Rh4DG276800

sugar phosphate phosphate translocator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0007832
Physical Location & Seq
Forward (+)
49740428 .. 49745971
5544 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG276800.1

Sequence Viewer

Length: 912 bp
ATGACATTCGAAATATATGCAACATGTGTAATACCAATAAGTGCCTTCTTTGCTTCAAGTCTTTGGTTTGGAAACACAGCTTACTTGCATATTTCTGTGGCTTTCATCCAAATGCTCAAAGCTCTAATGCCGGTGGCTACTTTTATCATGGCTGTTTTATGTGGCACTGATAAACCAAGGTGCGACGTGTTCTCAAACATGTTGCTGGTCAGTGTTGGAGTTGTCGTTTCCTCGTACGGGGAGATTCATTTTAATGTAGTTGGTACACTTTACCAGGTTACGGGCATCTTTGCAGAAGCCCTTAGGCTGGTCTTAACACAAGTCCTTTTGCAGAAGAAGGGTTTGACTTTAAATCCAATCACCAGCTTATACTATATAGCTCCATGCAGTTTTGTATTCCTGTCTGTGCCTTGGTTATTACTTGAGAAGCCTGCAATGGAAGTGTCACAAATTCAGTTCAACTTCTGGATCTTTTTCTCCAATGCTCTATGTGCTTTGGCTTTGAACTTCTCCATATTCTTAGTAATTGGTAGAACTGGAGCAGTTACTATTCGAGTTGCTGGTGTTTTAAAAGACTGGATTTTGATTGCCCTTTCAACTGTTATATTTCCAGAGTCTATCATAACCAGGCTGAACATAATTGGTTATGCAATAGCATTGTGTGGTGTCGTCATGTACAACTACATAAAGGTTAAGGATGTGCGTGCATCTGCATCTCAGCTGCCTATTGACACTATTCCGGACAGAATCTCGAAGGATTGGAAGTTGGAGAAAAAGTCTTCTGATATCTTTGTGCCTAATAATGGAGGGGGTTTATCCTCTGATATGAATGTGGACGAAGAAACACCCCTAACTCAATCATCAAGGTTGTCTCACGTGGGACGCTCGTCGAGTGGCAACCATGGTGCATGA

Protein Analysis

303

Amino Acids

33.26

Weight (kDa)

8.17

Isoelectric Point (pI)

27.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 9 - 227 4.5e-20 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 739
AclWI GGATC 1 cut(s) 476
AcsI RAATTY 1 cut(s) 450
AcvI CACGTG 1 cut(s) 877
AfaI GTAC 3 cut(s) 236, 265, 677
AfiI CCNNNNNNNGG 4 cut(s) 237, 280, 307, 803
AflIII ACRYGT 3 cut(s) 23, 186, 198
AgsI TTSAA 4 cut(s) 57, 460, 505, 597
AjiI CACGTC 1 cut(s) 187
AjnI CCWGG 2 cut(s) 273, 626
AluBI AGCT 5 cut(s) 80, 122, 366, 380, 721
AluI AGCT 5 cut(s) 80, 122, 366, 380, 721
Alw26I GTCTC 1 cut(s) 876
AlwI GGATC 1 cut(s) 476
Aor13HI TCCGGA 1 cut(s) 739
ApeKI GCWGC 1 cut(s) 721
ApoI RAATTY 1 cut(s) 450
AsuHPI GGTGA 1 cut(s) 352
AsuII TTCGAA 1 cut(s) 9
AxyI CCTNAGG 1 cut(s) 302
BbrPI CACGTG 1 cut(s) 877
BbsI GAAGAC 1 cut(s) 771
BbvI GCAGC 1 cut(s) 708
BcgI CGANNNNNNTGC 1 cut(s) 33
BciT130I CCWGG 2 cut(s) 275, 628
BcoDI GTCTC 1 cut(s) 876
BisI GCNGC 1 cut(s) 722
BlsI GCNGC 1 cut(s) 723
Bme1390I CCNGG 2 cut(s) 275, 628
BmgBI CACGTC 1 cut(s) 187
BmrFI CCNGG 2 cut(s) 275, 628
BmsI GCATC 3 cut(s) 294, 716, 722
BoxI GACNNNNGTC 1 cut(s) 886
BpiI GAAGAC 1 cut(s) 771
BpmI CTGGAG 1 cut(s) 558
Bpu14I TTCGAA 1 cut(s) 9
BpuEI CTTGAG 1 cut(s) 443
BsaAI YACGTR 1 cut(s) 877
BsaJI CCNNGG 3 cut(s) 176, 410, 901
BsaWI WCCGGW 1 cut(s) 739
BsaXI ACNNNNNCTCC 4 cut(s) 210, 240, 761, 791
Bsc4I CCNNNNNNNGG 4 cut(s) 237, 280, 307, 803
Bse118I RCCGGY 1 cut(s) 130
Bse1I ACTGG 2 cut(s) 541, 581
Bse21I CCTNAGG 1 cut(s) 302
Bse3DI GCAATG 1 cut(s) 441
BseAI TCCGGA 1 cut(s) 739
BseBI CCWGG 2 cut(s) 275, 628
BseDI CCNNGG 3 cut(s) 176, 410, 901
BseGI GGATG 2 cut(s) 105, 703
BseLI CCNNNNNNNGG 4 cut(s) 237, 280, 307, 803
BseMI GCAATG 1 cut(s) 441
BseMII CTCAG 1 cut(s) 731
BseNI ACTGG 2 cut(s) 541, 581
BseXI GCAGC 1 cut(s) 708
BsiSI CCGG 2 cut(s) 131, 740
BsiWI CGTACG 1 cut(s) 234
BslFI GGGAC 1 cut(s) 894
BslI CCNNNNNNNGG 4 cut(s) 237, 280, 307, 803
BsmAI GTCTC 1 cut(s) 876
BsmFI GGGAC 1 cut(s) 894
Bsp119I TTCGAA 1 cut(s) 9
Bsp13I TCCGGA 1 cut(s) 739
Bsp1407I TGTACA 1 cut(s) 675
Bsp143I GATC 1 cut(s) 468
Bsp19I CCATGG 1 cut(s) 901
BspCNI CTCAG 1 cut(s) 730
BspEI TCCGGA 1 cut(s) 739
BspPI GGATC 1 cut(s) 476
BspT104I TTCGAA 1 cut(s) 9
BsrDI GCAATG 1 cut(s) 441
BsrFI RCCGGY 1 cut(s) 130
BsrGI TGTACA 1 cut(s) 675
BsrI ACTGG 2 cut(s) 541, 581
BssAI RCCGGY 1 cut(s) 130
BssECI CCNNGG 3 cut(s) 176, 410, 901
BssMI GATC 1 cut(s) 468
BssT1I CCWWGG 3 cut(s) 176, 410, 901
Bst2UI CCWGG 2 cut(s) 275, 628
Bst4CI ACNGT 1 cut(s) 601
BstAUI TGTACA 1 cut(s) 675
BstBAI YACGTR 1 cut(s) 877
BstBI TTCGAA 1 cut(s) 9
BstC8I GCNNGC 2 cut(s) 432, 705
BstDEI CTNAG 3 cut(s) 302, 520, 717
BstDSI CCRYGG 1 cut(s) 901
BstF5I GGATG 2 cut(s) 105, 703
BstKTI GATC 1 cut(s) 471
BstMAI GTCTC 1 cut(s) 876
BstMBI GATC 1 cut(s) 468
BstMWI GCNNNNNNNGC 2 cut(s) 50, 491
BstNI CCWGG 2 cut(s) 275, 628
BstNSI RCATGY 2 cut(s) 27, 202
BstPAI GACNNNNGTC 1 cut(s) 886
BstSCI CCNGG 2 cut(s) 273, 626
BstV1I GCAGC 1 cut(s) 708
BstV2I GAAGAC 1 cut(s) 771
BstX2I RGATCY 1 cut(s) 468
BstYI RGATCY 1 cut(s) 468
Bsu36I CCTNAGG 1 cut(s) 302
BtgI CCRYGG 1 cut(s) 901
BtrI CACGTC 1 cut(s) 187
BtsCI GGATG 2 cut(s) 105, 703
BtsIMutI CAGTG 2 cut(s) 165, 217
Cac8I GCNNGC 2 cut(s) 432, 705
Cfr10I RCCGGY 1 cut(s) 130
CseI GACGC 1 cut(s) 891
CsiI ACCWGGT 1 cut(s) 273
Csp6I GTAC 3 cut(s) 235, 264, 676
CviAII CATG 7 cut(s) 24, 148, 199, 384, 673, 902, 909
CviQI GTAC 3 cut(s) 235, 264, 676
DdeI CTNAG 3 cut(s) 302, 520, 717
DpnI GATC 1 cut(s) 470
DpnII GATC 1 cut(s) 468
DraI TTTAAA 2 cut(s) 351, 570
Eco130I CCWWGG 3 cut(s) 176, 410, 901
Eco32I GATATC 1 cut(s) 787
Eco72I CACGTG 1 cut(s) 877
Eco81I CCTNAGG 1 cut(s) 302
EcoRII CCWGG 2 cut(s) 273, 626
EcoRV GATATC 1 cut(s) 787
EcoT14I CCWWGG 3 cut(s) 176, 410, 901
ErhI CCWWGG 3 cut(s) 176, 410, 901
FaeI CATG 7 cut(s) 27, 151, 202, 387, 676, 905, 912
FaqI GGGAC 1 cut(s) 894
FatI CATG 7 cut(s) 23, 147, 198, 383, 672, 901, 908
Fnu4HI GCNGC 1 cut(s) 722
FokI GGATG 2 cut(s) 92, 710
Fsp4HI GCNGC 1 cut(s) 722
GluI GCNGC 1 cut(s) 722
GsuI CTGGAG 1 cut(s) 558
HapII CCGG 2 cut(s) 131, 740
HgaI GACGC 1 cut(s) 891
Hin1II CATG 7 cut(s) 27, 151, 202, 387, 676, 905, 912
HinfI GANTC 3 cut(s) 244, 614, 747
HpaII CCGG 2 cut(s) 131, 740
HphI GGTGA 1 cut(s) 352
Hpy166II GTNNAC 2 cut(s) 266, 835
Hpy188I TCNGA 2 cut(s) 784, 823
Hpy188III TCNNGA 4 cut(s) 466, 611, 740, 751
Hpy8I GTNNAC 2 cut(s) 266, 835
Hpy99I CGWCG 2 cut(s) 188, 892
HpyAV CCTTC 3 cut(s) 55, 331, 748
HpyCH4III ACNGT 1 cut(s) 601
HpyCH4IV ACGT 2 cut(s) 186, 876
HpyF10VI GCNNNNNNNGC 2 cut(s) 50, 491
HpyF3I CTNAG 3 cut(s) 302, 520, 717
HpySE526I ACGT 2 cut(s) 186, 876
Hsp92II CATG 7 cut(s) 27, 151, 202, 387, 676, 905, 912
Kpn2I TCCGGA 1 cut(s) 739
Kzo9I GATC 1 cut(s) 468
LmnI GCTCC 2 cut(s) 385, 539
Lsp1109I GCAGC 1 cut(s) 708
LweI GCATC 3 cut(s) 294, 716, 722
MabI ACCWGGT 1 cut(s) 273
MaeII ACGT 2 cut(s) 186, 876
MaeIII GTNAC 3 cut(s) 277, 444, 544
MalI GATC 1 cut(s) 470
MboI GATC 1 cut(s) 468
MboII GAAGA 3 cut(s) 346, 771, 851
MflI RGATCY 1 cut(s) 468
MluCI AATT 3 cut(s) 450, 525, 639
MlyI GAGTC 1 cut(s) 623
MmeI TCCRAC 2 cut(s) 196, 747
MnlI CCTC 3 cut(s) 241, 800, 829
MroI TCCGGA 1 cut(s) 739
MseI TTAA 5 cut(s) 252, 314, 350, 569, 693
MslI CAYNNNNRTG 2 cut(s) 110, 252
MspA1I CMGCKG 1 cut(s) 721
MspI CCGG 2 cut(s) 131, 740
MspR9I CCNGG 2 cut(s) 275, 628
MvaI CCWGG 2 cut(s) 275, 628
MwoI GCNNNNNNNGC 2 cut(s) 50, 491
NcoI CCATGG 1 cut(s) 901
NdeII GATC 1 cut(s) 468
NlaIII CATG 7 cut(s) 27, 151, 202, 387, 676, 905, 912
NmuCI GTSAC 1 cut(s) 444
NspI RCATGY 2 cut(s) 27, 202
NspV TTCGAA 1 cut(s) 9
PciI ACATGT 2 cut(s) 23, 198
PfeI GAWTC 2 cut(s) 244, 747
Pfl23II CGTACG 1 cut(s) 234
PkrI GCNGC 1 cut(s) 723
PleI GAGTC 1 cut(s) 622
PmaCI CACGTG 1 cut(s) 877
PmlI CACGTG 1 cut(s) 877
PpsI GAGTC 1 cut(s) 622
Ppu21I YACGTR 1 cut(s) 877
PscI ACATGT 2 cut(s) 23, 198
PshAI GACNNNNGTC 1 cut(s) 886
Psp6I CCWGG 2 cut(s) 273, 626
PspCI CACGTG 1 cut(s) 877
PspGI CCWGG 2 cut(s) 273, 626
PspLI CGTACG 1 cut(s) 234
PsuI RGATCY 1 cut(s) 468
PvuII CAGCTG 1 cut(s) 721
RsaI GTAC 3 cut(s) 236, 265, 677
RsaNI GTAC 3 cut(s) 235, 264, 676
RseI CAYNNNNRTG 2 cut(s) 110, 252
SaqAI TTAA 5 cut(s) 252, 314, 350, 569, 693
SatI GCNGC 1 cut(s) 722
Sau3AI GATC 1 cut(s) 468
SchI GAGTC 1 cut(s) 623
ScrFI CCNGG 2 cut(s) 275, 628
SexAI ACCWGGT 1 cut(s) 273
SfaNI GCATC 3 cut(s) 294, 716, 722
SfuI TTCGAA 1 cut(s) 9
SmiMI CAYNNNNRTG 2 cut(s) 110, 252
SmlI CTYRAG 1 cut(s) 422
SmoI CTYRAG 1 cut(s) 422
Sse9I AATT 3 cut(s) 450, 525, 639
StyD4I CCNGG 2 cut(s) 273, 626
StyI CCWWGG 3 cut(s) 176, 410, 901
TaaI ACNGT 1 cut(s) 601
TaiI ACGT 2 cut(s) 189, 879
TaqI TCGA 4 cut(s) 9, 553, 752, 890
TasI AATT 3 cut(s) 450, 525, 639
TatI WGTACW 1 cut(s) 675
TfiI GAWTC 2 cut(s) 244, 747
Tru1I TTAA 5 cut(s) 252, 314, 350, 569, 693
Tru9I TTAA 5 cut(s) 252, 314, 350, 569, 693
TscAI CASTG 2 cut(s) 172, 217
TseFI GTSAC 1 cut(s) 444
TseI GCWGC 1 cut(s) 721
Tsp45I GTSAC 1 cut(s) 444
TspDTI ATGAA 3 cut(s) 94, 236, 842
TspRI CASTG 2 cut(s) 172, 217
XapI RAATTY 1 cut(s) 450
XceI RCATGY 2 cut(s) 27, 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.