Rw4G023740

sugar phosphate phosphate translocator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0007832
Physical Location & Seq
Forward (+)
49495189 .. 49500413
5225 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G023740.1

Sequence Viewer

Length: 1134 bp
ATGTCAGGCAAGATGATCAACAGACCGTTGCTACTGACTTATTTTTACCTACTGATCTATGTTCTGCTTTCATCTGGAGTTATATTGTACAACAAGTGGGTTCTGTCTCCGAAATACTTCAATTTTCCATTGCCCATAACACTTACGATGATTCATATGGGGTTTTCTGGATTGGTAGCATTTTTTCTCGTTCGTGTTTTCAAGGTTGTAGCTCCTGTCAAAATGACATTCGAAATATATGCAACATGTGTAATACCAATAAGTGCCTTCTTTGCTTCAAGTCTTTGGTTTGGAAACACAGCTTACTTGCATATTTCTGTGGCTTTCATCCAAATGCTCAAAGCTCTAATGCCGGTGGCTACTTTTATCATGGCTGTTTTATGTGGCACTGATAAACCAAGGTGCGACGTGTTCTCAAACATGTTGCTGGTCAGTGTTGGAGTTGTCGTTTCCTCGTACGGGGAGATTCATTTTAATGTAGTTGGTACACTTTACCAGGTTACGGGCATCTTTGCAGAAGCCCTTAGGCTGGTCTTAACACAAGTCCTTTTGCAGAAGAAGGGTTTGACTTTAAATCCAATCACCAGCTTATACTATATAGCTCCATGCAGTTTTGTATTCCTGTCTGTGCCTTGGTTATTACTTGAGAAGCCTGCAATGGAAGTGTCACAAATTCAGTTCAACTTCTGGATCTTTTTCTCCAATGCTCTATGTGCTTTGGCTTTGAACTTCTCCATATTCTTAGTAATTGGTAGAACTGGAGCAGTTACTATTCGAGTTGCTGGTGTTTTAAAAGACTGGATTTTGATTGCCCTTTCAACTGTTATATTTCCAGAGTCTATCATAACCAGGCTGAACATAATTGGTTATGCAATAGCATTGTGTGGTGTCGTCATGTACAACTACATAAAGGTTAAGGATGTGCGTGCATCTGCATCTCAGCTGCCTATTGACACTATTCCGGACAGAATCTCGAAGGATTGGAAGTTGGAGAAAAAGTCTTCTGATATCTTTGTGCCTAATAATGGAGGGGGTTTATCCTCTGATATGAATGTGGACGAAGAAACACCCCTAACTCAATCATCAAGGTTGTCTCACGTGGGACGCTCGTCGAGTGGCAACCATGGTGCATGA

Protein Analysis

377

Amino Acids

41.77

Weight (kDa)

9.21

Isoelectric Point (pI)

31.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 15 - 301 1.5e-23 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 961
AclWI GGATC 1 cut(s) 698
AcsI RAATTY 1 cut(s) 672
AcvI CACGTG 1 cut(s) 1099
AfaI GTAC 4 cut(s) 89, 458, 487, 899
AfiI CCNNNNNNNGG 4 cut(s) 459, 502, 529, 1025
AflIII ACRYGT 3 cut(s) 245, 408, 420
AgsI TTSAA 6 cut(s) 121, 202, 279, 682, 727, 819
AjiI CACGTC 1 cut(s) 409
AjnI CCWGG 2 cut(s) 495, 848
AluBI AGCT 6 cut(s) 212, 302, 344, 588, 602, 943
AluI AGCT 6 cut(s) 212, 302, 344, 588, 602, 943
Alw26I GTCTC 2 cut(s) 111, 1098
AlwI GGATC 1 cut(s) 698
Aor13HI TCCGGA 1 cut(s) 961
ApeKI GCWGC 1 cut(s) 943
ApoI RAATTY 1 cut(s) 672
Asp700I GAANNNNTTC 1 cut(s) 116
AsuHPI GGTGA 1 cut(s) 574
AsuII TTCGAA 1 cut(s) 231
AxyI CCTNAGG 1 cut(s) 524
BbrPI CACGTG 1 cut(s) 1099
BbsI GAAGAC 1 cut(s) 993
BbvI GCAGC 1 cut(s) 930
BcgI CGANNNNNNTGC 2 cut(s) 221, 255
BciT130I CCWGG 2 cut(s) 497, 850
BclI TGATCA 1 cut(s) 15
BcoDI GTCTC 2 cut(s) 111, 1098
BisI GCNGC 1 cut(s) 944
BlsI GCNGC 1 cut(s) 945
Bme1390I CCNGG 2 cut(s) 497, 850
BmgBI CACGTC 1 cut(s) 409
BmrFI CCNGG 2 cut(s) 497, 850
BmsI GCATC 3 cut(s) 516, 938, 944
BoxI GACNNNNGTC 1 cut(s) 1108
BpiI GAAGAC 1 cut(s) 993
BpmI CTGGAG 2 cut(s) 96, 780
Bpu14I TTCGAA 1 cut(s) 231
BpuEI CTTGAG 1 cut(s) 665
BsaAI YACGTR 1 cut(s) 1099
BsaJI CCNNGG 3 cut(s) 398, 632, 1123
BsaWI WCCGGW 1 cut(s) 961
BsaXI ACNNNNNCTCC 4 cut(s) 432, 462, 983, 1013
Bsc4I CCNNNNNNNGG 4 cut(s) 459, 502, 529, 1025
Bse118I RCCGGY 1 cut(s) 352
Bse1I ACTGG 2 cut(s) 763, 803
Bse21I CCTNAGG 1 cut(s) 524
Bse3DI GCAATG 2 cut(s) 128, 663
BseAI TCCGGA 1 cut(s) 961
BseBI CCWGG 2 cut(s) 497, 850
BseDI CCNNGG 3 cut(s) 398, 632, 1123
BseGI GGATG 2 cut(s) 327, 925
BseLI CCNNNNNNNGG 4 cut(s) 459, 502, 529, 1025
BseMI GCAATG 2 cut(s) 128, 663
BseMII CTCAG 1 cut(s) 953
BseNI ACTGG 2 cut(s) 763, 803
BseXI GCAGC 1 cut(s) 930
BsiSI CCGG 2 cut(s) 353, 962
BsiWI CGTACG 1 cut(s) 456
BslFI GGGAC 1 cut(s) 1116
BslI CCNNNNNNNGG 4 cut(s) 459, 502, 529, 1025
BsmAI GTCTC 2 cut(s) 111, 1098
BsmFI GGGAC 1 cut(s) 1116
Bsp119I TTCGAA 1 cut(s) 231
Bsp13I TCCGGA 1 cut(s) 961
Bsp1407I TGTACA 2 cut(s) 87, 897
Bsp143I GATC 3 cut(s) 15, 54, 690
Bsp19I CCATGG 1 cut(s) 1123
BspCNI CTCAG 1 cut(s) 952
BspEI TCCGGA 1 cut(s) 961
BspPI GGATC 1 cut(s) 698
BspT104I TTCGAA 1 cut(s) 231
BsrDI GCAATG 2 cut(s) 128, 663
BsrFI RCCGGY 1 cut(s) 352
BsrGI TGTACA 2 cut(s) 87, 897
BsrI ACTGG 2 cut(s) 763, 803
BssAI RCCGGY 1 cut(s) 352
BssECI CCNNGG 3 cut(s) 398, 632, 1123
BssMI GATC 3 cut(s) 15, 54, 690
BssT1I CCWWGG 3 cut(s) 398, 632, 1123
Bst2UI CCWGG 2 cut(s) 497, 850
Bst4CI ACNGT 2 cut(s) 27, 823
BstAUI TGTACA 2 cut(s) 87, 897
BstBAI YACGTR 1 cut(s) 1099
BstBI TTCGAA 1 cut(s) 231
BstC8I GCNNGC 2 cut(s) 654, 927
BstDEI CTNAG 3 cut(s) 524, 742, 939
BstDSI CCRYGG 1 cut(s) 1123
BstF5I GGATG 2 cut(s) 327, 925
BstKTI GATC 3 cut(s) 18, 57, 693
BstMAI GTCTC 2 cut(s) 111, 1098
BstMBI GATC 3 cut(s) 15, 54, 690
BstMWI GCNNNNNNNGC 2 cut(s) 272, 713
BstNI CCWGG 2 cut(s) 497, 850
BstNSI RCATGY 2 cut(s) 249, 424
BstPAI GACNNNNGTC 1 cut(s) 1108
BstSCI CCNGG 2 cut(s) 495, 848
BstV1I GCAGC 1 cut(s) 930
BstV2I GAAGAC 1 cut(s) 993
BstX2I RGATCY 1 cut(s) 690
BstYI RGATCY 1 cut(s) 690
Bsu36I CCTNAGG 1 cut(s) 524
BtgI CCRYGG 1 cut(s) 1123
BtrI CACGTC 1 cut(s) 409
BtsCI GGATG 2 cut(s) 327, 925
BtsIMutI CAGTG 2 cut(s) 387, 439
Cac8I GCNNGC 2 cut(s) 654, 927
Cfr10I RCCGGY 1 cut(s) 352
CseI GACGC 1 cut(s) 1113
CsiI ACCWGGT 1 cut(s) 495
Csp6I GTAC 4 cut(s) 88, 457, 486, 898
CviAII CATG 7 cut(s) 246, 370, 421, 606, 895, 1124, 1131
CviQI GTAC 4 cut(s) 88, 457, 486, 898
DdeI CTNAG 3 cut(s) 524, 742, 939
DpnI GATC 3 cut(s) 17, 56, 692
DpnII GATC 3 cut(s) 15, 54, 690
DraI TTTAAA 2 cut(s) 573, 792
Eco130I CCWWGG 3 cut(s) 398, 632, 1123
Eco32I GATATC 1 cut(s) 1009
Eco72I CACGTG 1 cut(s) 1099
Eco81I CCTNAGG 1 cut(s) 524
EcoRII CCWGG 2 cut(s) 495, 848
EcoRV GATATC 1 cut(s) 1009
EcoT14I CCWWGG 3 cut(s) 398, 632, 1123
ErhI CCWWGG 3 cut(s) 398, 632, 1123
FaeI CATG 7 cut(s) 249, 373, 424, 609, 898, 1127, 1134
FaqI GGGAC 1 cut(s) 1116
FatI CATG 7 cut(s) 245, 369, 420, 605, 894, 1123, 1130
FauNDI CATATG 1 cut(s) 156
FbaI TGATCA 1 cut(s) 15
Fnu4HI GCNGC 1 cut(s) 944
FokI GGATG 2 cut(s) 314, 932
Fsp4HI GCNGC 1 cut(s) 944
GluI GCNGC 1 cut(s) 944
GsuI CTGGAG 2 cut(s) 96, 780
HapII CCGG 2 cut(s) 353, 962
HgaI GACGC 1 cut(s) 1113
Hin1II CATG 7 cut(s) 249, 373, 424, 609, 898, 1127, 1134
HinfI GANTC 4 cut(s) 151, 466, 836, 969
HpaII CCGG 2 cut(s) 353, 962
HphI GGTGA 1 cut(s) 574
Hpy166II GTNNAC 2 cut(s) 488, 1057
Hpy188I TCNGA 3 cut(s) 111, 1006, 1045
Hpy188III TCNNGA 6 cut(s) 75, 168, 688, 833, 962, 973
Hpy8I GTNNAC 2 cut(s) 488, 1057
Hpy99I CGWCG 2 cut(s) 410, 1114
HpyAV CCTTC 3 cut(s) 277, 553, 970
HpyCH4III ACNGT 2 cut(s) 27, 823
HpyCH4IV ACGT 2 cut(s) 408, 1098
HpyF10VI GCNNNNNNNGC 2 cut(s) 272, 713
HpyF3I CTNAG 3 cut(s) 524, 742, 939
HpySE526I ACGT 2 cut(s) 408, 1098
Hsp92II CATG 7 cut(s) 249, 373, 424, 609, 898, 1127, 1134
Kpn2I TCCGGA 1 cut(s) 961
Ksp22I TGATCA 1 cut(s) 15
Kzo9I GATC 3 cut(s) 15, 54, 690
LmnI GCTCC 3 cut(s) 217, 607, 761
Lsp1109I GCAGC 1 cut(s) 930
LweI GCATC 3 cut(s) 516, 938, 944
MabI ACCWGGT 1 cut(s) 495
MaeII ACGT 2 cut(s) 408, 1098
MaeIII GTNAC 3 cut(s) 499, 666, 766
MalI GATC 3 cut(s) 17, 56, 692
MboI GATC 3 cut(s) 15, 54, 690
MboII GAAGA 3 cut(s) 568, 993, 1073
MflI RGATCY 1 cut(s) 690
MluCI AATT 4 cut(s) 121, 672, 747, 861
MlyI GAGTC 1 cut(s) 845
MmeI TCCRAC 2 cut(s) 418, 969
MnlI CCTC 3 cut(s) 463, 1022, 1051
MroI TCCGGA 1 cut(s) 961
MroXI GAANNNNTTC 1 cut(s) 116
MseI TTAA 5 cut(s) 474, 536, 572, 791, 915
MslI CAYNNNNRTG 2 cut(s) 332, 474
MspA1I CMGCKG 1 cut(s) 943
MspI CCGG 2 cut(s) 353, 962
MspR9I CCNGG 2 cut(s) 497, 850
MvaI CCWGG 2 cut(s) 497, 850
MwoI GCNNNNNNNGC 2 cut(s) 272, 713
NcoI CCATGG 1 cut(s) 1123
NdeI CATATG 1 cut(s) 156
NdeII GATC 3 cut(s) 15, 54, 690
NlaIII CATG 7 cut(s) 249, 373, 424, 609, 898, 1127, 1134
NmuCI GTSAC 1 cut(s) 666
NspI RCATGY 2 cut(s) 249, 424
NspV TTCGAA 1 cut(s) 231
PciI ACATGT 2 cut(s) 245, 420
PdmI GAANNNNTTC 1 cut(s) 116
PfeI GAWTC 3 cut(s) 151, 466, 969
Pfl23II CGTACG 1 cut(s) 456
PkrI GCNGC 1 cut(s) 945
PleI GAGTC 1 cut(s) 844
PmaCI CACGTG 1 cut(s) 1099
PmlI CACGTG 1 cut(s) 1099
PpsI GAGTC 1 cut(s) 844
Ppu21I YACGTR 1 cut(s) 1099
PscI ACATGT 2 cut(s) 245, 420
PshAI GACNNNNGTC 1 cut(s) 1108
Psp6I CCWGG 2 cut(s) 495, 848
PspCI CACGTG 1 cut(s) 1099
PspGI CCWGG 2 cut(s) 495, 848
PspLI CGTACG 1 cut(s) 456
PsuI RGATCY 1 cut(s) 690
PvuII CAGCTG 1 cut(s) 943
RsaI GTAC 4 cut(s) 89, 458, 487, 899
RsaNI GTAC 4 cut(s) 88, 457, 486, 898
RseI CAYNNNNRTG 2 cut(s) 332, 474
SaqAI TTAA 5 cut(s) 474, 536, 572, 791, 915
SatI GCNGC 1 cut(s) 944
Sau3AI GATC 3 cut(s) 15, 54, 690
SchI GAGTC 1 cut(s) 845
ScrFI CCNGG 2 cut(s) 497, 850
SexAI ACCWGGT 1 cut(s) 495
SfaNI GCATC 3 cut(s) 516, 938, 944
SfuI TTCGAA 1 cut(s) 231
SmiMI CAYNNNNRTG 2 cut(s) 332, 474
SmlI CTYRAG 1 cut(s) 644
SmoI CTYRAG 1 cut(s) 644
Sse9I AATT 4 cut(s) 121, 672, 747, 861
StyD4I CCNGG 2 cut(s) 495, 848
StyI CCWWGG 3 cut(s) 398, 632, 1123
TaaI ACNGT 2 cut(s) 27, 823
TaiI ACGT 2 cut(s) 411, 1101
TaqI TCGA 4 cut(s) 231, 775, 974, 1112
TasI AATT 4 cut(s) 121, 672, 747, 861
TatI WGTACW 2 cut(s) 87, 897
TfiI GAWTC 3 cut(s) 151, 466, 969
Tru1I TTAA 5 cut(s) 474, 536, 572, 791, 915
Tru9I TTAA 5 cut(s) 474, 536, 572, 791, 915
TscAI CASTG 2 cut(s) 394, 439
TseFI GTSAC 1 cut(s) 666
TseI GCWGC 1 cut(s) 943
Tsp45I GTSAC 1 cut(s) 666
TspDTI ATGAA 5 cut(s) 60, 143, 316, 458, 1064
TspRI CASTG 2 cut(s) 394, 439
XapI RAATTY 1 cut(s) 672
XceI RCATGY 2 cut(s) 249, 424
XmnI GAANNNNTTC 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.