cut(s) 7
NspI RCATGY 1 cut(s) 588
NspV TTCGAA 1 cut(s) 187
PagI TCATGA 1 cut(s) 315
PciI ACATGT 1 cut(s) 584
PfeI GAWTC 2 cut(s) 531, 780
PflMI CCANNNNNTGG 1 cut(s) 704
PinAI ACCGGT 1 cut(s) 509
PkrI GCNGC 1 cut(s) 285
PleI GAGTC 1 cut(s) 234
PpsI GAGTC 1 cut(s) 234
PscI ACATGT 1 cut(s) 584
PspFI CCCAGC 1 cut(s) 30
PspN4I GGNNCC 1 cut(s) 7
PspPI GGNCC 1 cut(s) 272
RsaI GTAC 2 cut(s) 674, 761
RsaNI GTAC 2 cut(s) 673, 760
RseI CAYNNNNRTG 1 cut(s) 697
SaqAI TTAA 2 cut(s) 137, 776
SatI GCNGC 1 cut(s) 284
Sau3AI GATC 4 cut(s) 100, 277, 352, 415
Sau96I GGNCC 1 cut(s) 272
ScaI AGTACT 1 cut(s) 674
SchI GAGTC 1 cut(s) 235
SduI GDGCHC 3 cut(s) 8, 526, 754
SfaNI GCATC 2 cut(s) 121, 388
SfuI TTCGAA 1 cut(s) 187
SgrAI CRCCGGYG 1 cut(s) 509
SinI GGWCC 1 cut(s) 272
SmiMI CAYNNNNRTG 1 cut(s) 697
Sse9I AATT 9 cut(s) 134, 255, 481, 516, 550, 591, 606, 634, 662
SsiI CCGC 2 cut(s) 147, 409
SspMI CTAG 2 cut(s) 165, 395
StyI CCWWGG 1 cut(s) 453
TaaI ACNGT 1 cut(s) 200
TaqI TCGA 3 cut(s) 187, 202, 555
TasI AATT 9 cut(s) 134, 255, 481, 516, 550, 591, 606, 634, 662
TatI WGTACW 1 cut(s) 672
TfiI GAWTC 2 cut(s) 531, 780
Tru1I TTAA 2 cut(s) 137, 776
Tru9I TTAA 2 cut(s) 137, 776
TscAI CASTG 1 cut(s) 156
TseI GCWGC 1 cut(s) 283
TspDTI ATGAA 1 cut(s) 116
TspRI CASTG 1 cut(s) 156
Van91I CCANNNNNTGG 1 cut(s) 704
VneI GTGCAC 1 cut(s) 750
VpaK11BI GGWCC 1 cut(s) 272
XapI RAATTY 3 cut(s) 606, 634, 662
XceI RCATGY 1 cut(s) 588
XspI CTAG 2 cut(s) 165, 395
ZrmI AGTACT 1 cut(s) 674
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.