Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0007832

Physical Location & Seq

Genomic Coordinates Reverse (-)

8508289 .. 8513237

Gene Structure 4949 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G106200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGTCCAAGATGATCAGCAAACCGCTGGTACTGACTTATTTCTACCTGTTCATGTACATTCTGCTTTCGTCAGGTGTTATATTGTACAACAAGTGGGTTCTGTCTCCAAAATACTTCAATTTTCCATTACCCATAACACTTACGATGATTCATATGGGATTTTCTGGACTCGTAGCATTTTTACTTGTTCGTGTTTTCAAGGTTGTAGCTCCTGTCAAAATGACATTTGAAATATATGCAACTTGTGTAATACCAATCAGTGCCTTCTTTGCATCAAGTCTTTGGTTTGGAAACACTGCTTACTTGCATATTTCTGTGGCGTTCATCCAAATGCTCAAAGCCTTAATGCCAGTGGCTACTTTTATCATGGCTGTTTTGTGTGGCACTGACAAACCAAGGTGCGACGTGTTCTCAAACATGGTGCTGGTCAGTGTTGGAGTTGTCATTTCCTCATATGGGGAGATTCATTTTAACGTAGTTGGTACAGTTTACCAGGTTACGGGCATCTTTGCAGAGGCTCTTAGGCTGGTCTTAACACAAGTCCTTCTCCAGAAGAAGGGCTTGACTCTAAATCCGATCACCAGCTTATACTATATTGCTCCATGCAGCTTTGTCTTCCTGTCTGTGCCCTGGTTATTACTTGAGAAGTCTTCCATGGAAGTTTCACAGATTCAGTTCAACTTCTGGATATTTTTCTCCAATGCTCTTTGTGCTTTGGCGTTGAACTTCTCCATTTTCTTAGTAATTGGTAGAACTGGAGCAGTTACCATCCGGGTTGCTGGTGTTCTAAAAGACTGGATATTGATTGCCCTTTCAACTGTTATATTTCCAGAGTCCATGATTACCAGGCTGAACATAATTGGTTATGCCATAGCATTGTGTGGTGTTGTCATGTACAACTATATAAAGGTTAAGGATGTTCGTGCATCTCAACTACCTTCTGAAAGTATTCCGGAGAGAATTTCAAAGGATTGGAAGTTGGAGAAAAAGTCATCTGATATTTTTGTCCCTAACAACAGTGGATCAGCCTCCGATATCGATGTCGATGAAGAGACACCCCTAACTCAATCAACAAGGCTGTCTCATATTGGACGATCGCAGGTTGGCAACCATGGTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0012505 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

374

Amino Acids

41.51

Weight (kDa)

9.11

Isoelectric Point (pI)

34.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007832)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48230 AT1G48230 AT3G17430 AT3G17430
fragaria_vesca	FvH4_4g21460 FvH4_4g21460 FvH4_4g21460 FvH4_4g21460
malus_domestica	MD13G1141000.v1.1 MD16G1137100.v1.1
prunus_persica	Prupe.1G106200_v2.0.a1 Prupe.1G106200_v2.0.a1
pyrus_communis	pycom13g12250
rosa_chinensis	RchiOBHm_Chr4g0427391
rosa_laevigata	RLG00000007247
rosa_multiflora	Rmu_ssc0000351.1_g000008
rosa_roxburghii	Rroxscaffold_5G00369060
rosa_rugosa	Rorug04G0217700
rosa_samantha	Rh4AG273700 Rh4BG279300 Rh4CG294600 Rh4DG276800
rosa_wichuraiana	Rw4G023740 Rw4G023800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1090
AccIII	TCCGGA	1 cut(s)	952
AciI	CCGC	1 cut(s)	23
AclWI	GGATC	1 cut(s)	1030
AcsI	RAATTY	1 cut(s)	960
AfaI	GTAC	5 cut(s)	30, 56, 86, 484, 896
AfiI	CCNNNNNNNGG	3 cut(s)	456, 499, 556
AflIII	ACRYGT	1 cut(s)	405
AgsI	TTSAA	7 cut(s)	118, 199, 230, 679, 724, 816, 966
AjiI	CACGTC	1 cut(s)	406
AjnI	CCWGG	3 cut(s)	492, 629, 845
AluBI	AGCT	3 cut(s)	209, 585, 609
AluI	AGCT	3 cut(s)	209, 585, 609
Alw26I	GTCTC	3 cut(s)	108, 1046, 1086
AlwI	GGATC	1 cut(s)	1030
Aor13HI	TCCGGA	1 cut(s)	952
ApeKI	GCWGC	1 cut(s)	606
ApoI	RAATTY	1 cut(s)	960
Asp700I	GAANNNNTTC	1 cut(s)	948
AsuC2I	CCSGG	1 cut(s)	773
AsuHPI	GGTGA	1 cut(s)	571
BaeGI	GKGCMC	1 cut(s)	630
BbsI	GAAGAC	2 cut(s)	607, 642
BbvI	GCAGC	1 cut(s)	618
BccI	CCATC	1 cut(s)	776
BciT130I	CCWGG	3 cut(s)	494, 631, 847
BclI	TGATCA	1 cut(s)	12
BcnI	CCSGG	1 cut(s)	773
BcoDI	GTCTC	3 cut(s)	108, 1046, 1086
BfuAI	ACCTGC	1 cut(s)	1090
BisI	GCNGC	1 cut(s)	607
BlsI	GCNGC	1 cut(s)	608
Bme1390I	CCNGG	4 cut(s)	494, 631, 773, 847
BmgBI	CACGTC	1 cut(s)	406
BmrFI	CCNGG	4 cut(s)	494, 631, 773, 847
BmsI	GCATC	3 cut(s)	281, 513, 935
BpiI	GAAGAC	2 cut(s)	607, 642
BpmI	CTGGAG	2 cut(s)	533, 777
BpuEI	CTTGAG	1 cut(s)	662
BpuMI	CCSGG	1 cut(s)	773
Bsa29I	ATCGAT	1 cut(s)	1038
BsaJI	CCNNGG	4 cut(s)	395, 629, 654, 1111
BsaWI	WCCGGW	1 cut(s)	952
BsaXI	ACNNNNNCTCC	2 cut(s)	974, 1004
Bsc4I	CCNNNNNNNGG	3 cut(s)	456, 499, 556
Bse1I	ACTGG	3 cut(s)	350, 760, 800
BseAI	TCCGGA	1 cut(s)	952
BseBI	CCWGG	3 cut(s)	494, 631, 847
BseCI	ATCGAT	1 cut(s)	1038
BseDI	CCNNGG	4 cut(s)	395, 629, 654, 1111
BseGI	GGATG	3 cut(s)	324, 768, 922
BseLI	CCNNNNNNNGG	3 cut(s)	456, 499, 556
BseNI	ACTGG	3 cut(s)	350, 760, 800
BseSI	GKGCMC	1 cut(s)	630
BseXI	GCAGC	1 cut(s)	618
Bsh1285I	CGRYCG	1 cut(s)	1097
BshVI	ATCGAT	1 cut(s)	1038
BsiEI	CGRYCG	1 cut(s)	1097
BsiSI	CCGG	2 cut(s)	772, 953
BslFI	GGGAC	1 cut(s)	992
BslI	CCNNNNNNNGG	3 cut(s)	456, 499, 556
BsmAI	GTCTC	3 cut(s)	108, 1046, 1086
BsmFI	GGGAC	1 cut(s)	992
Bsp1286I	GDGCHC	1 cut(s)	630
Bsp13I	TCCGGA	1 cut(s)	952
Bsp1407I	TGTACA	3 cut(s)	54, 84, 894
Bsp143I	GATC	4 cut(s)	12, 576, 1022, 1094
Bsp19I	CCATGG	2 cut(s)	654, 1111
BspACI	CCGC	1 cut(s)	23
BspDI	ATCGAT	1 cut(s)	1038
BspEI	TCCGGA	1 cut(s)	952
BspMI	ACCTGC	1 cut(s)	1090
BspPI	GGATC	1 cut(s)	1030
BsrGI	TGTACA	3 cut(s)	54, 84, 894
BsrI	ACTGG	3 cut(s)	350, 760, 800
BssECI	CCNNGG	4 cut(s)	395, 629, 654, 1111
BssMI	GATC	4 cut(s)	12, 576, 1022, 1094
BssT1I	CCWWGG	3 cut(s)	395, 654, 1111
Bst2UI	CCWGG	3 cut(s)	494, 631, 847
Bst4CI	ACNGT	3 cut(s)	487, 820, 1019
Bst6I	CTCTTC	1 cut(s)	1044
BstAUI	TGTACA	3 cut(s)	54, 84, 894
BstDEI	CTNAG	2 cut(s)	521, 739
BstDSI	CCRYGG	2 cut(s)	654, 1111
BstF5I	GGATG	3 cut(s)	324, 768, 922
BstKTI	GATC	4 cut(s)	15, 579, 1025, 1097
BstMAI	GTCTC	3 cut(s)	108, 1046, 1086
BstMBI	GATC	4 cut(s)	12, 576, 1022, 1094
BstMCI	CGRYCG	1 cut(s)	1097
BstMWI	GCNNNNNNNGC	2 cut(s)	269, 710
BstNI	CCWGG	3 cut(s)	494, 631, 847
BstSCI	CCNGG	4 cut(s)	492, 629, 771, 845
BstSLI	GKGCMC	1 cut(s)	630
BstV1I	GCAGC	1 cut(s)	618
BstV2I	GAAGAC	2 cut(s)	607, 642
Bsu15I	ATCGAT	1 cut(s)	1038
BsuTUI	ATCGAT	1 cut(s)	1038
BtgI	CCRYGG	2 cut(s)	654, 1111
BtrI	CACGTC	1 cut(s)	406
BtsCI	GGATG	3 cut(s)	324, 768, 922
BtsI	GCAGTG	1 cut(s)	294
BtsIMutI	CAGTG	6 cut(s)	265, 294, 357, 384, 436, 1024
BveI	ACCTGC	1 cut(s)	1090
ClaI	ATCGAT	1 cut(s)	1038
CsiI	ACCWGGT	1 cut(s)	492
Csp6I	GTAC	5 cut(s)	29, 55, 85, 483, 895
CviAII	CATG	9 cut(s)	52, 367, 418, 603, 655, 838, 892, 1112, 1119
CviQI	GTAC	5 cut(s)	29, 55, 85, 483, 895
DdeI	CTNAG	2 cut(s)	521, 739
DpnI	GATC	4 cut(s)	14, 578, 1024, 1096
DpnII	GATC	4 cut(s)	12, 576, 1022, 1094
Eam1104I	CTCTTC	1 cut(s)	1044
EarI	CTCTTC	1 cut(s)	1044
Eco130I	CCWWGG	3 cut(s)	395, 654, 1111
Eco32I	GATATC	1 cut(s)	1036
EcoRII	CCWGG	3 cut(s)	492, 629, 845
EcoRV	GATATC	1 cut(s)	1036
EcoT14I	CCWWGG	3 cut(s)	395, 654, 1111
ErhI	CCWWGG	3 cut(s)	395, 654, 1111
FaeI	CATG	9 cut(s)	55, 370, 421, 606, 658, 841, 895, 1115, 1122
FalI	AAGNNNNNCTT	2 cut(s)	545, 577
FaqI	GGGAC	1 cut(s)	992
FatI	CATG	9 cut(s)	51, 366, 417, 602, 654, 837, 891, 1111, 1118
FauNDI	CATATG	2 cut(s)	153, 454
FbaI	TGATCA	1 cut(s)	12
Fnu4HI	GCNGC	1 cut(s)	607
FokI	GGATG	3 cut(s)	311, 755, 929
Fsp4HI	GCNGC	1 cut(s)	607
GluI	GCNGC	1 cut(s)	607
GsuI	CTGGAG	2 cut(s)	533, 777
HapII	CCGG	2 cut(s)	772, 953
Hin1II	CATG	9 cut(s)	55, 370, 421, 606, 658, 841, 895, 1115, 1122
HinfI	GANTC	6 cut(s)	148, 168, 463, 565, 670, 833
HpaII	CCGG	2 cut(s)	772, 953
HphI	GGTGA	1 cut(s)	571
Hpy166II	GTNNAC	1 cut(s)	490
Hpy188I	TCNGA	4 cut(s)	576, 943, 997, 1033
Hpy188III	TCNNGA	5 cut(s)	165, 550, 685, 830, 953
Hpy8I	GTNNAC	1 cut(s)	490
Hpy99I	CGWCG	1 cut(s)	407
HpyAV	CCTTC	4 cut(s)	274, 550, 554, 948
HpyCH4III	ACNGT	3 cut(s)	487, 820, 1019
HpyCH4IV	ACGT	2 cut(s)	405, 474
HpyCH4V	TGCA	7 cut(s)	239, 272, 307, 512, 606, 926, 1118
HpyF10VI	GCNNNNNNNGC	2 cut(s)	269, 710
HpyF3I	CTNAG	2 cut(s)	521, 739
HpySE526I	ACGT	2 cut(s)	405, 474
Hsp92II	CATG	9 cut(s)	55, 370, 421, 606, 658, 841, 895, 1115, 1122
Kpn2I	TCCGGA	1 cut(s)	952
Ksp22I	TGATCA	1 cut(s)	12
Kzo9I	GATC	4 cut(s)	12, 576, 1022, 1094
LmnI	GCTCC	3 cut(s)	214, 604, 758
Lsp1109I	GCAGC	1 cut(s)	618
LweI	GCATC	3 cut(s)	281, 513, 935
MabI	ACCWGGT	1 cut(s)	492
MaeII	ACGT	2 cut(s)	405, 474
MaeIII	GTNAC	2 cut(s)	496, 763
MalI	GATC	4 cut(s)	14, 578, 1024, 1096
MboI	GATC	4 cut(s)	12, 576, 1022, 1094
MboII	GAAGA	4 cut(s)	565, 607, 642, 1061
MhlI	GDGCHC	1 cut(s)	630
MluCI	AATT	4 cut(s)	118, 744, 858, 960
MlyI	GAGTC	3 cut(s)	162, 559, 842
MmeI	TCCRAC	2 cut(s)	415, 960
MnlI	CCTC	3 cut(s)	460, 508, 1039
MroI	TCCGGA	1 cut(s)	952
MroXI	GAANNNNTTC	1 cut(s)	948
MseI	TTAA	4 cut(s)	344, 471, 533, 912
MslI	CAYNNNNRTG	1 cut(s)	329
MspA1I	CMGCKG	1 cut(s)	25
MspI	CCGG	2 cut(s)	772, 953
MspR9I	CCNGG	4 cut(s)	494, 631, 773, 847
MvaI	CCWGG	3 cut(s)	494, 631, 847
MwoI	GCNNNNNNNGC	2 cut(s)	269, 710
NciI	CCSGG	1 cut(s)	773
NcoI	CCATGG	2 cut(s)	654, 1111
NdeI	CATATG	2 cut(s)	153, 454
NdeII	GATC	4 cut(s)	12, 576, 1022, 1094
NlaIII	CATG	9 cut(s)	55, 370, 421, 606, 658, 841, 895, 1115, 1122
PdmI	GAANNNNTTC	1 cut(s)	948
PfeI	GAWTC	3 cut(s)	148, 463, 670
PkrI	GCNGC	1 cut(s)	608
Ple19I	CGATCG	1 cut(s)	1097
PleI	GAGTC	3 cut(s)	162, 559, 841
PpsI	GAGTC	3 cut(s)	162, 559, 841
Psp6I	CCWGG	3 cut(s)	492, 629, 845
PspGI	CCWGG	3 cut(s)	492, 629, 845
PvuI	CGATCG	1 cut(s)	1097
RsaI	GTAC	5 cut(s)	30, 56, 86, 484, 896
RsaNI	GTAC	5 cut(s)	29, 55, 85, 483, 895
RseI	CAYNNNNRTG	1 cut(s)	329
SaqAI	TTAA	4 cut(s)	344, 471, 533, 912
SatI	GCNGC	1 cut(s)	607
Sau3AI	GATC	4 cut(s)	12, 576, 1022, 1094
SchI	GAGTC	3 cut(s)	162, 559, 842
ScrFI	CCNGG	4 cut(s)	494, 631, 773, 847
SduI	GDGCHC	1 cut(s)	630
SexAI	ACCWGGT	1 cut(s)	492
SfaNI	GCATC	3 cut(s)	281, 513, 935
SmiMI	CAYNNNNRTG	1 cut(s)	329
SmlI	CTYRAG	1 cut(s)	641
SmoI	CTYRAG	1 cut(s)	641
Sse9I	AATT	4 cut(s)	118, 744, 858, 960
SsiI	CCGC	1 cut(s)	23
StyD4I	CCNGG	4 cut(s)	492, 629, 771, 845
StyI	CCWWGG	3 cut(s)	395, 654, 1111
TaaI	ACNGT	3 cut(s)	487, 820, 1019
TaiI	ACGT	2 cut(s)	408, 477
TaqI	TCGA	2 cut(s)	1038, 1044
TasI	AATT	4 cut(s)	118, 744, 858, 960
TatI	WGTACW	3 cut(s)	54, 84, 894
TfiI	GAWTC	3 cut(s)	148, 463, 670
Tru1I	TTAA	4 cut(s)	344, 471, 533, 912
Tru9I	TTAA	4 cut(s)	344, 471, 533, 912
TscAI	CASTG	6 cut(s)	265, 301, 357, 391, 436, 1024
TseI	GCWGC	1 cut(s)	606
TspDTI	ATGAA	5 cut(s)	40, 140, 313, 455, 1062
TspRI	CASTG	6 cut(s)	265, 301, 357, 391, 436, 1024
XapI	RAATTY	1 cut(s)	960
XmnI	GAANNNNTTC	1 cut(s)	948

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.