Rorug06G0360300

phosphatase 2c

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0009593
Physical Location & Seq
Reverse (-)
50886560 .. 50887816
1257 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0360300.1

Sequence Viewer

Length: 909 bp
ATGTCTCGCAGACCTCTAAACCCATATGCGCAACCCTATTTTGCTCACCATTGCCATCCCAATCAAAGCTCTCTCTGTGAAGTCCCAACATGTGAAGCTACTGCCACGGATCAAAACCCTAGAGTTGTTGTTCCTAGGAGAAAGAGAAACAACTTCAGGCGCGAGAGGAACGCGGGGCCTAGGTTGAGGTCTTCACAAACAAGCTTGGCCGAAAGCCCAAATCATAAAGCTTCAAACTTTGCATCAACCAGTAACTGCGGTGGTGCTGTAGTTCCCTGTTCTTCAAGGCCTGAAAGGAAAAACAATAGGGGAAGGAATCTAGCTCCGAGGTTGAGTCTTGGCCCAAGTCATGGGGTTCAAGCATCTAGCTTTGCCAATGGGAAGGGTTCTGTGATTCCTTTTCCTGAAAGTCCAGACGAGCAAAATGGGTCTGAGGTTACTACTGTAATGATCAAGAACATCCCTTGTCAGCTTAGAAGGAGCGATTTGCTGCTCAAATTGAAAGAGCATTGCCGAGAGGAGAACAAAAAGGCTGATTCTTTGCACAAATCGGAGTTCAATTTCTTCTATTTACCACTGGATTTCAAAAAATTTTGGGAGAAGAAGAAGATTGCAAATCTTGGCTACGGTTTCGTGAATTTCACCACTGCTGTTGGAGCACTAGGTTTCTATGAGAAATACCACAAGACTATGTGGAAGGAGGTCATTCAGAGCACCAAAATCTGTGAGATAACTTGCGCCAAGATCCAGGGTTTTGAGGCACTGAGGAAAAGTTTTAGACGCAAAATATATCATGGTCTCACAAACGATTTTTTGCCTGTGATCTTGGCTCCTGCATGTGATGGAGTGAGGGAGTCCAACCACATACCTGTAGGACGACTTTTGGGTGCAGCGGAGATTGAAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

302

Amino Acids

33.97

Weight (kDa)

9.69

Isoelectric Point (pI)

57.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_2 PF04059 147 - 260 7.4e-13 RNA recognition motif 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 30
AccB7I CCANNNNNTGG 1 cut(s) 350
AccII CGCG 2 cut(s) 162, 173
AciI CCGC 3 cut(s) 173, 258, 893
AclWI GGATC 2 cut(s) 117, 739
AcoI YGGCCR 1 cut(s) 207
AcsI RAATTY 2 cut(s) 590, 637
AcuI CTGAAG 1 cut(s) 139
AfiI CCNNNNNNNGG 1 cut(s) 350
AflIII ACRYGT 1 cut(s) 89
AgsI TTSAA 7 cut(s) 234, 285, 359, 502, 559, 586, 902
AjnI CCWGG 1 cut(s) 747
AluBI AGCT 7 cut(s) 69, 98, 204, 230, 323, 369, 472
AluI AGCT 7 cut(s) 69, 98, 204, 230, 323, 369, 472
Alw21I GWGCWC 2 cut(s) 661, 716
Alw26I GTCTC 2 cut(s) 9, 803
AlwI GGATC 2 cut(s) 117, 739
AlwNI CAGNNNCTG 1 cut(s) 255
AoxI GGCC 4 cut(s) 176, 207, 287, 340
ApeKI GCWGC 2 cut(s) 490, 890
ApoI RAATTY 2 cut(s) 590, 637
AspA2I CCTAGG 2 cut(s) 134, 179
AspLEI GCGC 3 cut(s) 31, 162, 740
AspS9I GGNCC 2 cut(s) 176, 341
AsuHPI GGTGA 2 cut(s) 38, 634
AvrII CCTAGG 2 cut(s) 134, 179
BbsI GAAGAC 1 cut(s) 183
Bbv12I GWGCWC 2 cut(s) 661, 716
BbvI GCAGC 2 cut(s) 477, 902
BccI CCATC 2 cut(s) 63, 836
BciT130I CCWGG 1 cut(s) 749
BclI TGATCA 1 cut(s) 450
BcoDI GTCTC 2 cut(s) 9, 803
BfaI CTAG 6 cut(s) 120, 135, 180, 320, 366, 662
BfmI CTRYAG 2 cut(s) 267, 870
BisI GCNGC 2 cut(s) 491, 891
BlnI CCTAGG 2 cut(s) 134, 179
BlsI GCNGC 2 cut(s) 492, 892
Bme1390I CCNGG 1 cut(s) 749
BmgT120I GGNCC 2 cut(s) 176, 341
BmiI GGNNCC 2 cut(s) 177, 831
BmrFI CCNGG 1 cut(s) 749
BmsI GCATC 2 cut(s) 251, 371
BpiI GAAGAC 1 cut(s) 183
BsaI GGTCTC 1 cut(s) 803
BsaJI CCNNGG 5 cut(s) 105, 134, 179, 326, 748
Bsc4I CCNNNNNNNGG 1 cut(s) 350
Bse1I ACTGG 2 cut(s) 249, 582
Bse3DI GCAATG 2 cut(s) 49, 508
BseBI CCWGG 1 cut(s) 749
BseDI CCNNGG 5 cut(s) 105, 134, 179, 326, 748
BseGI GGATG 2 cut(s) 55, 459
BseLI CCNNNNNNNGG 1 cut(s) 350
BseMI GCAATG 2 cut(s) 49, 508
BseMII CTCAG 2 cut(s) 423, 755
BseNI ACTGG 2 cut(s) 249, 582
BseRI GAGGAG 1 cut(s) 533
BseXI GCAGC 2 cut(s) 477, 902
BsgI GTGCAG 1 cut(s) 909
Bsh1236I CGCG 2 cut(s) 162, 173
BshFI GGCC 4 cut(s) 178, 209, 289, 342
BsiHKAI GWGCWC 2 cut(s) 661, 716
BslFI GGGAC 1 cut(s) 68
BslI CCNNNNNNNGG 1 cut(s) 350
BsmAI GTCTC 2 cut(s) 9, 803
BsmFI GGGAC 1 cut(s) 68
BsnI GGCC 4 cut(s) 178, 209, 289, 342
Bso31I GGTCTC 1 cut(s) 803
Bsp1286I GDGCHC 2 cut(s) 661, 716
Bsp143I GATC 4 cut(s) 109, 450, 744, 822
BspACI CCGC 3 cut(s) 173, 258, 893
BspANI GGCC 4 cut(s) 178, 209, 289, 342
BspCNI CTCAG 2 cut(s) 424, 756
BspFNI CGCG 2 cut(s) 162, 173
BspLI GGNNCC 2 cut(s) 177, 831
BspPI GGATC 2 cut(s) 117, 739
BspTNI GGTCTC 1 cut(s) 803
BsrDI GCAATG 2 cut(s) 49, 508
BsrI ACTGG 2 cut(s) 249, 582
BssECI CCNNGG 5 cut(s) 105, 134, 179, 326, 748
BssMI GATC 4 cut(s) 109, 450, 744, 822
BssT1I CCWWGG 2 cut(s) 134, 179
Bst2UI CCWGG 1 cut(s) 749
Bst4CI ACNGT 2 cut(s) 445, 629
BstDEI CTNAG 3 cut(s) 432, 473, 764
BstDSI CCRYGG 1 cut(s) 105
BstF5I GGATG 2 cut(s) 55, 459
BstFNI CGCG 2 cut(s) 162, 173
BstHHI GCGC 3 cut(s) 31, 162, 740
BstKTI GATC 4 cut(s) 112, 453, 747, 825
BstMAI GTCTC 2 cut(s) 9, 803
BstMBI GATC 4 cut(s) 109, 450, 744, 822
BstMWI GCNNNNNNNGC 1 cut(s) 656
BstNI CCWGG 1 cut(s) 749
BstNSI RCATGY 2 cut(s) 93, 840
BstSCI CCNGG 1 cut(s) 747
BstSFI CTRYAG 2 cut(s) 267, 870
BstUI CGCG 2 cut(s) 162, 173
BstV1I GCAGC 2 cut(s) 477, 902
BstV2I GAAGAC 1 cut(s) 183
BstX2I RGATCY 1 cut(s) 744
BstYI RGATCY 1 cut(s) 744
BsuRI GGCC 4 cut(s) 178, 209, 289, 342
BtgI CCRYGG 1 cut(s) 105
BtsCI GGATG 2 cut(s) 55, 459
BtsI GCAGTG 1 cut(s) 645
BtsIMutI CAGTG 3 cut(s) 575, 645, 761
CaiI CAGNNNCTG 1 cut(s) 255
CfoI GCGC 3 cut(s) 31, 162, 740
Cfr13I GGNCC 2 cut(s) 176, 341
CseI GACGC 1 cut(s) 789
CspCI CAANNNNNGTGG 2 cut(s) 634, 669
CviAII CATG 4 cut(s) 90, 350, 794, 837
DdeI CTNAG 3 cut(s) 432, 473, 764
DpnI GATC 4 cut(s) 111, 452, 746, 824
DpnII GATC 4 cut(s) 109, 450, 744, 822
EaeI YGGCCR 1 cut(s) 207
Eco130I CCWWGG 2 cut(s) 134, 179
Eco147I AGGCCT 1 cut(s) 289
Eco31I GGTCTC 1 cut(s) 803
Eco57I CTGAAG 1 cut(s) 139
EcoO109I RGGNCCY 1 cut(s) 176
EcoRII CCWGG 1 cut(s) 747
EcoT14I CCWWGG 2 cut(s) 134, 179
ErhI CCWWGG 2 cut(s) 134, 179
FaeI CATG 4 cut(s) 93, 353, 797, 840
FaqI GGGAC 1 cut(s) 68
FatI CATG 4 cut(s) 89, 349, 793, 836
FauI CCCGC 1 cut(s) 166
FauNDI CATATG 1 cut(s) 25
FbaI TGATCA 1 cut(s) 450
Fnu4HI GCNGC 2 cut(s) 491, 891
FokI GGATG 2 cut(s) 42, 446
Fsp4HI GCNGC 2 cut(s) 491, 891
FspBI CTAG 6 cut(s) 120, 135, 180, 320, 366, 662
FspI TGCGCA 1 cut(s) 30
GlaI GCGC 3 cut(s) 30, 161, 739
GluI GCNGC 2 cut(s) 491, 891
HaeIII GGCC 4 cut(s) 178, 209, 289, 342
HgaI GACGC 1 cut(s) 789
HhaI GCGC 3 cut(s) 31, 162, 740
Hin1II CATG 4 cut(s) 93, 353, 797, 840
Hin6I GCGC 3 cut(s) 29, 160, 738
HinP1I GCGC 3 cut(s) 29, 160, 738
HindIII AAGCTT 2 cut(s) 202, 228
HinfI GANTC 5 cut(s) 316, 334, 394, 536, 854
HphI GGTGA 2 cut(s) 38, 634
Hpy188I TCNGA 4 cut(s) 327, 433, 553, 711
Hpy188III TCNNGA 4 cut(s) 404, 413, 454, 634
HpyAV CCTTC 4 cut(s) 306, 376, 471, 691
HpyCH4III ACNGT 2 cut(s) 445, 629
HpyCH4V TGCA 5 cut(s) 242, 544, 614, 836, 890
HpyF10VI GCNNNNNNNGC 1 cut(s) 656
HpyF3I CTNAG 3 cut(s) 432, 473, 764
Hsp92II CATG 4 cut(s) 93, 353, 797, 840
HspAI GCGC 3 cut(s) 29, 160, 738
Ksp22I TGATCA 1 cut(s) 450
Kzo9I GATC 4 cut(s) 109, 450, 744, 822
LmnI GCTCC 4 cut(s) 328, 480, 656, 835
Lsp1109I GCAGC 2 cut(s) 477, 902
LweI GCATC 2 cut(s) 251, 371
MaeI CTAG 6 cut(s) 120, 135, 180, 320, 366, 662
MaeIII GTNAC 2 cut(s) 251, 436
MalI GATC 4 cut(s) 111, 452, 746, 824
MboI GATC 4 cut(s) 109, 450, 744, 822
MboII GAAGA 6 cut(s) 183, 273, 556, 613, 616, 619
MflI RGATCY 1 cut(s) 744
MhlI GDGCHC 2 cut(s) 661, 716
MluCI AATT 4 cut(s) 497, 559, 590, 637
MlyI GAGTC 2 cut(s) 343, 863
MmeI TCCRAC 2 cut(s) 634, 882
MspA1I CMGCKG 1 cut(s) 893
MspR9I CCNGG 1 cut(s) 749
MvaI CCWGG 1 cut(s) 749
MvnI CGCG 2 cut(s) 162, 173
MwoI GCNNNNNNNGC 1 cut(s) 656
NdeI CATATG 1 cut(s) 25
NdeII GATC 4 cut(s) 109, 450, 744, 822
NlaIII CATG 4 cut(s) 93, 353, 797, 840
NlaIV GGNNCC 2 cut(s) 177, 831
NmeAIII GCCGAG 1 cut(s) 539
NsbI TGCGCA 1 cut(s) 30
NspI RCATGY 2 cut(s) 93, 840
PceI AGGCCT 1 cut(s) 289
PciI ACATGT 1 cut(s) 89
PfeI GAWTC 3 cut(s) 316, 394, 536
PflMI CCANNNNNTGG 1 cut(s) 350
PkrI GCNGC 2 cut(s) 492, 892
PleI GAGTC 2 cut(s) 342, 862
PpsI GAGTC 2 cut(s) 342, 862
PscI ACATGT 1 cut(s) 89
Psp6I CCWGG 1 cut(s) 747
PspGI CCWGG 1 cut(s) 747
PspN4I GGNNCC 2 cut(s) 177, 831
PspPI GGNCC 2 cut(s) 176, 341
PstNI CAGNNNCTG 1 cut(s) 255
PsuI RGATCY 1 cut(s) 744
SatI GCNGC 2 cut(s) 491, 891
Sau3AI GATC 4 cut(s) 109, 450, 744, 822
Sau96I GGNCC 2 cut(s) 176, 341
SchI GAGTC 2 cut(s) 343, 863
ScrFI CCNGG 1 cut(s) 749
SduI GDGCHC 2 cut(s) 661, 716
SfaNI GCATC 2 cut(s) 251, 371
SfcI CTRYAG 2 cut(s) 267, 870
Sse9I AATT 4 cut(s) 497, 559, 590, 637
SseBI AGGCCT 1 cut(s) 289
SsiI CCGC 3 cut(s) 173, 258, 893
SspMI CTAG 6 cut(s) 120, 135, 180, 320, 366, 662
StuI AGGCCT 1 cut(s) 289
StyD4I CCNGG 1 cut(s) 747
StyI CCWWGG 2 cut(s) 134, 179
TaaI ACNGT 2 cut(s) 445, 629
TasI AATT 4 cut(s) 497, 559, 590, 637
TfiI GAWTC 3 cut(s) 316, 394, 536
TscAI CASTG 3 cut(s) 582, 652, 768
TseI GCWGC 2 cut(s) 490, 890
TspGWI ACGGA 1 cut(s) 122
TspRI CASTG 3 cut(s) 582, 652, 768
Van91I CCANNNNNTGG 1 cut(s) 350
XapI RAATTY 2 cut(s) 590, 637
XceI RCATGY 2 cut(s) 93, 840
XmaJI CCTAGG 2 cut(s) 134, 179
XspI CTAG 6 cut(s) 120, 135, 180, 320, 366, 662
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.