Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007832

Physical Location & Seq

Genomic Coordinates Forward (+)

17805761 .. 17808993

Gene Structure 3233 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G48230.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGCGAAGATGATAAACAAGACGCTTGTACTTACATATATCTACTTACTAATCTACATTATTCTTTCTTCTGGAGTTATACTATACAACAAGTGGGTTCTATCTCCGAAATACTTCAATTTTCCACTTCCTATAACATTGACAATGATCCATATGGGATTTTCTGGATTCGTGGCTTTCCTTCTTATTCGGGTATTCAAGGTTGTCTCTCCTGTTAAAATGACTTTCGAAATATATGTGACATGTGTGGTGCCTATAAGCGCATTCTTTGCATCCAGTCTCTGGTTTGGAAATACTGCATATTTGCACATTTCAGTTGCTTTCATACAGATGCTCAAAGCACTAATGCCGGTAGCAACATTTCTTATGGCCGTTGTTTGTGGCACGGACAAAGCAAGGTGTGACGTGTTCATGAACATGGTGCTGGTGAGTGTTGGAGTTGTAGTATCCTCCTATGGGGAAATTAATTTCAATGTAATCGGCACGGTCTACCAGGTCATGGGAATATTTGCTGAAGCACTTAGACTGGTGCTAACTCAAGTTCTTCTTCAGAAAAAGGGCTTGACGTTGAACCCAGTCACCAGCTTATACTATATAGCTCCATGCAGCTTTGTTTTCCTGTCCTTGCCTTGGTATGTGCTGGAGAAACCAAATATAGATGTCTCGCAGATCCAATTCAACTTCTGGATCTTTTTCTCAAACGCTCTCTGCGCACTTGCCTTAAACTTCTCCATATTCTTAGTAATCGGAAGAACAGGCGCTGTAACAATCCGGGTTGCTGGGGTTCTCAAAGACTGGATTCTCATAGCCCTCTCCACTGTCATATTTCCTGAGTCCACAATCACTGGGCTGAATATAACTGGATATGCTATAGCGCTCTGTGGTGTTGTAATGTACAATTACATAAAAATCAAGGATGTAAAAGCGATTCAACCAACCACTGACAGCCTCCCAGATCGAATCACGAAGGACTGGAAGGAGAAGAATTCGTCAGATGGGGGGAGCCCCAGAGGATTGGAGCTTAACGATGAAGAAGCCCCTCTGATAACGTCGCGGTTGTCGCATATTGGCCGGACTCAGCTTGGAAACCACACGGCAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0012505 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

367

Amino Acids

40.79

Weight (kDa)

9.1

Isoelectric Point (pI)

32.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	7 - 227	1.5e-17	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007832)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48230 AT1G48230 AT3G17430 AT3G17430
fragaria_vesca	FvH4_4g21460 FvH4_4g21460 FvH4_4g21460 FvH4_4g21460
malus_domestica	MD13G1141000.v1.1 MD16G1137100.v1.1
prunus_persica	Prupe.1G106200_v2.0.a1 Prupe.1G106200_v2.0.a1
pyrus_communis	pycom13g12250
rosa_chinensis	RchiOBHm_Chr4g0427391
rosa_laevigata	RLG00000007247
rosa_multiflora	Rmu_ssc0000351.1_g000008
rosa_roxburghii	Rroxscaffold_5G00369060
rosa_rugosa	Rorug04G0217700
rosa_samantha	Rh4AG273700 Rh4BG279300 Rh4CG294600 Rh4DG276800
rosa_wichuraiana	Rw4G023740 Rw4G023800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	712
AccB1I	GGYRCC	1 cut(s)	250
AccB7I	CCANNNNNTGG	2 cut(s)	282, 499
AccI	GTMKAC	1 cut(s)	489
AccII	CGCG	1 cut(s)	1054
AciI	CCGC	1 cut(s)	1054
AclWI	GGATC	3 cut(s)	142, 664, 695
AcoI	YGGCCR	2 cut(s)	369, 1069
AcsI	RAATTY	1 cut(s)	985
AcuI	CTGAAG	2 cut(s)	533, 534
AfaI	GTAC	2 cut(s)	30, 896
AfeI	AGCGCT	1 cut(s)	876
AfiI	CCNNNNNNNGG	4 cut(s)	282, 456, 499, 630
AflIII	ACRYGT	2 cut(s)	242, 405
AgsI	TTSAA	6 cut(s)	118, 199, 472, 571, 679, 932
AjiI	CACGTC	1 cut(s)	406
AjnI	CCWGG	1 cut(s)	492
AluBI	AGCT	5 cut(s)	585, 599, 609, 1021, 1081
AluI	AGCT	5 cut(s)	585, 599, 609, 1021, 1081
Alw26I	GTCTC	3 cut(s)	211, 284, 667
AlwI	GGATC	3 cut(s)	142, 664, 695
AlwNI	CAGNNNCTG	2 cut(s)	282, 761
Aor51HI	AGCGCT	1 cut(s)	876
AoxI	GGCC	2 cut(s)	369, 1069
ApeKI	GCWGC	1 cut(s)	606
ApoI	RAATTY	1 cut(s)	985
AseI	ATTAAT	1 cut(s)	465
Asp700I	GAANNNNTTC	1 cut(s)	113
AspLEI	GCGC	4 cut(s)	263, 713, 761, 877
AsuC2I	CCSGG	1 cut(s)	773
AsuHPI	GGTGA	2 cut(s)	439, 571
AsuII	TTCGAA	1 cut(s)	228
BanI	GGYRCC	1 cut(s)	250
BanII	GRGCYC	1 cut(s)	1007
BbvI	GCAGC	1 cut(s)	618
BccI	CCATC	1 cut(s)	989
BceAI	ACGGC	1 cut(s)	356
BciT130I	CCWGG	1 cut(s)	494
BciVI	GTATCC	1 cut(s)	457
BcnI	CCSGG	1 cut(s)	773
BcoDI	GTCTC	3 cut(s)	211, 284, 667
BfmI	CTRYAG	1 cut(s)	870
BfoI	RGCGCY	2 cut(s)	762, 878
BfuI	GTATCC	1 cut(s)	457
BisI	GCNGC	1 cut(s)	607
BlsI	GCNGC	1 cut(s)	608
Bme1390I	CCNGG	2 cut(s)	494, 773
BmgBI	CACGTC	1 cut(s)	406
BmiI	GGNNCC	2 cut(s)	252, 1004
BmrFI	CCNGG	2 cut(s)	494, 773
BmrI	ACTGGG	2 cut(s)	569, 855
BmsI	GCATC	2 cut(s)	281, 321
BmuI	ACTGGG	2 cut(s)	569, 855
BpmI	CTGGAG	2 cut(s)	93, 662
Bpu14I	TTCGAA	1 cut(s)	228
BpuEI	CTTGAG	1 cut(s)	522
BpuMI	CCSGG	1 cut(s)	773
BsaJI	CCNNGG	1 cut(s)	629
BsaXI	ACNNNNNCTCC	2 cut(s)	429, 459
Bsc4I	CCNNNNNNNGG	4 cut(s)	282, 456, 499, 630
Bse118I	RCCGGY	1 cut(s)	349
Bse1I	ACTGG	7 cut(s)	276, 531, 575, 800, 850, 865, 977
BseBI	CCWGG	1 cut(s)	494
BseDI	CCNNGG	1 cut(s)	629
BseGI	GGATG	2 cut(s)	272, 922
BseLI	CCNNNNNNNGG	4 cut(s)	282, 456, 499, 630
BseMII	CTCAG	2 cut(s)	822, 1091
BseNI	ACTGG	7 cut(s)	276, 531, 575, 800, 850, 865, 977
BseXI	GCAGC	1 cut(s)	618
BseYI	CCCAGC	1 cut(s)	779
Bsh1236I	CGCG	1 cut(s)	1054
BshFI	GGCC	2 cut(s)	371, 1071
BshNI	GGYRCC	1 cut(s)	250
BsiSI	CCGG	3 cut(s)	350, 772, 1072
BslI	CCNNNNNNNGG	4 cut(s)	282, 456, 499, 630
BsmAI	GTCTC	3 cut(s)	211, 284, 667
BsmI	GAATGC	1 cut(s)	263
BsnI	GGCC	2 cut(s)	371, 1071
Bsp119I	TTCGAA	1 cut(s)	228
Bsp1286I	GDGCHC	1 cut(s)	1007
Bsp1407I	TGTACA	1 cut(s)	894
Bsp143I	GATC	4 cut(s)	147, 669, 687, 955
BspACI	CCGC	1 cut(s)	1054
BspANI	GGCC	2 cut(s)	371, 1071
BspCNI	CTCAG	2 cut(s)	823, 1090
BspFNI	CGCG	1 cut(s)	1054
BspHI	TCATGA	1 cut(s)	411
BspLI	GGNNCC	2 cut(s)	252, 1004
BspPI	GGATC	3 cut(s)	142, 664, 695
BspT104I	TTCGAA	1 cut(s)	228
BspT107I	GGYRCC	1 cut(s)	250
BsrFI	RCCGGY	1 cut(s)	349
BsrGI	TGTACA	1 cut(s)	894
BsrI	ACTGG	7 cut(s)	276, 531, 575, 800, 850, 865, 977
BssAI	RCCGGY	1 cut(s)	349
BssECI	CCNNGG	1 cut(s)	629
BssMI	GATC	4 cut(s)	147, 669, 687, 955
BssT1I	CCWWGG	1 cut(s)	629
Bst2UI	CCWGG	1 cut(s)	494
Bst4CI	ACNGT	2 cut(s)	487, 820
BstAPI	GCANNNNNTGC	1 cut(s)	269
BstAUI	TGTACA	1 cut(s)	894
BstBI	TTCGAA	1 cut(s)	228
BstDEI	CTNAG	4 cut(s)	521, 739, 831, 1077
BstF5I	GGATG	2 cut(s)	272, 922
BstFNI	CGCG	1 cut(s)	1054
BstH2I	RGCGCY	2 cut(s)	762, 878
BstHHI	GCGC	4 cut(s)	263, 713, 761, 877
BstKTI	GATC	4 cut(s)	150, 672, 690, 958
BstMAI	GTCTC	3 cut(s)	211, 284, 667
BstMBI	GATC	4 cut(s)	147, 669, 687, 955
BstMWI	GCNNNNNNNGC	3 cut(s)	269, 710, 1060
BstNI	CCWGG	1 cut(s)	494
BstNSI	RCATGY	1 cut(s)	246
BstSCI	CCNGG	2 cut(s)	492, 771
BstSFI	CTRYAG	1 cut(s)	870
BstUI	CGCG	1 cut(s)	1054
BstV1I	GCAGC	1 cut(s)	618
BstX2I	RGATCY	2 cut(s)	669, 687
BstXI	CCANNNNNNTGG	1 cut(s)	1015
BstYI	RGATCY	2 cut(s)	669, 687
BsuI	GTATCC	1 cut(s)	457
BsuRI	GGCC	2 cut(s)	371, 1071
BtrI	CACGTC	1 cut(s)	406
BtsCI	GGATG	2 cut(s)	272, 922
BtsIMutI	CAGTG	3 cut(s)	816, 843, 939
CaiI	CAGNNNCTG	2 cut(s)	282, 761
CciI	TCATGA	1 cut(s)	411
CfoI	GCGC	4 cut(s)	263, 713, 761, 877
Cfr10I	RCCGGY	1 cut(s)	349
CseI	GACGC	1 cut(s)	31
CsiI	ACCWGGT	1 cut(s)	492
Csp6I	GTAC	2 cut(s)	29, 895
CviAII	CATG	5 cut(s)	243, 412, 418, 499, 603
CviQI	GTAC	2 cut(s)	29, 895
DdeI	CTNAG	4 cut(s)	521, 739, 831, 1077
DpnI	GATC	4 cut(s)	149, 671, 689, 957
DpnII	GATC	4 cut(s)	147, 669, 687, 955
EaeI	YGGCCR	2 cut(s)	369, 1069
Eco130I	CCWWGG	1 cut(s)	629
Eco24I	GRGCYC	1 cut(s)	1007
Eco47III	AGCGCT	1 cut(s)	876
Eco57I	CTGAAG	2 cut(s)	533, 534
EcoRI	GAATTC	1 cut(s)	985
EcoRII	CCWGG	1 cut(s)	492
EcoT14I	CCWWGG	1 cut(s)	629
EcoT38I	GRGCYC	1 cut(s)	1007
ErhI	CCWWGG	1 cut(s)	629
FaeI	CATG	5 cut(s)	246, 415, 421, 502, 606
FalI	AAGNNNNNCTT	2 cut(s)	531, 563
FatI	CATG	5 cut(s)	242, 411, 417, 498, 602
FauNDI	CATATG	1 cut(s)	153
FblI	GTMKAC	1 cut(s)	489
Fnu4HI	GCNGC	1 cut(s)	607
FokI	GGATG	2 cut(s)	259, 929
FriOI	GRGCYC	1 cut(s)	1007
Fsp4HI	GCNGC	1 cut(s)	607
FspI	TGCGCA	1 cut(s)	712
GlaI	GCGC	4 cut(s)	262, 712, 760, 876
GluI	GCNGC	1 cut(s)	607
GsaI	CCCAGC	1 cut(s)	783
GsuI	CTGGAG	2 cut(s)	93, 662
HaeII	RGCGCY	2 cut(s)	762, 878
HaeIII	GGCC	2 cut(s)	371, 1071
HapII	CCGG	3 cut(s)	350, 772, 1072
HgaI	GACGC	1 cut(s)	31
HhaI	GCGC	4 cut(s)	263, 713, 761, 877
Hin1II	CATG	5 cut(s)	246, 415, 421, 502, 606
Hin6I	GCGC	4 cut(s)	261, 711, 759, 875
HinP1I	GCGC	4 cut(s)	261, 711, 759, 875
HinfI	GANTC	6 cut(s)	168, 799, 833, 928, 960, 1075
HpaII	CCGG	3 cut(s)	350, 772, 1072
HphI	GGTGA	2 cut(s)	439, 571
Hpy166II	GTNNAC	2 cut(s)	490, 837
Hpy188I	TCNGA	6 cut(s)	108, 552, 749, 994, 1044, 1103
Hpy188III	TCNNGA	6 cut(s)	72, 165, 412, 685, 830, 964
Hpy8I	GTNNAC	2 cut(s)	490, 837
Hpy99I	CGWCG	1 cut(s)	1054
HpyAV	CCTTC	3 cut(s)	191, 961, 970
HpyCH4III	ACNGT	2 cut(s)	487, 820
HpyCH4IV	ACGT	3 cut(s)	405, 566, 1049
HpyCH4V	TGCA	4 cut(s)	272, 299, 307, 606
HpyF10VI	GCNNNNNNNGC	3 cut(s)	269, 710, 1060
HpyF3I	CTNAG	4 cut(s)	521, 739, 831, 1077
HpySE526I	ACGT	3 cut(s)	405, 566, 1049
Hsp92II	CATG	5 cut(s)	246, 415, 421, 502, 606
HspAI	GCGC	4 cut(s)	261, 711, 759, 875
Kzo9I	GATC	4 cut(s)	147, 669, 687, 955
LmnI	GCTCC	3 cut(s)	604, 1002, 1018
Lsp1109I	GCAGC	1 cut(s)	618
LweI	GCATC	2 cut(s)	281, 321
MabI	ACCWGGT	1 cut(s)	492
MaeII	ACGT	3 cut(s)	405, 566, 1049
MaeIII	GTNAC	4 cut(s)	238, 401, 577, 763
MalI	GATC	4 cut(s)	149, 671, 689, 957
MboI	GATC	4 cut(s)	147, 669, 687, 955
MboII	GAAGA	7 cut(s)	19, 60, 536, 539, 762, 994, 1043
MflI	RGATCY	2 cut(s)	669, 687
MhlI	GDGCHC	1 cut(s)	1007
MluCI	AATT	6 cut(s)	118, 462, 466, 674, 898, 985
MlyI	GAGTC	2 cut(s)	842, 1069
MmeI	TCCRAC	1 cut(s)	415
MnlI	CCTC	5 cut(s)	460, 821, 959, 1004, 1050
MroXI	GAANNNNTTC	1 cut(s)	113
MseI	TTAA	4 cut(s)	216, 465, 722, 1023
MslI	CAYNNNNRTG	2 cut(s)	329, 416
MspI	CCGG	3 cut(s)	350, 772, 1072
MspR9I	CCNGG	2 cut(s)	494, 773
Mva1269I	GAATGC	1 cut(s)	263
MvaI	CCWGG	1 cut(s)	494
MvnI	CGCG	1 cut(s)	1054
MwoI	GCNNNNNNNGC	3 cut(s)	269, 710, 1060
NciI	CCSGG	1 cut(s)	773
NdeI	CATATG	1 cut(s)	153
NdeII	GATC	4 cut(s)	147, 669, 687, 955
NlaIII	CATG	5 cut(s)	246, 415, 421, 502, 606
NlaIV	GGNNCC	2 cut(s)	252, 1004
NmuCI	GTSAC	3 cut(s)	238, 401, 577
NsbI	TGCGCA	1 cut(s)	712
NspI	RCATGY	1 cut(s)	246
NspV	TTCGAA	1 cut(s)	228
PagI	TCATGA	1 cut(s)	411
PciI	ACATGT	1 cut(s)	242
PctI	GAATGC	1 cut(s)	263
PdmI	GAANNNNTTC	1 cut(s)	113
PfeI	GAWTC	4 cut(s)	168, 799, 928, 960
PflMI	CCANNNNNTGG	2 cut(s)	282, 499
PkrI	GCNGC	1 cut(s)	608
PleI	GAGTC	2 cut(s)	841, 1069
PpsI	GAGTC	2 cut(s)	841, 1069
PscI	ACATGT	1 cut(s)	242
PshBI	ATTAAT	1 cut(s)	465
Psp6I	CCWGG	1 cut(s)	492
PspFI	CCCAGC	1 cut(s)	779
PspGI	CCWGG	1 cut(s)	492
PspN4I	GGNNCC	2 cut(s)	252, 1004
PstNI	CAGNNNCTG	2 cut(s)	282, 761
PsuI	RGATCY	2 cut(s)	669, 687
RsaI	GTAC	2 cut(s)	30, 896
RsaNI	GTAC	2 cut(s)	29, 895
RseI	CAYNNNNRTG	2 cut(s)	329, 416
SaqAI	TTAA	4 cut(s)	216, 465, 722, 1023
SatI	GCNGC	1 cut(s)	607
Sau3AI	GATC	4 cut(s)	147, 669, 687, 955
SchI	GAGTC	2 cut(s)	842, 1069
ScrFI	CCNGG	2 cut(s)	494, 773
SduI	GDGCHC	1 cut(s)	1007
SexAI	ACCWGGT	1 cut(s)	492
SfaNI	GCATC	2 cut(s)	281, 321
SfcI	CTRYAG	1 cut(s)	870
SfuI	TTCGAA	1 cut(s)	228
SmiMI	CAYNNNNRTG	2 cut(s)	329, 416
SmlI	CTYRAG	1 cut(s)	537
SmoI	CTYRAG	1 cut(s)	537
Sse9I	AATT	6 cut(s)	118, 462, 466, 674, 898, 985
SsiI	CCGC	1 cut(s)	1054
SspI	AATATT	1 cut(s)	507
StyD4I	CCNGG	2 cut(s)	492, 771
StyI	CCWWGG	1 cut(s)	629
TaaI	ACNGT	2 cut(s)	487, 820
TaiI	ACGT	3 cut(s)	408, 569, 1052
TaqI	TCGA	2 cut(s)	228, 958
TasI	AATT	6 cut(s)	118, 462, 466, 674, 898, 985
TatI	WGTACW	2 cut(s)	28, 894
TfiI	GAWTC	4 cut(s)	168, 799, 928, 960
Tru1I	TTAA	4 cut(s)	216, 465, 722, 1023
Tru9I	TTAA	4 cut(s)	216, 465, 722, 1023
TscAI	CASTG	3 cut(s)	823, 850, 946
TseFI	GTSAC	3 cut(s)	238, 401, 577
TseI	GCWGC	1 cut(s)	606
Tsp45I	GTSAC	3 cut(s)	238, 401, 577
TspDTI	ATGAA	4 cut(s)	313, 400, 428, 1044
TspGWI	ACGGA	1 cut(s)	401
TspRI	CASTG	3 cut(s)	823, 850, 946
Van91I	CCANNNNNTGG	2 cut(s)	282, 499
VspI	ATTAAT	1 cut(s)	465
XapI	RAATTY	1 cut(s)	985
XceI	RCATGY	1 cut(s)	246
XmiI	GTMKAC	1 cut(s)	489
XmnI	GAANNNNTTC	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.