Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0009593

Physical Location & Seq

Genomic Coordinates Forward (+)

50897935 .. 50900649

Gene Structure 2715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0360500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGCATATAGAGGTCGTGGAGGATTTGGACATGGTAACTATGCTAAGGAAGAGCCCTTTGTGCCATTTCCTGATATTCATTTACCTGATGCCGGAGGTATTTTGTCTGAGCTAGATCAAAAGAAAAACAAAGGTTTGAAGGAGGAAGAAACATTAATCAGAGATACTCTGAATTGGCTAATGAAATCCGAATATAATCTTGACAAGACTGATAGGCAAGACAAGGATGTTGAAATATCTGAGAGAACCAAGCGAAAGGCTAAGAGAGAAATTGATTCTTTCTCACAGTATTTGGTGCCCAGTATGTTTCCTAGAGAACTGACTAGAGGTTCAAATGTGCGGCAGGTGAGCAGAGAAAATGTTAAATGGGACAAACGGAACACAGAAAAGAACTCTGAGATATACTGGAATCAAATTGAAAAGCGAGAACAGAATTCGGATGCAAAGAAACAGAAAGAAGGTGAAAATGATGAGGAAGAGGATGAAGATGCGGATGCGGAAGAGGAGGAAGATGAGGACCCTAGTGATGATGATTATGCTCAGAACATAGACTTTGATGACGATGAGGATGATTTTAATGCAGACGATGGTGATGATGAACCTCTTTTGGAGGAAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

206

Amino Acids

24.14

Weight (kDa)

4.33

Isoelectric Point (pI)

62.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009593)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47380
fragaria_vesca	FvH4_2g34570 FvH4_2g34570 FvH4_2g34570 FvH4_2g34570 FvH4_2g34570
malus_domestica	MD08G1102700.v1.1 MD15G1084200.v1.1
prunus_persica	Prupe.1G437600_v2.0.a1
pyrus_communis	pycom08g08420
rosa_chinensis	RchiOBHm_Chr6g0307591 RchiOBHm_Chr6g0307751
rosa_laevigata	RLG00000010703
rosa_multiflora	Rmu_sc0000031.1_g000027
rosa_roxburghii	Rroxscaffold_7G00160920
rosa_rugosa	Rorug06G0360100 Rorug06G0360200 Rorug06G0360300 Rorug06G0360500
rosa_samantha	Rh6AG469600 Rh6CG485800
rosa_wichuraiana	Rw6G041000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	334
Acc36I	ACCTGC	1 cut(s)	334
AccB1I	GGYRCC	1 cut(s)	295
AciI	CCGC	3 cut(s)	340, 491, 497
AcsI	RAATTY	1 cut(s)	433
AfiI	CCNNNNNNNGG	1 cut(s)	92
AgsI	TTSAA	4 cut(s)	139, 233, 333, 419
AluBI	AGCT	1 cut(s)	112
AluI	AGCT	1 cut(s)	112
ApoI	RAATTY	1 cut(s)	433
AseI	ATTAAT	1 cut(s)	155
AspS9I	GGNCC	1 cut(s)	517
AsuHPI	GGTGA	3 cut(s)	358, 473, 602
AvaII	GGWCC	1 cut(s)	517
BaeGI	GKGCMC	1 cut(s)	300
BanI	GGYRCC	1 cut(s)	295
BanII	GRGCYC	1 cut(s)	57
BccI	CCATC	1 cut(s)	581
BfaI	CTAG	4 cut(s)	113, 312, 324, 522
BfuAI	ACCTGC	1 cut(s)	334
BisI	GCNGC	1 cut(s)	341
BlsI	GCNGC	1 cut(s)	342
Bme18I	GGWCC	1 cut(s)	517
BmgT120I	GGNCC	1 cut(s)	517
BmiI	GGNNCC	2 cut(s)	297, 519
BmrI	ACTGGG	1 cut(s)	294
BmsI	GCATC	4 cut(s)	79, 430, 478, 484
BmuI	ACTGGG	1 cut(s)	294
Bpu10I	CCTNAGC	1 cut(s)	45
Bsc4I	CCNNNNNNNGG	1 cut(s)	92
Bse1I	ACTGG	2 cut(s)	300, 410
BseGI	GGATG	5 cut(s)	232, 445, 487, 499, 574
BseLI	CCNNNNNNNGG	1 cut(s)	92
BseMII	CTCAG	4 cut(s)	99, 231, 387, 554
BseNI	ACTGG	2 cut(s)	300, 410
BseRI	GAGGAG	1 cut(s)	518
BseSI	GKGCMC	1 cut(s)	300
BshNI	GGYRCC	1 cut(s)	295
BsiSI	CCGG	1 cut(s)	93
BslFI	GGGAC	1 cut(s)	383
BslI	CCNNNNNNNGG	1 cut(s)	92
BsmFI	GGGAC	1 cut(s)	383
Bsp1286I	GDGCHC	2 cut(s)	57, 300
Bsp143I	GATC	1 cut(s)	115
BspACI	CCGC	3 cut(s)	340, 491, 497
BspCNI	CTCAG	4 cut(s)	100, 232, 388, 553
BspLI	GGNNCC	2 cut(s)	297, 519
BspMI	ACCTGC	1 cut(s)	334
BspQI	GCTCTTC	1 cut(s)	45
BspT107I	GGYRCC	1 cut(s)	295
BsrI	ACTGG	2 cut(s)	300, 410
BssMI	GATC	1 cut(s)	115
Bst4CI	ACNGT	1 cut(s)	288
Bst6I	CTCTTC	3 cut(s)	45, 471, 495
BstDEI	CTNAG	6 cut(s)	45, 108, 240, 261, 396, 540
BstF5I	GGATG	5 cut(s)	232, 445, 487, 499, 574
BstKTI	GATC	1 cut(s)	118
BstMBI	GATC	1 cut(s)	115
BstMWI	GCNNNNNNNGC	1 cut(s)	61
BstSLI	GKGCMC	1 cut(s)	300
BtsCI	GGATG	5 cut(s)	232, 445, 487, 499, 574
BveI	ACCTGC	1 cut(s)	334
Cfr13I	GGNCC	1 cut(s)	517
CviAII	CATG	1 cut(s)	32
CviJI	RGCY	4 cut(s)	55, 112, 178, 260
CviKI_1	RGCY	4 cut(s)	55, 112, 178, 260
DdeI	CTNAG	6 cut(s)	45, 108, 240, 261, 396, 540
DpnI	GATC	1 cut(s)	117
DpnII	GATC	1 cut(s)	115
Eam1104I	CTCTTC	3 cut(s)	45, 471, 495
EarI	CTCTTC	3 cut(s)	45, 471, 495
Eco24I	GRGCYC	1 cut(s)	57
Eco47I	GGWCC	1 cut(s)	517
EcoO109I	RGGNCCY	1 cut(s)	517
EcoRI	GAATTC	1 cut(s)	433
EcoT38I	GRGCYC	1 cut(s)	57
FaeI	CATG	1 cut(s)	35
FaiI	YATR	9 cut(s)	7, 9, 33, 42, 195, 305, 403, 537, 548
FaqI	GGGAC	1 cut(s)	383
FatI	CATG	1 cut(s)	31
Fnu4HI	GCNGC	1 cut(s)	341
FokI	GGATG	5 cut(s)	239, 452, 494, 506, 581
FriOI	GRGCYC	1 cut(s)	57
Fsp4HI	GCNGC	1 cut(s)	341
FspBI	CTAG	4 cut(s)	113, 312, 324, 522
GluI	GCNGC	1 cut(s)	341
HapII	CCGG	1 cut(s)	93
Hin1II	CATG	1 cut(s)	35
HinfI	GANTC	2 cut(s)	275, 409
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	3 cut(s)	358, 473, 602
Hpy188I	TCNGA	8 cut(s)	109, 161, 171, 190, 241, 397, 439, 543
Hpy188III	TCNNGA	2 cut(s)	71, 200
HpyAV	CCTTC	2 cut(s)	133, 452
HpyCH4III	ACNGT	1 cut(s)	288
HpyCH4V	TGCA	2 cut(s)	443, 581
HpyF10VI	GCNNNNNNNGC	1 cut(s)	61
HpyF3I	CTNAG	6 cut(s)	45, 108, 240, 261, 396, 540
Hsp92II	CATG	1 cut(s)	35
Kzo9I	GATC	1 cut(s)	115
LguI	GCTCTTC	1 cut(s)	45
LpnPI	CCDG	6 cut(s)	84, 99, 106, 313, 329, 391
LweI	GCATC	4 cut(s)	79, 430, 478, 484
MaeI	CTAG	4 cut(s)	113, 312, 324, 522
MaeIII	GTNAC	1 cut(s)	35
MalI	GATC	1 cut(s)	117
MboI	GATC	1 cut(s)	115
MboII	GAAGA	6 cut(s)	62, 158, 488, 497, 512, 521
MhlI	GDGCHC	2 cut(s)	57, 300
MluCI	AATT	4 cut(s)	172, 270, 414, 433
MseI	TTAA	3 cut(s)	155, 363, 576
MspI	CCGG	1 cut(s)	93
MwoI	GCNNNNNNNGC	1 cut(s)	61
NdeII	GATC	1 cut(s)	115
NlaIII	CATG	1 cut(s)	35
NlaIV	GGNNCC	2 cut(s)	297, 519
PaqCI	CACCTGC	1 cut(s)	334
PciSI	GCTCTTC	1 cut(s)	45
PfeI	GAWTC	2 cut(s)	275, 409
PkrI	GCNGC	1 cut(s)	342
PpuMI	RGGWCCY	1 cut(s)	517
PshBI	ATTAAT	1 cut(s)	155
Psp5II	RGGWCCY	1 cut(s)	517
PspN4I	GGNNCC	2 cut(s)	297, 519
PspPI	GGNCC	1 cut(s)	517
PspPPI	RGGWCCY	1 cut(s)	517
SapI	GCTCTTC	1 cut(s)	45
SaqAI	TTAA	3 cut(s)	155, 363, 576
SatI	GCNGC	1 cut(s)	341
Sau3AI	GATC	1 cut(s)	115
Sau96I	GGNCC	1 cut(s)	517
SduI	GDGCHC	2 cut(s)	57, 300
SetI	ASST	9 cut(s)	16, 88, 100, 114, 136, 331, 348, 463, 604
SfaNI	GCATC	4 cut(s)	79, 430, 478, 484
SinI	GGWCC	1 cut(s)	517
Sse9I	AATT	4 cut(s)	172, 270, 414, 433
SsiI	CCGC	3 cut(s)	340, 491, 497
SspMI	CTAG	4 cut(s)	113, 312, 324, 522
TaaI	ACNGT	1 cut(s)	288
TasI	AATT	4 cut(s)	172, 270, 414, 433
TauI	GCSGC	1 cut(s)	343
TfiI	GAWTC	2 cut(s)	275, 409
Tru1I	TTAA	3 cut(s)	155, 363, 576
Tru9I	TTAA	3 cut(s)	155, 363, 576
TspDTI	ATGAA	4 cut(s)	68, 197, 498, 612
TspGWI	ACGGA	1 cut(s)	391
VpaK11BI	GGWCC	1 cut(s)	517
VspI	ATTAAT	1 cut(s)	155
XapI	RAATTY	1 cut(s)	433
XspI	CTAG	4 cut(s)	113, 312, 324, 522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.