Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000351.1

Orthogroup ID

OG0007832

Physical Location & Seq

Genomic Coordinates Reverse (-)

47130 .. 50645

Gene Structure 3516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000351.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

atgtcaggcaagatgatcaacagaccgttgctactgacttatttttacctactgatctatgttctgctttcatctggagttatattgtacaacaagtgggttctgtctccgaaatacttcaattttccattgcccataacacttacgatgattcatatggggttttctggattggtagcattttttctcgttcgtgttttcaaggttgtagctcctgtcaaaatgacattcgaaatatatgcaacatgtgtaataccaataagtgccttctttgcttcaagtctttggtttggaaacacagcttacttgcatatttctgtggctttcatccaaatgctcaaagctctaatgccggtggctacttttatcatggctgttttatgtggcactgataaaccaaggtgcgacgtgttctcaaacatgttgctggtcagtgttggagttgtcgtttcctcgtacggggagattcattttaatgtagttggtacactttaccaggttacgggcatctttgcagaagcccttaggctggtcttaacacaagtccttttgcagaagaagggtttgactttaaatccaatcaccagcttatactatatagctccatgcagttttgtattcctgtctgtgccttggttattacttgagaagcctgcaatggaagtgtcacaaattcagttcaacttctggatctttttctccaatgctctatgtgctttggctttgaacttctccatattcttagtaattggtagaaccggagcagttactattcgagttgctggtgttttaaaagactggattttgattgccctttcaactgttatatttccagagtctatcataaccaggctgaacataattggttatgcaatagcattgtgtggtgtcgtcatgtacaactacataaaggttaaggatgtgcgtgcatctgcatctcagctgcctattgacactattccggacagaatctcgaaggtttattttctcaagaattcatttacttccctgacatgcgaatgttattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0012505 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

342

Amino Acids

38.26

Weight (kDa)

9.26

Isoelectric Point (pI)

28.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007832)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48230 AT1G48230 AT3G17430 AT3G17430
fragaria_vesca	FvH4_4g21460 FvH4_4g21460 FvH4_4g21460 FvH4_4g21460
malus_domestica	MD13G1141000.v1.1 MD16G1137100.v1.1
prunus_persica	Prupe.1G106200_v2.0.a1 Prupe.1G106200_v2.0.a1
pyrus_communis	pycom13g12250
rosa_chinensis	RchiOBHm_Chr4g0427391
rosa_laevigata	RLG00000007247
rosa_multiflora	Rmu_ssc0000351.1_g000008
rosa_roxburghii	Rroxscaffold_5G00369060
rosa_rugosa	Rorug04G0217700
rosa_samantha	Rh4AG273700 Rh4BG279300 Rh4CG294600 Rh4DG276800
rosa_wichuraiana	Rw4G023740 Rw4G023800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	961
AclWI	GGATC	1 cut(s)	698
AcsI	RAATTY	2 cut(s)	672, 994
AfaI	GTAC	4 cut(s)	89, 458, 487, 899
AfiI	CCNNNNNNNGG	3 cut(s)	459, 502, 529
AflIII	ACRYGT	3 cut(s)	245, 408, 420
AgsI	TTSAA	6 cut(s)	121, 202, 279, 682, 727, 819
AjiI	CACGTC	1 cut(s)	409
AjnI	CCWGG	2 cut(s)	495, 848
AluBI	AGCT	6 cut(s)	212, 302, 344, 588, 602, 943
AluI	AGCT	6 cut(s)	212, 302, 344, 588, 602, 943
Alw26I	GTCTC	1 cut(s)	111
AlwI	GGATC	1 cut(s)	698
Aor13HI	TCCGGA	1 cut(s)	961
ApeKI	GCWGC	1 cut(s)	943
ApoI	RAATTY	2 cut(s)	672, 994
Asp700I	GAANNNNTTC	1 cut(s)	116
AsuHPI	GGTGA	1 cut(s)	574
AsuII	TTCGAA	1 cut(s)	231
AxyI	CCTNAGG	1 cut(s)	524
BbvI	GCAGC	1 cut(s)	930
BcgI	CGANNNNNNTGC	2 cut(s)	221, 255
BciT130I	CCWGG	2 cut(s)	497, 850
BclI	TGATCA	1 cut(s)	15
BcoDI	GTCTC	1 cut(s)	111
BisI	GCNGC	1 cut(s)	944
BlsI	GCNGC	1 cut(s)	945
Bme1390I	CCNGG	2 cut(s)	497, 850
BmgBI	CACGTC	1 cut(s)	409
BmrFI	CCNGG	2 cut(s)	497, 850
BmsI	GCATC	3 cut(s)	516, 938, 944
BpmI	CTGGAG	1 cut(s)	96
Bpu14I	TTCGAA	1 cut(s)	231
BpuEI	CTTGAG	2 cut(s)	665, 974
BsaJI	CCNNGG	2 cut(s)	398, 632
BsaWI	WCCGGW	2 cut(s)	758, 961
BsaXI	ACNNNNNCTCC	2 cut(s)	432, 462
Bsc4I	CCNNNNNNNGG	3 cut(s)	459, 502, 529
Bse118I	RCCGGY	1 cut(s)	352
Bse1I	ACTGG	1 cut(s)	803
Bse21I	CCTNAGG	1 cut(s)	524
Bse3DI	GCAATG	2 cut(s)	128, 663
BseAI	TCCGGA	1 cut(s)	961
BseBI	CCWGG	2 cut(s)	497, 850
BseDI	CCNNGG	2 cut(s)	398, 632
BseGI	GGATG	2 cut(s)	327, 925
BseLI	CCNNNNNNNGG	3 cut(s)	459, 502, 529
BseMI	GCAATG	2 cut(s)	128, 663
BseMII	CTCAG	1 cut(s)	953
BseNI	ACTGG	1 cut(s)	803
BseXI	GCAGC	1 cut(s)	930
BsiSI	CCGG	3 cut(s)	353, 759, 962
BsiWI	CGTACG	1 cut(s)	456
BslI	CCNNNNNNNGG	3 cut(s)	459, 502, 529
BsmAI	GTCTC	1 cut(s)	111
Bsp119I	TTCGAA	1 cut(s)	231
Bsp13I	TCCGGA	1 cut(s)	961
Bsp1407I	TGTACA	2 cut(s)	87, 897
Bsp143I	GATC	3 cut(s)	15, 54, 690
BspCNI	CTCAG	1 cut(s)	952
BspEI	TCCGGA	1 cut(s)	961
BspPI	GGATC	1 cut(s)	698
BspT104I	TTCGAA	1 cut(s)	231
BsrDI	GCAATG	2 cut(s)	128, 663
BsrFI	RCCGGY	1 cut(s)	352
BsrGI	TGTACA	2 cut(s)	87, 897
BsrI	ACTGG	1 cut(s)	803
BssAI	RCCGGY	1 cut(s)	352
BssECI	CCNNGG	2 cut(s)	398, 632
BssMI	GATC	3 cut(s)	15, 54, 690
BssT1I	CCWWGG	2 cut(s)	398, 632
Bst2UI	CCWGG	2 cut(s)	497, 850
Bst4CI	ACNGT	2 cut(s)	27, 823
BstAUI	TGTACA	2 cut(s)	87, 897
BstBI	TTCGAA	1 cut(s)	231
BstC8I	GCNNGC	2 cut(s)	654, 927
BstDEI	CTNAG	3 cut(s)	524, 742, 939
BstF5I	GGATG	2 cut(s)	327, 925
BstKTI	GATC	3 cut(s)	18, 57, 693
BstMAI	GTCTC	1 cut(s)	111
BstMBI	GATC	3 cut(s)	15, 54, 690
BstMWI	GCNNNNNNNGC	2 cut(s)	272, 713
BstNI	CCWGG	2 cut(s)	497, 850
BstNSI	RCATGY	3 cut(s)	249, 424, 1017
BstSCI	CCNGG	2 cut(s)	495, 848
BstV1I	GCAGC	1 cut(s)	930
BstX2I	RGATCY	1 cut(s)	690
BstYI	RGATCY	1 cut(s)	690
Bsu36I	CCTNAGG	1 cut(s)	524
BtrI	CACGTC	1 cut(s)	409
BtsCI	GGATG	2 cut(s)	327, 925
BtsIMutI	CAGTG	2 cut(s)	387, 439
Cac8I	GCNNGC	2 cut(s)	654, 927
Cfr10I	RCCGGY	1 cut(s)	352
CsiI	ACCWGGT	1 cut(s)	495
Csp6I	GTAC	4 cut(s)	88, 457, 486, 898
CviAII	CATG	6 cut(s)	246, 370, 421, 606, 895, 1014
CviQI	GTAC	4 cut(s)	88, 457, 486, 898
DdeI	CTNAG	3 cut(s)	524, 742, 939
DpnI	GATC	3 cut(s)	17, 56, 692
DpnII	GATC	3 cut(s)	15, 54, 690
DraI	TTTAAA	2 cut(s)	573, 792
Eco130I	CCWWGG	2 cut(s)	398, 632
Eco81I	CCTNAGG	1 cut(s)	524
EcoRI	GAATTC	1 cut(s)	994
EcoRII	CCWGG	2 cut(s)	495, 848
EcoT14I	CCWWGG	2 cut(s)	398, 632
ErhI	CCWWGG	2 cut(s)	398, 632
FaeI	CATG	6 cut(s)	249, 373, 424, 609, 898, 1017
FatI	CATG	6 cut(s)	245, 369, 420, 605, 894, 1013
FauNDI	CATATG	1 cut(s)	156
FbaI	TGATCA	1 cut(s)	15
Fnu4HI	GCNGC	1 cut(s)	944
FokI	GGATG	2 cut(s)	314, 932
Fsp4HI	GCNGC	1 cut(s)	944
GluI	GCNGC	1 cut(s)	944
GsuI	CTGGAG	1 cut(s)	96
HapII	CCGG	3 cut(s)	353, 759, 962
Hin1II	CATG	6 cut(s)	249, 373, 424, 609, 898, 1017
HinfI	GANTC	4 cut(s)	151, 466, 836, 969
HpaII	CCGG	3 cut(s)	353, 759, 962
HphI	GGTGA	1 cut(s)	574
Hpy166II	GTNNAC	1 cut(s)	488
Hpy188I	TCNGA	1 cut(s)	111
Hpy188III	TCNNGA	7 cut(s)	75, 168, 688, 833, 962, 973, 991
Hpy8I	GTNNAC	1 cut(s)	488
Hpy99I	CGWCG	1 cut(s)	410
HpyAV	CCTTC	3 cut(s)	277, 553, 970
HpyCH4III	ACNGT	2 cut(s)	27, 823
HpyCH4IV	ACGT	1 cut(s)	408
HpyCH4V	TGCA	9 cut(s)	242, 310, 515, 553, 609, 656, 872, 929, 935
HpyF10VI	GCNNNNNNNGC	2 cut(s)	272, 713
HpyF3I	CTNAG	3 cut(s)	524, 742, 939
HpySE526I	ACGT	1 cut(s)	408
Hsp92II	CATG	6 cut(s)	249, 373, 424, 609, 898, 1017
Kpn2I	TCCGGA	1 cut(s)	961
Ksp22I	TGATCA	1 cut(s)	15
Kzo9I	GATC	3 cut(s)	15, 54, 690
LmnI	GCTCC	3 cut(s)	217, 607, 761
Lsp1109I	GCAGC	1 cut(s)	930
LweI	GCATC	3 cut(s)	516, 938, 944
MabI	ACCWGGT	1 cut(s)	495
MaeII	ACGT	1 cut(s)	408
MaeIII	GTNAC	3 cut(s)	499, 666, 766
MalI	GATC	3 cut(s)	17, 56, 692
MboI	GATC	3 cut(s)	15, 54, 690
MboII	GAAGA	1 cut(s)	568
MflI	RGATCY	1 cut(s)	690
MluCI	AATT	5 cut(s)	121, 672, 747, 861, 994
MlyI	GAGTC	1 cut(s)	845
MmeI	TCCRAC	1 cut(s)	418
MnlI	CCTC	1 cut(s)	463
MroI	TCCGGA	1 cut(s)	961
MroXI	GAANNNNTTC	1 cut(s)	116
MseI	TTAA	6 cut(s)	474, 536, 572, 791, 915, 1027
MslI	CAYNNNNRTG	3 cut(s)	332, 474, 1018
MspA1I	CMGCKG	1 cut(s)	943
MspI	CCGG	3 cut(s)	353, 759, 962
MspR9I	CCNGG	2 cut(s)	497, 850
MvaI	CCWGG	2 cut(s)	497, 850
MwoI	GCNNNNNNNGC	2 cut(s)	272, 713
NdeI	CATATG	1 cut(s)	156
NdeII	GATC	3 cut(s)	15, 54, 690
NlaIII	CATG	6 cut(s)	249, 373, 424, 609, 898, 1017
NmuCI	GTSAC	1 cut(s)	666
NspI	RCATGY	3 cut(s)	249, 424, 1017
NspV	TTCGAA	1 cut(s)	231
PciI	ACATGT	2 cut(s)	245, 420
PdmI	GAANNNNTTC	1 cut(s)	116
PfeI	GAWTC	3 cut(s)	151, 466, 969
Pfl23II	CGTACG	1 cut(s)	456
PkrI	GCNGC	1 cut(s)	945
PleI	GAGTC	1 cut(s)	844
PpsI	GAGTC	1 cut(s)	844
PscI	ACATGT	2 cut(s)	245, 420
Psp6I	CCWGG	2 cut(s)	495, 848
PspGI	CCWGG	2 cut(s)	495, 848
PspLI	CGTACG	1 cut(s)	456
PsuI	RGATCY	1 cut(s)	690
PvuII	CAGCTG	1 cut(s)	943
RsaI	GTAC	4 cut(s)	89, 458, 487, 899
RsaNI	GTAC	4 cut(s)	88, 457, 486, 898
RseI	CAYNNNNRTG	3 cut(s)	332, 474, 1018
SaqAI	TTAA	6 cut(s)	474, 536, 572, 791, 915, 1027
SatI	GCNGC	1 cut(s)	944
Sau3AI	GATC	3 cut(s)	15, 54, 690
SchI	GAGTC	1 cut(s)	845
ScrFI	CCNGG	2 cut(s)	497, 850
SexAI	ACCWGGT	1 cut(s)	495
SfaNI	GCATC	3 cut(s)	516, 938, 944
SfuI	TTCGAA	1 cut(s)	231
SmiMI	CAYNNNNRTG	3 cut(s)	332, 474, 1018
SmlI	CTYRAG	2 cut(s)	644, 989
SmoI	CTYRAG	2 cut(s)	644, 989
Sse9I	AATT	5 cut(s)	121, 672, 747, 861, 994
StyD4I	CCNGG	2 cut(s)	495, 848
StyI	CCWWGG	2 cut(s)	398, 632
TaaI	ACNGT	2 cut(s)	27, 823
TaiI	ACGT	1 cut(s)	411
TaqI	TCGA	3 cut(s)	231, 775, 974
TasI	AATT	5 cut(s)	121, 672, 747, 861, 994
TatI	WGTACW	2 cut(s)	87, 897
TfiI	GAWTC	3 cut(s)	151, 466, 969
Tru1I	TTAA	6 cut(s)	474, 536, 572, 791, 915, 1027
Tru9I	TTAA	6 cut(s)	474, 536, 572, 791, 915, 1027
TscAI	CASTG	2 cut(s)	394, 439
TseFI	GTSAC	1 cut(s)	666
TseI	GCWGC	1 cut(s)	943
Tsp45I	GTSAC	1 cut(s)	666
TspDTI	ATGAA	5 cut(s)	60, 143, 316, 458, 987
TspRI	CASTG	2 cut(s)	394, 439
XapI	RAATTY	2 cut(s)	672, 994
XceI	RCATGY	3 cut(s)	249, 424, 1017
XmnI	GAANNNNTTC	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.