MD16G1137100.v1.1

sugar phosphate phosphate translocator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0007832
Physical Location & Seq
Reverse (-)
10473129 .. 10478015
4887 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1137100.v1.1.491

Sequence Viewer

Length: 1119 bp
ATGCCCAAGATGATCAGCAAACCGCTGTTGCTGACTTATTTTTACCTATTCATCTACATTCTGCTTTCGTCCGGCGTTATATTGTACAACAAGTGGGTTCTGTCTCCAAAATACTTCAATTTTCCATTACCCATAACACTTACGATGATTCATATGGGATTTTCTGGACTAGTAGCATTTTTTCTTGTTCGTGTTTTCAAGGTTGTAGCTCCTGTCAAAATGACATTTGAAATATATGCAACTTGTGTAATTCCAATCAGTGCCTTCTTTGCGTCAAGTCTTTGGTTTGGAAACACTGCTTACTTGCATATTTCAGTGGCGTTCATCCAAATGCTCAAAGCTCTAATGCCAGTGGCTACTTTTATCATGGCTGTATTGTGTGGCACTGACAAAGCAAGGTGCGACGTGTTCACAAACATGTTGCTGGTCAGCGTTGGAGTTGTCATTTCCTCATACGGGGAGATTCATTTTAATGTAGTTGGTACAGTTTACCAGGTTACAGGCATCTTTGCAGAAGCTCTCAGGCTGGTCTTGACACAAGTCCTTCTACAGAAGAAGGGCTTGACTCTAAATCCGATCACCAGCTTGTACTATATTGCCCCATGCAGTTTTGTCTTCCTGTTTGTGCCCTGGTTGTTACTTGAGAAGTCTGCAATAGAGTATTCACAGTTTCAGTTCAACTTCTGGATCTTTTTCTCCAATGCTCTTTGTGCTTTGGCGTTGAACTTCTCCATATTCTTAGTAATTGGTAGAACTGGAGCAGTTACCATCCGGGTTGCTGGTGTTCTGAAAGACTGGATATTGATTGCCCTTTCAACTGTTATATTTCCAGAGTCTATTATAACCAGGCTGAACATAATCGGTTATGCCATAGCATTGTGTGGTGTTGTCATGTACAATTACATAAAGGTCAAGGATGTTCGTGCATCTCAGCTACCTTCAGAAAGCATTCCCGAGAGAGTATCAAAGGATTGGAAGTTGGAGAAAAAGGCCTCTGATATTTTTGTCCCTGGAGGGACTGGTTCAGCCTCCGATGGTGTTGATGAAGAAACACCCTTAACTCAATCAACAAGATTGTCTCACATTGGACGAACACAGGCTGGCAACTATGCTGCATGA

Protein Analysis

373

Amino Acids

41.38

Weight (kDa)

9.17

Isoelectric Point (pI)

33.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 14 - 300 1.4e-23 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 842
AciI CCGC 1 cut(s) 23
AclWI GGATC 1 cut(s) 695
AcuI CTGAAG 1 cut(s) 924
AfaI GTAC 4 cut(s) 86, 484, 590, 896
AfiI CCNNNNNNNGG 1 cut(s) 456
AflIII ACRYGT 2 cut(s) 405, 417
AgsI TTSAA 6 cut(s) 118, 199, 230, 679, 724, 816
AhlI ACTAGT 1 cut(s) 169
AjiI CACGTC 1 cut(s) 406
AjnI CCWGG 4 cut(s) 492, 629, 845, 1009
AluBI AGCT 5 cut(s) 209, 341, 518, 585, 934
AluI AGCT 5 cut(s) 209, 341, 518, 585, 934
Alw26I GTCTC 2 cut(s) 108, 1083
AlwI GGATC 1 cut(s) 695
Ama87I CYCGRG 1 cut(s) 953
AoxI GGCC 1 cut(s) 990
ApeKI GCWGC 1 cut(s) 1112
Asp700I GAANNNNTTC 1 cut(s) 948
AsuC2I CCSGG 1 cut(s) 773
AsuHPI GGTGA 1 cut(s) 571
AvaI CYCGRG 1 cut(s) 953
BaeGI GKGCMC 1 cut(s) 630
BbsI GAAGAC 1 cut(s) 607
BbvI GCAGC 1 cut(s) 1099
BccI CCATC 2 cut(s) 776, 1028
BciT130I CCWGG 4 cut(s) 494, 631, 847, 1011
BclI TGATCA 1 cut(s) 12
BcnI CCSGG 1 cut(s) 773
BcoDI GTCTC 2 cut(s) 108, 1083
BcuI ACTAGT 1 cut(s) 169
BfaI CTAG 1 cut(s) 170
BfmI CTRYAG 1 cut(s) 548
BisI GCNGC 1 cut(s) 1113
BlsI GCNGC 1 cut(s) 1114
Bme1390I CCNGG 5 cut(s) 494, 631, 773, 847, 1011
BmeT110I CYCGRG 1 cut(s) 953
BmgBI CACGTC 1 cut(s) 406
BmrFI CCNGG 5 cut(s) 494, 631, 773, 847, 1011
BmsI GCATC 2 cut(s) 513, 935
BoxI GACNNNNGTC 1 cut(s) 539
BpiI GAAGAC 1 cut(s) 607
BpmI CTGGAG 2 cut(s) 777, 1032
BpuEI CTTGAG 1 cut(s) 662
BpuMI CCSGG 1 cut(s) 773
BsaJI CCNNGG 2 cut(s) 629, 1009
Bsc4I CCNNNNNNNGG 1 cut(s) 456
Bse1I ACTGG 4 cut(s) 350, 760, 800, 1024
BseBI CCWGG 4 cut(s) 494, 631, 847, 1011
BseDI CCNNGG 2 cut(s) 629, 1009
BseGI GGATG 3 cut(s) 324, 768, 922
BseLI CCNNNNNNNGG 1 cut(s) 456
BseMII CTCAG 2 cut(s) 535, 944
BseNI ACTGG 4 cut(s) 350, 760, 800, 1024
BseSI GKGCMC 1 cut(s) 630
BseXI GCAGC 1 cut(s) 1099
BshFI GGCC 1 cut(s) 992
BsiHKCI CYCGRG 1 cut(s) 953
BsiSI CCGG 2 cut(s) 72, 772
BslFI GGGAC 2 cut(s) 992, 1030
BslI CCNNNNNNNGG 1 cut(s) 456
BsmAI GTCTC 2 cut(s) 108, 1083
BsmFI GGGAC 2 cut(s) 992, 1030
BsmI GAATGC 1 cut(s) 948
BsnI GGCC 1 cut(s) 992
BsoBI CYCGRG 1 cut(s) 953
Bsp1286I GDGCHC 1 cut(s) 630
Bsp1407I TGTACA 2 cut(s) 84, 894
Bsp143I GATC 3 cut(s) 12, 576, 687
BspACI CCGC 1 cut(s) 23
BspANI GGCC 1 cut(s) 992
BspCNI CTCAG 2 cut(s) 534, 943
BspPI GGATC 1 cut(s) 695
BsrGI TGTACA 2 cut(s) 84, 894
BsrI ACTGG 4 cut(s) 350, 760, 800, 1024
BssECI CCNNGG 2 cut(s) 629, 1009
BssMI GATC 3 cut(s) 12, 576, 687
Bst2UI CCWGG 4 cut(s) 494, 631, 847, 1011
Bst4CI ACNGT 3 cut(s) 487, 669, 820
BstAUI TGTACA 2 cut(s) 84, 894
BstC8I GCNNGC 1 cut(s) 1102
BstDEI CTNAG 3 cut(s) 521, 739, 930
BstF5I GGATG 3 cut(s) 324, 768, 922
BstKTI GATC 3 cut(s) 15, 579, 690
BstMAI GTCTC 2 cut(s) 108, 1083
BstMBI GATC 3 cut(s) 12, 576, 687
BstMWI GCNNNNNNNGC 2 cut(s) 269, 710
BstNI CCWGG 4 cut(s) 494, 631, 847, 1011
BstNSI RCATGY 1 cut(s) 421
BstPAI GACNNNNGTC 1 cut(s) 539
BstSCI CCNGG 5 cut(s) 492, 629, 771, 845, 1009
BstSFI CTRYAG 1 cut(s) 548
BstSLI GKGCMC 1 cut(s) 630
BstV1I GCAGC 1 cut(s) 1099
BstV2I GAAGAC 1 cut(s) 607
BstX2I RGATCY 1 cut(s) 687
BstYI RGATCY 1 cut(s) 687
BsuRI GGCC 1 cut(s) 992
BtrI CACGTC 1 cut(s) 406
BtsCI GGATG 3 cut(s) 324, 768, 922
BtsI GCAGTG 1 cut(s) 294
BtsIMutI CAGTG 5 cut(s) 265, 294, 321, 357, 384
Cac8I GCNNGC 1 cut(s) 1102
CseI GACGC 1 cut(s) 261
CsiI ACCWGGT 1 cut(s) 492
Csp6I GTAC 4 cut(s) 85, 483, 589, 895
CviAII CATG 5 cut(s) 367, 418, 603, 892, 1116
CviQI GTAC 4 cut(s) 85, 483, 589, 895
DdeI CTNAG 3 cut(s) 521, 739, 930
DpnI GATC 3 cut(s) 14, 578, 689
DpnII GATC 3 cut(s) 12, 576, 687
Eco147I AGGCCT 1 cut(s) 992
Eco57I CTGAAG 1 cut(s) 924
Eco88I CYCGRG 1 cut(s) 953
EcoRII CCWGG 4 cut(s) 492, 629, 845, 1009
FaeI CATG 5 cut(s) 370, 421, 606, 895, 1119
FalI AAGNNNNNCTT 2 cut(s) 545, 577
FaqI GGGAC 2 cut(s) 992, 1030
FatI CATG 5 cut(s) 366, 417, 602, 891, 1115
FauNDI CATATG 1 cut(s) 153
FbaI TGATCA 1 cut(s) 12
Fnu4HI GCNGC 1 cut(s) 1113
FokI GGATG 3 cut(s) 311, 755, 929
Fsp4HI GCNGC 1 cut(s) 1113
FspBI CTAG 1 cut(s) 170
GluI GCNGC 1 cut(s) 1113
GsuI CTGGAG 2 cut(s) 777, 1032
HaeIII GGCC 1 cut(s) 992
HapII CCGG 2 cut(s) 72, 772
HgaI GACGC 1 cut(s) 261
Hin1II CATG 5 cut(s) 370, 421, 606, 895, 1119
HinfI GANTC 4 cut(s) 148, 463, 565, 833
HpaII CCGG 2 cut(s) 72, 772
HphI GGTGA 1 cut(s) 571
Hpy166II GTNNAC 2 cut(s) 411, 490
Hpy188I TCNGA 5 cut(s) 576, 789, 943, 997, 1033
Hpy188III TCNNGA 5 cut(s) 165, 532, 685, 830, 953
Hpy8I GTNNAC 2 cut(s) 411, 490
Hpy99I CGWCG 1 cut(s) 407
HpyAV CCTTC 4 cut(s) 274, 550, 554, 948
HpyCH4III ACNGT 3 cut(s) 487, 669, 820
HpyCH4IV ACGT 1 cut(s) 405
HpyCH4V TGCA 7 cut(s) 239, 307, 512, 606, 653, 926, 1115
HpyF10VI GCNNNNNNNGC 2 cut(s) 269, 710
HpyF3I CTNAG 3 cut(s) 521, 739, 930
HpySE526I ACGT 1 cut(s) 405
Hsp92II CATG 5 cut(s) 370, 421, 606, 895, 1119
Ksp22I TGATCA 1 cut(s) 12
Kzo9I GATC 3 cut(s) 12, 576, 687
LmnI GCTCC 2 cut(s) 214, 758
Lsp1109I GCAGC 1 cut(s) 1099
LweI GCATC 2 cut(s) 513, 935
MabI ACCWGGT 1 cut(s) 492
MaeI CTAG 1 cut(s) 170
MaeII ACGT 1 cut(s) 405
MaeIII GTNAC 3 cut(s) 496, 636, 763
MalI GATC 3 cut(s) 14, 578, 689
MboI GATC 3 cut(s) 12, 576, 687
MboII GAAGA 3 cut(s) 565, 607, 1058
MflI RGATCY 1 cut(s) 687
MhlI GDGCHC 1 cut(s) 630
MluCI AATT 4 cut(s) 118, 249, 744, 898
MlyI GAGTC 2 cut(s) 559, 842
MmeI TCCRAC 2 cut(s) 415, 960
MnlI CCTC 4 cut(s) 460, 1003, 1007, 1039
MroXI GAANNNNTTC 1 cut(s) 948
MseI TTAA 2 cut(s) 471, 1058
MslI CAYNNNNRTG 3 cut(s) 329, 416, 471
MspA1I CMGCKG 1 cut(s) 25
MspI CCGG 2 cut(s) 72, 772
MspR9I CCNGG 5 cut(s) 494, 631, 773, 847, 1011
Mva1269I GAATGC 1 cut(s) 948
MvaI CCWGG 4 cut(s) 494, 631, 847, 1011
MwoI GCNNNNNNNGC 2 cut(s) 269, 710
NciI CCSGG 1 cut(s) 773
NdeI CATATG 1 cut(s) 153
NdeII GATC 3 cut(s) 12, 576, 687
NlaIII CATG 5 cut(s) 370, 421, 606, 895, 1119
NspI RCATGY 1 cut(s) 421
PceI AGGCCT 1 cut(s) 992
PciI ACATGT 1 cut(s) 417
PctI GAATGC 1 cut(s) 948
PdmI GAANNNNTTC 1 cut(s) 948
PfeI GAWTC 2 cut(s) 148, 463
PkrI GCNGC 1 cut(s) 1114
PleI GAGTC 2 cut(s) 559, 841
PpsI GAGTC 2 cut(s) 559, 841
PscI ACATGT 1 cut(s) 417
PshAI GACNNNNGTC 1 cut(s) 539
PsiI TTATAA 1 cut(s) 842
Psp6I CCWGG 4 cut(s) 492, 629, 845, 1009
PspGI CCWGG 4 cut(s) 492, 629, 845, 1009
PsuI RGATCY 1 cut(s) 687
RsaI GTAC 4 cut(s) 86, 484, 590, 896
RsaNI GTAC 4 cut(s) 85, 483, 589, 895
RseI CAYNNNNRTG 3 cut(s) 329, 416, 471
SaqAI TTAA 2 cut(s) 471, 1058
SatI GCNGC 1 cut(s) 1113
Sau3AI GATC 3 cut(s) 12, 576, 687
SchI GAGTC 2 cut(s) 559, 842
ScrFI CCNGG 5 cut(s) 494, 631, 773, 847, 1011
SduI GDGCHC 1 cut(s) 630
SexAI ACCWGGT 1 cut(s) 492
SfaNI GCATC 2 cut(s) 513, 935
SfcI CTRYAG 1 cut(s) 548
SmiMI CAYNNNNRTG 3 cut(s) 329, 416, 471
SmlI CTYRAG 1 cut(s) 641
SmoI CTYRAG 1 cut(s) 641
SpeI ACTAGT 1 cut(s) 169
Sse9I AATT 4 cut(s) 118, 249, 744, 898
SseBI AGGCCT 1 cut(s) 992
SsiI CCGC 1 cut(s) 23
SspMI CTAG 1 cut(s) 170
StuI AGGCCT 1 cut(s) 992
StyD4I CCNGG 5 cut(s) 492, 629, 771, 845, 1009
TaaI ACNGT 3 cut(s) 487, 669, 820
TaiI ACGT 1 cut(s) 408
TasI AATT 4 cut(s) 118, 249, 744, 898
TatI WGTACW 3 cut(s) 84, 588, 894
TfiI GAWTC 2 cut(s) 148, 463
Tru1I TTAA 2 cut(s) 471, 1058
Tru9I TTAA 2 cut(s) 471, 1058
TscAI CASTG 5 cut(s) 265, 301, 321, 357, 391
TseI GCWGC 1 cut(s) 1112
TspDTI ATGAA 5 cut(s) 40, 140, 313, 455, 1059
TspRI CASTG 5 cut(s) 265, 301, 321, 357, 391
XceI RCATGY 1 cut(s) 421
XmnI GAANNNNTTC 1 cut(s) 948
XspI CTAG 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.