Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0007832

Physical Location & Seq

Genomic Coordinates Reverse (-)

8472488 .. 8475854

Gene Structure 3367 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g12250.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGCCCAAGATGATCAGCAAACCGCTGTTGCTGACTTACTTTTACCTGTTCATCTACATTCTGCTTTCGTCCGGTGTTATATTGTACAACAAGTGGGTTCTGTCTCCGAAATACTTCAATTTTCCATTACCCATCACACTTACAATGATTCATATGGGATTTTCTGGACTAGTAGCATTTCTTCTTGTTCGTGTTTTCAAGGTTGTAGCTCCTGTCAAAATGACATTTGAAATATATGCAACTTGTGTAATTCCAATCAGTGCCTTCTTTGCATCAAGTCTTTGGTTTGGAAACACTGCTTACTTGCATATTTCAGTGGCGTTCATCCAAATGCTTAAAGCTCTAATGCCAGTGGCTACTTTTATCATGGCTGTATTGTGTGGCACTGACAAACCAAGGTGCGATGTGTTCACAAACATGTTGCTGGTCAGTGTTGGAGTTGTCATTTCCTCATACGGGGAGATTCATTTTAATGTAGTTGGTACAGTGTACCAGGTTACAGGCATCTTTGCAGAAGCTCTTAGACTGGTCTTAACACAAGTCCTTCTACAGAAGAAAGGCTTGACTCTAAATCCGATCACCAGCTTGTACTATATCGCCCCATGCAGCTTTGTCTTCCTGTTTGTGCCTTGGTTGTTACTTGAGAAGTCTGCAATAGAATATTCACAGTTTCAGTTCAACTTCTGGATCTTTTTCTCCAATGCTCTTTGTGCTTTGGCGTTGAACTTCTCCATATTCTTAGTGATTGGTAGAACTGGAGCAGTTACCATCCGGGTTGCTGGTGTTCTGAAAGACTGGATATTGATTGCCCTTTCAACTGTTATATTTCCAGAGTCTATTATAACCAGGCTGAACATAATCGGTTATGCCATAGCACTGTGTGGGGTTGTCATGTACAATTACATAAAGGTTAAGGATGTTCGTGCATCTCAGCTACCTTCTGAAAGCATTCCCGAGAGAATTTCGAAGGATTGGAAGATGGAGAAAAAGTCCTCTGATATTTTTATCCCTGGAGGGACTGTTTCAGCCTCTGATGATGTTGATGAAGAAACACCCTTAACTCAATCAACAAGGTTGTCTCACATTGGACGAACACAGGCCGGCAACTATGCTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0012505 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

373

Amino Acids

41.54

Weight (kDa)

9.09

Isoelectric Point (pI)

33.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007832)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48230 AT1G48230 AT3G17430 AT3G17430
fragaria_vesca	FvH4_4g21460 FvH4_4g21460 FvH4_4g21460 FvH4_4g21460
malus_domestica	MD13G1141000.v1.1 MD16G1137100.v1.1
prunus_persica	Prupe.1G106200_v2.0.a1 Prupe.1G106200_v2.0.a1
pyrus_communis	pycom13g12250
rosa_chinensis	RchiOBHm_Chr4g0427391
rosa_laevigata	RLG00000007247
rosa_multiflora	Rmu_ssc0000351.1_g000008
rosa_roxburghii	Rroxscaffold_5G00369060
rosa_rugosa	Rorug04G0217700
rosa_samantha	Rh4AG273700 Rh4BG279300 Rh4CG294600 Rh4DG276800
rosa_wichuraiana	Rw4G023740 Rw4G023800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	842
AciI	CCGC	1 cut(s)	23
AclWI	GGATC	1 cut(s)	695
AcsI	RAATTY	1 cut(s)	960
AdeI	CACNNNGTG	1 cut(s)	881
AfaI	GTAC	5 cut(s)	86, 484, 491, 590, 896
AfiI	CCNNNNNNNGG	1 cut(s)	456
AflIII	ACRYGT	1 cut(s)	417
AgsI	TTSAA	6 cut(s)	118, 199, 230, 679, 724, 816
AhlI	ACTAGT	1 cut(s)	169
AjnI	CCWGG	3 cut(s)	492, 845, 1009
AluBI	AGCT	6 cut(s)	209, 341, 518, 585, 609, 934
AluI	AGCT	6 cut(s)	209, 341, 518, 585, 609, 934
Alw26I	GTCTC	2 cut(s)	108, 1083
AlwI	GGATC	1 cut(s)	695
AlwNI	CAGNNNCTG	1 cut(s)	1031
Ama87I	CYCGRG	1 cut(s)	953
AoxI	GGCC	1 cut(s)	1098
ApeKI	GCWGC	2 cut(s)	606, 1112
ApoI	RAATTY	1 cut(s)	960
Asp700I	GAANNNNTTC	2 cut(s)	113, 948
AsuC2I	CCSGG	1 cut(s)	773
AsuHPI	GGTGA	1 cut(s)	571
AsuII	TTCGAA	1 cut(s)	965
AvaI	CYCGRG	1 cut(s)	953
BarI	GAAGNNNNNNTAC	2 cut(s)	165, 197
BbsI	GAAGAC	1 cut(s)	607
BbvI	GCAGC	2 cut(s)	618, 1099
BccI	CCATC	3 cut(s)	140, 776, 973
BciT130I	CCWGG	3 cut(s)	494, 847, 1011
BclI	TGATCA	1 cut(s)	12
BcnI	CCSGG	1 cut(s)	773
BcoDI	GTCTC	2 cut(s)	108, 1083
BcuI	ACTAGT	1 cut(s)	169
BfaI	CTAG	1 cut(s)	170
BfmI	CTRYAG	1 cut(s)	548
BisI	GCNGC	2 cut(s)	607, 1113
BlsI	GCNGC	2 cut(s)	608, 1114
Bme1390I	CCNGG	4 cut(s)	494, 773, 847, 1011
BmeT110I	CYCGRG	1 cut(s)	953
BmrFI	CCNGG	4 cut(s)	494, 773, 847, 1011
BmsI	GCATC	3 cut(s)	281, 513, 935
BpiI	GAAGAC	1 cut(s)	607
BpmI	CTGGAG	2 cut(s)	777, 1032
Bpu14I	TTCGAA	1 cut(s)	965
BpuEI	CTTGAG	1 cut(s)	662
BpuMI	CCSGG	1 cut(s)	773
BsaJI	CCNNGG	3 cut(s)	395, 629, 1009
BsaWI	WCCGGW	1 cut(s)	71
BsaXI	ACNNNNNCTCC	4 cut(s)	974, 1004, 1005, 1035
Bsc4I	CCNNNNNNNGG	1 cut(s)	456
Bse118I	RCCGGY	1 cut(s)	1100
Bse1I	ACTGG	4 cut(s)	350, 531, 760, 800
BseBI	CCWGG	3 cut(s)	494, 847, 1011
BseDI	CCNNGG	3 cut(s)	395, 629, 1009
BseGI	GGATG	3 cut(s)	324, 768, 922
BseLI	CCNNNNNNNGG	1 cut(s)	456
BseMII	CTCAG	1 cut(s)	944
BseNI	ACTGG	4 cut(s)	350, 531, 760, 800
BseXI	GCAGC	2 cut(s)	618, 1099
BshFI	GGCC	1 cut(s)	1100
BsiHKCI	CYCGRG	1 cut(s)	953
BsiSI	CCGG	3 cut(s)	72, 772, 1101
BslFI	GGGAC	1 cut(s)	1030
BslI	CCNNNNNNNGG	1 cut(s)	456
BsmAI	GTCTC	2 cut(s)	108, 1083
BsmFI	GGGAC	1 cut(s)	1030
BsmI	GAATGC	1 cut(s)	948
BsnI	GGCC	1 cut(s)	1100
BsoBI	CYCGRG	1 cut(s)	953
Bsp119I	TTCGAA	1 cut(s)	965
Bsp1407I	TGTACA	2 cut(s)	84, 894
Bsp143I	GATC	3 cut(s)	12, 576, 687
BspACI	CCGC	1 cut(s)	23
BspANI	GGCC	1 cut(s)	1100
BspCNI	CTCAG	1 cut(s)	943
BspPI	GGATC	1 cut(s)	695
BspT104I	TTCGAA	1 cut(s)	965
BsrFI	RCCGGY	1 cut(s)	1100
BsrGI	TGTACA	2 cut(s)	84, 894
BsrI	ACTGG	4 cut(s)	350, 531, 760, 800
BssAI	RCCGGY	1 cut(s)	1100
BssECI	CCNNGG	3 cut(s)	395, 629, 1009
BssMI	GATC	3 cut(s)	12, 576, 687
BssT1I	CCWWGG	2 cut(s)	395, 629
Bst2UI	CCWGG	3 cut(s)	494, 847, 1011
Bst4CI	ACNGT	5 cut(s)	487, 669, 820, 879, 1021
BstAUI	TGTACA	2 cut(s)	84, 894
BstBI	TTCGAA	1 cut(s)	965
BstC8I	GCNNGC	1 cut(s)	1102
BstDEI	CTNAG	3 cut(s)	521, 739, 930
BstF5I	GGATG	3 cut(s)	324, 768, 922
BstKTI	GATC	3 cut(s)	15, 579, 690
BstMAI	GTCTC	2 cut(s)	108, 1083
BstMBI	GATC	3 cut(s)	12, 576, 687
BstMWI	GCNNNNNNNGC	2 cut(s)	269, 710
BstNI	CCWGG	3 cut(s)	494, 847, 1011
BstNSI	RCATGY	1 cut(s)	421
BstSCI	CCNGG	4 cut(s)	492, 771, 845, 1009
BstSFI	CTRYAG	1 cut(s)	548
BstV1I	GCAGC	2 cut(s)	618, 1099
BstV2I	GAAGAC	1 cut(s)	607
BstX2I	RGATCY	1 cut(s)	687
BstYI	RGATCY	1 cut(s)	687
BsuRI	GGCC	1 cut(s)	1100
BtgZI	GCGATG	1 cut(s)	417
BtsCI	GGATG	3 cut(s)	324, 768, 922
BtsI	GCAGTG	1 cut(s)	294
BtsIMutI	CAGTG	8 cut(s)	265, 294, 321, 357, 384, 436, 492, 875
Cac8I	GCNNGC	1 cut(s)	1102
CaiI	CAGNNNCTG	1 cut(s)	1031
Cfr10I	RCCGGY	1 cut(s)	1100
CsiI	ACCWGGT	1 cut(s)	492
Csp6I	GTAC	5 cut(s)	85, 483, 490, 589, 895
CviAII	CATG	5 cut(s)	367, 418, 603, 892, 1116
CviQI	GTAC	5 cut(s)	85, 483, 490, 589, 895
DdeI	CTNAG	3 cut(s)	521, 739, 930
DpnI	GATC	3 cut(s)	14, 578, 689
DpnII	GATC	3 cut(s)	12, 576, 687
DraIII	CACNNNGTG	1 cut(s)	881
Eco130I	CCWWGG	2 cut(s)	395, 629
Eco88I	CYCGRG	1 cut(s)	953
EcoRII	CCWGG	3 cut(s)	492, 845, 1009
EcoT14I	CCWWGG	2 cut(s)	395, 629
ErhI	CCWWGG	2 cut(s)	395, 629
FaeI	CATG	5 cut(s)	370, 421, 606, 895, 1119
FalI	AAGNNNNNCTT	2 cut(s)	545, 577
FaqI	GGGAC	1 cut(s)	1030
FatI	CATG	5 cut(s)	366, 417, 602, 891, 1115
FauNDI	CATATG	1 cut(s)	153
FbaI	TGATCA	1 cut(s)	12
Fnu4HI	GCNGC	2 cut(s)	607, 1113
FokI	GGATG	3 cut(s)	311, 755, 929
Fsp4HI	GCNGC	2 cut(s)	607, 1113
FspBI	CTAG	1 cut(s)	170
GluI	GCNGC	2 cut(s)	607, 1113
GsuI	CTGGAG	2 cut(s)	777, 1032
HaeIII	GGCC	1 cut(s)	1100
HapII	CCGG	3 cut(s)	72, 772, 1101
Hin1II	CATG	5 cut(s)	370, 421, 606, 895, 1119
HinfI	GANTC	4 cut(s)	148, 463, 565, 833
HpaII	CCGG	3 cut(s)	72, 772, 1101
HphI	GGTGA	1 cut(s)	571
Hpy166II	GTNNAC	2 cut(s)	411, 490
Hpy188I	TCNGA	6 cut(s)	108, 576, 789, 943, 997, 1033
Hpy188III	TCNNGA	4 cut(s)	165, 685, 830, 953
Hpy8I	GTNNAC	2 cut(s)	411, 490
HpyAV	CCTTC	4 cut(s)	274, 554, 948, 961
HpyCH4III	ACNGT	5 cut(s)	487, 669, 820, 879, 1021
HpyCH4V	TGCA	8 cut(s)	239, 272, 307, 512, 606, 653, 926, 1115
HpyF10VI	GCNNNNNNNGC	2 cut(s)	269, 710
HpyF3I	CTNAG	3 cut(s)	521, 739, 930
Hsp92II	CATG	5 cut(s)	370, 421, 606, 895, 1119
KroI	GCCGGC	1 cut(s)	1100
KroNI	GCCGGC	1 cut(s)	1102
Ksp22I	TGATCA	1 cut(s)	12
Kzo9I	GATC	3 cut(s)	12, 576, 687
LmnI	GCTCC	2 cut(s)	214, 758
Lsp1109I	GCAGC	2 cut(s)	618, 1099
LweI	GCATC	3 cut(s)	281, 513, 935
MabI	ACCWGGT	1 cut(s)	492
MaeI	CTAG	1 cut(s)	170
MaeIII	GTNAC	3 cut(s)	496, 636, 763
MalI	GATC	3 cut(s)	14, 578, 689
MboI	GATC	3 cut(s)	12, 576, 687
MboII	GAAGA	5 cut(s)	173, 565, 607, 988, 1058
MflI	RGATCY	1 cut(s)	687
MluCI	AATT	4 cut(s)	118, 249, 898, 960
MlyI	GAGTC	2 cut(s)	559, 842
MmeI	TCCRAC	1 cut(s)	415
MnlI	CCTC	4 cut(s)	460, 1003, 1007, 1039
MroNI	GCCGGC	1 cut(s)	1100
MroXI	GAANNNNTTC	2 cut(s)	113, 948
MseI	TTAA	5 cut(s)	336, 471, 533, 912, 1058
MslI	CAYNNNNRTG	3 cut(s)	329, 416, 471
MspA1I	CMGCKG	1 cut(s)	25
MspI	CCGG	3 cut(s)	72, 772, 1101
MspR9I	CCNGG	4 cut(s)	494, 773, 847, 1011
Mva1269I	GAATGC	1 cut(s)	948
MvaI	CCWGG	3 cut(s)	494, 847, 1011
MwoI	GCNNNNNNNGC	2 cut(s)	269, 710
NaeI	GCCGGC	1 cut(s)	1102
NciI	CCSGG	1 cut(s)	773
NdeI	CATATG	1 cut(s)	153
NdeII	GATC	3 cut(s)	12, 576, 687
NgoMIV	GCCGGC	1 cut(s)	1100
NlaIII	CATG	5 cut(s)	370, 421, 606, 895, 1119
NspI	RCATGY	1 cut(s)	421
NspV	TTCGAA	1 cut(s)	965
PciI	ACATGT	1 cut(s)	417
PctI	GAATGC	1 cut(s)	948
PdiI	GCCGGC	1 cut(s)	1102
PdmI	GAANNNNTTC	2 cut(s)	113, 948
PfeI	GAWTC	2 cut(s)	148, 463
PkrI	GCNGC	2 cut(s)	608, 1114
PleI	GAGTC	2 cut(s)	559, 841
PpsI	GAGTC	2 cut(s)	559, 841
PscI	ACATGT	1 cut(s)	417
PsiI	TTATAA	1 cut(s)	842
Psp6I	CCWGG	3 cut(s)	492, 845, 1009
PspGI	CCWGG	3 cut(s)	492, 845, 1009
PstNI	CAGNNNCTG	1 cut(s)	1031
PsuI	RGATCY	1 cut(s)	687
RsaI	GTAC	5 cut(s)	86, 484, 491, 590, 896
RsaNI	GTAC	5 cut(s)	85, 483, 490, 589, 895
RseI	CAYNNNNRTG	3 cut(s)	329, 416, 471
SaqAI	TTAA	5 cut(s)	336, 471, 533, 912, 1058
SatI	GCNGC	2 cut(s)	607, 1113
Sau3AI	GATC	3 cut(s)	12, 576, 687
SchI	GAGTC	2 cut(s)	559, 842
ScrFI	CCNGG	4 cut(s)	494, 773, 847, 1011
SexAI	ACCWGGT	1 cut(s)	492
SfaNI	GCATC	3 cut(s)	281, 513, 935
SfcI	CTRYAG	1 cut(s)	548
SfuI	TTCGAA	1 cut(s)	965
SmiMI	CAYNNNNRTG	3 cut(s)	329, 416, 471
SmlI	CTYRAG	1 cut(s)	641
SmoI	CTYRAG	1 cut(s)	641
SpeI	ACTAGT	1 cut(s)	169
Sse9I	AATT	4 cut(s)	118, 249, 898, 960
SsiI	CCGC	1 cut(s)	23
SspI	AATATT	1 cut(s)	662
SspMI	CTAG	1 cut(s)	170
StyD4I	CCNGG	4 cut(s)	492, 771, 845, 1009
StyI	CCWWGG	2 cut(s)	395, 629
TaaI	ACNGT	5 cut(s)	487, 669, 820, 879, 1021
TaqI	TCGA	1 cut(s)	965
TasI	AATT	4 cut(s)	118, 249, 898, 960
TatI	WGTACW	3 cut(s)	84, 588, 894
TfiI	GAWTC	2 cut(s)	148, 463
Tru1I	TTAA	5 cut(s)	336, 471, 533, 912, 1058
Tru9I	TTAA	5 cut(s)	336, 471, 533, 912, 1058
TscAI	CASTG	8 cut(s)	265, 301, 321, 357, 391, 436, 492, 882
TseI	GCWGC	2 cut(s)	606, 1112
TspDTI	ATGAA	5 cut(s)	40, 140, 313, 455, 1059
TspRI	CASTG	8 cut(s)	265, 301, 321, 357, 391, 436, 492, 882
XapI	RAATTY	1 cut(s)	960
XceI	RCATGY	1 cut(s)	421
XmnI	GAANNNNTTC	2 cut(s)	113, 948
XspI	CTAG	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.