FvH4_4g21460

sugar phosphate phosphate translocator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0007832
Physical Location & Seq
Forward (+)
24525062 .. 24530288
5227 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g21460.t3

Sequence Viewer

Length: 1134 bp
ATGTCAGGCAAGATGATCAACAGACCGTTGCTACTGACTTATTTTTACCTACTGATGTATGTTCTGCTTTCGTCTGGAGTTATATTATACAACAAGTGGGTTCTGTCTCCGAAATACTTCAATTTTCCATTGCCCATAACACTTACGATGATTCATATGGGGTTTTCTGGATTGGTAGCATTTTTTCTTGTTCGTGTTTTCAAGGTTGTAGCTCCTGTCAAAATGACATTCGAAATATATGCAACGTGTGTAATACCAATAAGTGCTTTCTTTGCTTCAAGTCTTTGGTTTGGAAACACTGCTTACTTGCATATTTCTGTGGCCTTCATCCAAATGCTCAAAGCTCTAATGCCTGTGGCTACTTTCATCATGGCTGTTTTATGTGGCACTGATAAACCAAGGTGCGACGTGTTCTCAAACATGTTGCTGGTCAGTGTTGGAGTTGTCGTTTCCTCGTACGGGGAGATTCATTTTAACGTAGTTGGTACACTTTACCAGGTTACGGGCATCTTTGCAGAAGCCCTTAGGCTGGTCTTAACACAAGTCCTTCTGCAGAAGAAGGGTTTGACTTTAAATCCAATCACCAGCTTATACTACATAGCTCCATGCAGTTTTGTATTCCTGTCCGTGCCTTGGTTATTACTTGAGAAGCCTGCTATGGAAGTTTCACAAATTCAGTTCAACTTCTGGATATTTTTCTCGAATGCTCTATGTGCTTTGGCTTTGAACTTCTCCATATTCTTAGTAATCGGTAGAACTGGAGCAGTTACCATCCGAGTTGCTGGTGTTTTAAAAGACTGGATTTTGATTGCCCTTTCAACTGTTATATTTCCAGAGTCTATCATAACCAGGCTGAACATAATTGGTTATGCAATAGCGTTGTGTGGTGTTGTTATGTACAACTACATAAAGGTTAAGGATGTGCGTGCAACTGCATCTCAGCTGCCTATTGATGCTATTCCAGAGAGAATCTCAAAGGATTGGAAGTTGGAGAAAAAGTCTTCTGATATTTATGTGCCTAATAACGGAGGGGGTTTATCCTCTGATATGAATGTGGATGAAGAAACACCCCTAACTCAATCATCAAGGTTGTCTCATGTGGGACGTTCATCAATTGGCAGCCATGGTGCATGA

Protein Analysis

378

Amino Acids

41.8

Weight (kDa)

9.19

Isoelectric Point (pI)

33.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 15 - 301 9.9e-24 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 672
AfaI GTAC 3 cut(s) 458, 487, 899
AfiI CCNNNNNNNGG 5 cut(s) 459, 502, 529, 633, 1025
AflIII ACRYGT 3 cut(s) 245, 408, 420
AgsI TTSAA 6 cut(s) 121, 202, 279, 682, 727, 819
AjiI CACGTC 1 cut(s) 409
AjnI CCWGG 2 cut(s) 495, 848
AluBI AGCT 5 cut(s) 212, 344, 588, 602, 943
AluI AGCT 5 cut(s) 212, 344, 588, 602, 943
Alw26I GTCTC 2 cut(s) 111, 1098
AoxI GGCC 1 cut(s) 321
ApeKI GCWGC 2 cut(s) 943, 1119
ApoI RAATTY 1 cut(s) 672
Asp700I GAANNNNTTC 1 cut(s) 116
AsuHPI GGTGA 1 cut(s) 574
AsuII TTCGAA 1 cut(s) 231
AxyI CCTNAGG 1 cut(s) 524
BbsI GAAGAC 1 cut(s) 993
BbvI GCAGC 1 cut(s) 930
BccI CCATC 1 cut(s) 779
BcgI CGANNNNNNTGC 2 cut(s) 221, 255
BciT130I CCWGG 2 cut(s) 497, 850
BclI TGATCA 1 cut(s) 15
BcoDI GTCTC 2 cut(s) 111, 1098
BfmI CTRYAG 1 cut(s) 551
BisI GCNGC 2 cut(s) 944, 1120
BlsI GCNGC 2 cut(s) 945, 1121
Bme1390I CCNGG 2 cut(s) 497, 850
BmgBI CACGTC 1 cut(s) 409
BmrFI CCNGG 2 cut(s) 497, 850
BmsI GCATC 3 cut(s) 516, 943, 944
BpiI GAAGAC 1 cut(s) 993
BplI GAGNNNNNCTC 2 cut(s) 956, 988
BpmI CTGGAG 2 cut(s) 96, 780
Bpu14I TTCGAA 1 cut(s) 231
BpuEI CTTGAG 1 cut(s) 665
BsaJI CCNNGG 3 cut(s) 398, 632, 1123
BsaXI ACNNNNNCTCC 4 cut(s) 432, 462, 983, 1013
Bsc4I CCNNNNNNNGG 5 cut(s) 459, 502, 529, 633, 1025
Bse1I ACTGG 2 cut(s) 763, 803
Bse21I CCTNAGG 1 cut(s) 524
Bse3DI GCAATG 1 cut(s) 128
BseBI CCWGG 2 cut(s) 497, 850
BseDI CCNNGG 3 cut(s) 398, 632, 1123
BseGI GGATG 4 cut(s) 327, 771, 925, 1063
BseLI CCNNNNNNNGG 5 cut(s) 459, 502, 529, 633, 1025
BseMI GCAATG 1 cut(s) 128
BseMII CTCAG 1 cut(s) 953
BseNI ACTGG 2 cut(s) 763, 803
BseXI GCAGC 1 cut(s) 930
BshFI GGCC 1 cut(s) 323
BsiWI CGTACG 1 cut(s) 456
BslFI GGGAC 1 cut(s) 1116
BslI CCNNNNNNNGG 5 cut(s) 459, 502, 529, 633, 1025
BsmAI GTCTC 2 cut(s) 111, 1098
BsmFI GGGAC 1 cut(s) 1116
BsmI GAATGC 1 cut(s) 709
BsnI GGCC 1 cut(s) 323
Bsp119I TTCGAA 1 cut(s) 231
Bsp1407I TGTACA 1 cut(s) 897
Bsp143I GATC 1 cut(s) 15
Bsp19I CCATGG 1 cut(s) 1123
BspANI GGCC 1 cut(s) 323
BspCNI CTCAG 1 cut(s) 952
BspMAI CTGCAG 1 cut(s) 555
BspT104I TTCGAA 1 cut(s) 231
BsrDI GCAATG 1 cut(s) 128
BsrGI TGTACA 1 cut(s) 897
BsrI ACTGG 2 cut(s) 763, 803
BssECI CCNNGG 3 cut(s) 398, 632, 1123
BssMI GATC 1 cut(s) 15
BssT1I CCWWGG 3 cut(s) 398, 632, 1123
Bst2UI CCWGG 2 cut(s) 497, 850
Bst4CI ACNGT 2 cut(s) 27, 823
BstAUI TGTACA 1 cut(s) 897
BstBI TTCGAA 1 cut(s) 231
BstC8I GCNNGC 2 cut(s) 654, 927
BstDEI CTNAG 3 cut(s) 524, 742, 939
BstDSI CCRYGG 1 cut(s) 1123
BstF5I GGATG 4 cut(s) 327, 771, 925, 1063
BstKTI GATC 1 cut(s) 18
BstMAI GTCTC 2 cut(s) 111, 1098
BstMBI GATC 1 cut(s) 15
BstMWI GCNNNNNNNGC 2 cut(s) 272, 713
BstNI CCWGG 2 cut(s) 497, 850
BstNSI RCATGY 1 cut(s) 424
BstSCI CCNGG 2 cut(s) 495, 848
BstSFI CTRYAG 1 cut(s) 551
BstV1I GCAGC 1 cut(s) 930
BstV2I GAAGAC 1 cut(s) 993
Bsu36I CCTNAGG 1 cut(s) 524
BsuRI GGCC 1 cut(s) 323
BtgI CCRYGG 1 cut(s) 1123
BtrI CACGTC 1 cut(s) 409
BtsCI GGATG 4 cut(s) 327, 771, 925, 1063
BtsI GCAGTG 1 cut(s) 297
BtsIMutI CAGTG 3 cut(s) 297, 387, 439
Cac8I GCNNGC 2 cut(s) 654, 927
CsiI ACCWGGT 1 cut(s) 495
Csp6I GTAC 3 cut(s) 457, 486, 898
CviAII CATG 6 cut(s) 370, 421, 606, 1097, 1124, 1131
CviQI GTAC 3 cut(s) 457, 486, 898
DdeI CTNAG 3 cut(s) 524, 742, 939
DpnI GATC 1 cut(s) 17
DpnII GATC 1 cut(s) 15
DraI TTTAAA 2 cut(s) 573, 792
Eco130I CCWWGG 3 cut(s) 398, 632, 1123
Eco81I CCTNAGG 1 cut(s) 524
EcoRII CCWGG 2 cut(s) 495, 848
EcoT14I CCWWGG 3 cut(s) 398, 632, 1123
ErhI CCWWGG 3 cut(s) 398, 632, 1123
FaeI CATG 6 cut(s) 373, 424, 609, 1100, 1127, 1134
FaqI GGGAC 1 cut(s) 1116
FatI CATG 6 cut(s) 369, 420, 605, 1096, 1123, 1130
FauNDI CATATG 1 cut(s) 156
FbaI TGATCA 1 cut(s) 15
Fnu4HI GCNGC 2 cut(s) 944, 1120
FokI GGATG 4 cut(s) 314, 758, 932, 1070
Fsp4HI GCNGC 2 cut(s) 944, 1120
GluI GCNGC 2 cut(s) 944, 1120
GsuI CTGGAG 2 cut(s) 96, 780
HaeIII GGCC 1 cut(s) 323
Hin1II CATG 6 cut(s) 373, 424, 609, 1100, 1127, 1134
HinfI GANTC 4 cut(s) 151, 466, 836, 969
HphI GGTGA 1 cut(s) 574
Hpy166II GTNNAC 1 cut(s) 488
Hpy188I TCNGA 4 cut(s) 111, 776, 1006, 1045
Hpy188III TCNNGA 6 cut(s) 75, 168, 688, 700, 833, 962
Hpy8I GTNNAC 1 cut(s) 488
Hpy99I CGWCG 1 cut(s) 410
HpyAV CCTTC 3 cut(s) 334, 553, 557
HpyCH4III ACNGT 2 cut(s) 27, 823
HpyCH4IV ACGT 4 cut(s) 245, 408, 477, 1105
HpyCH4V TGCA 9 cut(s) 242, 310, 515, 553, 609, 872, 929, 935, 1130
HpyF10VI GCNNNNNNNGC 2 cut(s) 272, 713
HpyF3I CTNAG 3 cut(s) 524, 742, 939
HpySE526I ACGT 4 cut(s) 245, 408, 477, 1105
Hsp92II CATG 6 cut(s) 373, 424, 609, 1100, 1127, 1134
Ksp22I TGATCA 1 cut(s) 15
Kzo9I GATC 1 cut(s) 15
LmnI GCTCC 3 cut(s) 217, 607, 761
Lsp1109I GCAGC 1 cut(s) 930
LweI GCATC 3 cut(s) 516, 943, 944
MabI ACCWGGT 1 cut(s) 495
MaeII ACGT 4 cut(s) 245, 408, 477, 1105
MaeIII GTNAC 2 cut(s) 499, 766
MalI GATC 1 cut(s) 17
MboI GATC 1 cut(s) 15
MboII GAAGA 3 cut(s) 568, 993, 1073
MfeI CAATTG 1 cut(s) 1113
MluCI AATT 4 cut(s) 121, 672, 861, 1113
MlyI GAGTC 1 cut(s) 845
MmeI TCCRAC 2 cut(s) 418, 969
MnlI CCTC 3 cut(s) 463, 1022, 1051
MroXI GAANNNNTTC 1 cut(s) 116
MseI TTAA 5 cut(s) 474, 536, 572, 791, 915
MslI CAYNNNNRTG 1 cut(s) 332
MspA1I CMGCKG 1 cut(s) 943
MspR9I CCNGG 2 cut(s) 497, 850
MunI CAATTG 1 cut(s) 1113
Mva1269I GAATGC 1 cut(s) 709
MvaI CCWGG 2 cut(s) 497, 850
MwoI GCNNNNNNNGC 2 cut(s) 272, 713
NcoI CCATGG 1 cut(s) 1123
NdeI CATATG 1 cut(s) 156
NdeII GATC 1 cut(s) 15
NlaIII CATG 6 cut(s) 373, 424, 609, 1100, 1127, 1134
NspI RCATGY 1 cut(s) 424
NspV TTCGAA 1 cut(s) 231
PciI ACATGT 1 cut(s) 420
PctI GAATGC 1 cut(s) 709
PdmI GAANNNNTTC 1 cut(s) 116
PfeI GAWTC 3 cut(s) 151, 466, 969
Pfl23II CGTACG 1 cut(s) 456
PkrI GCNGC 2 cut(s) 945, 1121
PleI GAGTC 1 cut(s) 844
PpsI GAGTC 1 cut(s) 844
PscI ACATGT 1 cut(s) 420
Psp6I CCWGG 2 cut(s) 495, 848
PspGI CCWGG 2 cut(s) 495, 848
PspLI CGTACG 1 cut(s) 456
PstI CTGCAG 1 cut(s) 555
PvuII CAGCTG 1 cut(s) 943
RsaI GTAC 3 cut(s) 458, 487, 899
RsaNI GTAC 3 cut(s) 457, 486, 898
RseI CAYNNNNRTG 1 cut(s) 332
SaqAI TTAA 5 cut(s) 474, 536, 572, 791, 915
SatI GCNGC 2 cut(s) 944, 1120
Sau3AI GATC 1 cut(s) 15
SchI GAGTC 1 cut(s) 845
ScrFI CCNGG 2 cut(s) 497, 850
SexAI ACCWGGT 1 cut(s) 495
SfaNI GCATC 3 cut(s) 516, 943, 944
SfcI CTRYAG 1 cut(s) 551
SfuI TTCGAA 1 cut(s) 231
SmiMI CAYNNNNRTG 1 cut(s) 332
SmlI CTYRAG 1 cut(s) 644
SmoI CTYRAG 1 cut(s) 644
Sse9I AATT 4 cut(s) 121, 672, 861, 1113
StyD4I CCNGG 2 cut(s) 495, 848
StyI CCWWGG 3 cut(s) 398, 632, 1123
TaaI ACNGT 2 cut(s) 27, 823
TaiI ACGT 4 cut(s) 248, 411, 480, 1108
TaqI TCGA 2 cut(s) 231, 701
TasI AATT 4 cut(s) 121, 672, 861, 1113
TatI WGTACW 1 cut(s) 897
TfiI GAWTC 3 cut(s) 151, 466, 969
Tru1I TTAA 5 cut(s) 474, 536, 572, 791, 915
Tru9I TTAA 5 cut(s) 474, 536, 572, 791, 915
TscAI CASTG 3 cut(s) 304, 394, 439
TseI GCWGC 2 cut(s) 943, 1119
TspDTI ATGAA 7 cut(s) 143, 316, 355, 458, 1064, 1074, 1098
TspGWI ACGGA 2 cut(s) 616, 1041
TspRI CASTG 3 cut(s) 304, 394, 439
XapI RAATTY 1 cut(s) 672
XceI RCATGY 1 cut(s) 424
XmnI GAANNNNTTC 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.