Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0007832

Physical Location & Seq

Genomic Coordinates Forward (+)

37621964 .. 37623786

Gene Structure 1823 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0217700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGATTCTTCCTTTTCATAAAAACAAGCACAACCCAATCAGGATTTTGATTCCCACCCAAGATTGGCCTTCACTTTTCACCCACAGGGCATCTTTGTTTTTCCTCCTATTATTAATCTTCTTGGCTCTATCTTCCTTCTTCCCCACTGAAGCCATGAAGGTCCATCCAATCCCCAAGAGGCGCAACATCTCCATCCAGTACCATTCCAGAAGCCCGCTCTCTGAAGCCCAGGCCCTCCTCGGCCTCACCCACAAGAAGCTCCGCCGCCTCCCCCACGTCTTCAGCCGCGTCCTCGAGCTCCCTTTCCGCTCCGACGCCGACGTCCTCATCGAGGAGAACCCCGACTGCTTCCGCTTCGTCGCCGAAACCGAGAGCTTCGGCCACGACGTCAGGGCCCACACCGTCGAAATCCACCCCGGGGTGACCAAGGTTGTCGTCAGGGAAAGAGGGTCCGCGGCGGAGCTGACGTTGGACGAGCTGGAGCTCGACATGTGGAGGTTCCGGCTCCCGGAGTCGACCCGGCCGGAGCTGGCCAGGGCGGTTTTTGTCGACGGGGAGCTCATTGTGACGGTGCCGAAGATGGAGGGGATGGAGAATTCGGAGGGCGGCGGCGGCGGCGGTGGGAATGGGGGGTTCAGAGGAGGTATGGGAAATCGGCTTGTGCTTGTACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0012505 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

224

Amino Acids

25.24

Weight (kDa)

8.01

Isoelectric Point (pI)

53.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007832)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48230 AT1G48230 AT3G17430 AT3G17430
fragaria_vesca	FvH4_4g21460 FvH4_4g21460 FvH4_4g21460 FvH4_4g21460
malus_domestica	MD13G1141000.v1.1 MD16G1137100.v1.1
prunus_persica	Prupe.1G106200_v2.0.a1 Prupe.1G106200_v2.0.a1
pyrus_communis	pycom13g12250
rosa_chinensis	RchiOBHm_Chr4g0427391
rosa_laevigata	RLG00000007247
rosa_multiflora	Rmu_ssc0000351.1_g000008
rosa_roxburghii	Rroxscaffold_5G00369060
rosa_rugosa	Rorug04G0217700
rosa_samantha	Rh4AG273700 Rh4BG279300 Rh4CG294600 Rh4DG276800
rosa_wichuraiana	Rw4G023740 Rw4G023800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	320
AatII	GACGTC	2 cut(s)	324, 390
AccB1I	GGYRCC	1 cut(s)	571
AccBSI	CCGCTC	2 cut(s)	217, 309
AccI	GTMKAC	2 cut(s)	515, 549
AccII	CGCG	2 cut(s)	288, 455
AcoI	YGGCCR	3 cut(s)	379, 521, 531
AcsI	RAATTY	1 cut(s)	595
AcuI	CTGAAG	3 cut(s)	168, 243, 265
AcyI	GRCGYC	3 cut(s)	315, 321, 387
AfaI	GTAC	2 cut(s)	200, 669
AfiI	CCNNNNNNNGG	4 cut(s)	63, 331, 418, 508
AflIII	ACRYGT	1 cut(s)	489
AjiI	CACGTC	1 cut(s)	277
AjnI	CCWGG	2 cut(s)	228, 533
AluBI	AGCT	8 cut(s)	259, 298, 375, 463, 478, 484, 529, 559
AluI	AGCT	8 cut(s)	259, 298, 375, 463, 478, 484, 529, 559
Alw21I	GWGCWC	3 cut(s)	300, 486, 561
Ama87I	CYCGRG	2 cut(s)	293, 416
AoxI	GGCC	7 cut(s)	65, 231, 241, 379, 393, 521, 531
ApaI	GGGCCC	1 cut(s)	397
ApoI	RAATTY	1 cut(s)	595
AseI	ATTAAT	1 cut(s)	113
AspLEI	GCGC	1 cut(s)	183
AspS9I	GGNCC	5 cut(s)	160, 232, 393, 394, 450
AsuC2I	CCSGG	4 cut(s)	417, 418, 509, 520
AsuHPI	GGTGA	3 cut(s)	70, 238, 433
AvaI	CYCGRG	2 cut(s)	293, 416
AvaII	GGWCC	2 cut(s)	160, 450
BaeGI	GKGCMC	1 cut(s)	397
BalI	TGGCCA	1 cut(s)	533
BanI	GGYRCC	1 cut(s)	571
BanII	GRGCYC	4 cut(s)	300, 397, 486, 561
BbsI	GAAGAC	1 cut(s)	271
Bbv12I	GWGCWC	3 cut(s)	300, 486, 561
BccI	CCATC	4 cut(s)	171, 200, 574, 583
BciT130I	CCWGG	2 cut(s)	230, 535
BcnI	CCSGG	4 cut(s)	417, 418, 509, 520
BisI	GCNGC	7 cut(s)	265, 286, 456, 607, 610, 613, 616
BlsI	GCNGC	7 cut(s)	266, 287, 457, 608, 611, 614, 617
Bme1390I	CCNGG	6 cut(s)	230, 417, 418, 509, 520, 535
Bme18I	GGWCC	2 cut(s)	160, 450
BmeT110I	CYCGRG	2 cut(s)	293, 416
BmgBI	CACGTC	1 cut(s)	277
BmgT120I	GGNCC	5 cut(s)	160, 232, 393, 394, 450
BmiI	GGNNCC	5 cut(s)	395, 451, 500, 506, 573
BmrFI	CCNGG	6 cut(s)	230, 417, 418, 509, 520, 535
BmsI	GCATC	1 cut(s)	98
BpiI	GAAGAC	1 cut(s)	271
BpmI	CTGGAG	1 cut(s)	500
BpuMI	CCSGG	4 cut(s)	417, 418, 509, 520
BsaHI	GRCGYC	3 cut(s)	315, 321, 387
BsaJI	CCNNGG	8 cut(s)	228, 238, 415, 416, 417, 426, 453, 534
BsaXI	ACNNNNNCTCC	2 cut(s)	452, 482
Bsc4I	CCNNNNNNNGG	4 cut(s)	63, 331, 418, 508
Bse1I	ACTGG	1 cut(s)	196
BseBI	CCWGG	2 cut(s)	230, 535
BseDI	CCNNGG	8 cut(s)	228, 238, 415, 416, 417, 426, 453, 534
BseGI	GGATG	3 cut(s)	163, 192, 594
BseLI	CCNNNNNNNGG	4 cut(s)	63, 331, 418, 508
BseNI	ACTGG	1 cut(s)	196
BseRI	GAGGAG	3 cut(s)	227, 347, 654
BseSI	GKGCMC	1 cut(s)	397
BseX3I	CGGCCG	1 cut(s)	521
Bsh1236I	CGCG	2 cut(s)	288, 455
Bsh1285I	CGRYCG	1 cut(s)	524
BshFI	GGCC	7 cut(s)	67, 233, 243, 381, 395, 523, 533
BshNI	GGYRCC	1 cut(s)	571
BsiEI	CGRYCG	1 cut(s)	524
BsiHKAI	GWGCWC	3 cut(s)	300, 486, 561
BsiHKCI	CYCGRG	2 cut(s)	293, 416
BsiSI	CCGG	5 cut(s)	417, 502, 509, 520, 524
BslI	CCNNNNNNNGG	4 cut(s)	63, 331, 418, 508
BsnI	GGCC	7 cut(s)	67, 233, 243, 381, 395, 523, 533
BsoBI	CYCGRG	2 cut(s)	293, 416
Bsp120I	GGGCCC	1 cut(s)	393
Bsp1286I	GDGCHC	4 cut(s)	300, 397, 486, 561
Bsp1407I	TGTACA	1 cut(s)	667
BspANI	GGCC	7 cut(s)	67, 233, 243, 381, 395, 523, 533
BspFNI	CGCG	2 cut(s)	288, 455
BspLI	GGNNCC	5 cut(s)	395, 451, 500, 506, 573
BspT107I	GGYRCC	1 cut(s)	571
BsrBI	CCGCTC	2 cut(s)	217, 309
BsrGI	TGTACA	1 cut(s)	667
BsrI	ACTGG	1 cut(s)	196
BssECI	CCNNGG	8 cut(s)	228, 238, 415, 416, 417, 426, 453, 534
BssNI	GRCGYC	3 cut(s)	315, 321, 387
BssT1I	CCWWGG	1 cut(s)	426
Bst2UI	CCWGG	2 cut(s)	230, 535
Bst4CI	ACNGT	3 cut(s)	403, 571, 672
BstACI	GRCGYC	3 cut(s)	315, 321, 387
BstAUI	TGTACA	1 cut(s)	667
BstC8I	GCNNGC	2 cut(s)	215, 531
BstDSI	CCRYGG	1 cut(s)	453
BstEII	GGTNACC	1 cut(s)	421
BstENI	CCTNNNNNAGG	1 cut(s)	329
BstF5I	GGATG	3 cut(s)	163, 192, 594
BstFNI	CGCG	2 cut(s)	288, 455
BstHHI	GCGC	1 cut(s)	183
BstMCI	CGRYCG	1 cut(s)	524
BstMWI	GCNNNNNNNGC	2 cut(s)	612, 615
BstNI	CCWGG	2 cut(s)	230, 535
BstNSI	RCATGY	1 cut(s)	493
BstPI	GGTNACC	1 cut(s)	421
BstSCI	CCNGG	6 cut(s)	228, 415, 416, 507, 518, 533
BstSLI	GKGCMC	1 cut(s)	397
BstUI	CGCG	2 cut(s)	288, 455
BstV2I	GAAGAC	1 cut(s)	271
BstZI	CGGCCG	1 cut(s)	521
BsuRI	GGCC	7 cut(s)	67, 233, 243, 381, 395, 523, 533
BtgI	CCRYGG	1 cut(s)	453
BtrI	CACGTC	1 cut(s)	277
BtsCI	GGATG	3 cut(s)	163, 192, 594
BtsIMutI	CAGTG	1 cut(s)	144
Cac8I	GCNNGC	2 cut(s)	215, 531
CfoI	GCGC	1 cut(s)	183
Cfr13I	GGNCC	5 cut(s)	160, 232, 393, 394, 450
Cfr42I	CCGCGG	1 cut(s)	456
Cfr9I	CCCGGG	1 cut(s)	416
CseI	GACGC	2 cut(s)	277, 323
Csp6I	GTAC	2 cut(s)	199, 668
CviAII	CATG	2 cut(s)	154, 490
CviQI	GTAC	2 cut(s)	199, 668
DrdI	GACNNNNNNGTC	1 cut(s)	320
DseDI	GACNNNNNNGTC	1 cut(s)	320
EaeI	YGGCCR	3 cut(s)	379, 521, 531
EagI	CGGCCG	1 cut(s)	521
EciI	GGCGGA	2 cut(s)	251, 473
Ecl136II	GAGCTC	3 cut(s)	298, 484, 559
EclXI	CGGCCG	1 cut(s)	521
Eco130I	CCWWGG	1 cut(s)	426
Eco24I	GRGCYC	4 cut(s)	300, 397, 486, 561
Eco47I	GGWCC	2 cut(s)	160, 450
Eco52I	CGGCCG	1 cut(s)	521
Eco53kI	GAGCTC	3 cut(s)	298, 484, 559
Eco57I	CTGAAG	3 cut(s)	168, 243, 265
Eco88I	CYCGRG	2 cut(s)	293, 416
Eco91I	GGTNACC	1 cut(s)	421
EcoICRI	GAGCTC	3 cut(s)	298, 484, 559
EcoNI	CCTNNNNNAGG	1 cut(s)	329
EcoO109I	RGGNCCY	2 cut(s)	232, 393
EcoO65I	GGTNACC	1 cut(s)	421
EcoRI	GAATTC	1 cut(s)	595
EcoRII	CCWGG	2 cut(s)	228, 533
EcoT14I	CCWWGG	1 cut(s)	426
EcoT38I	GRGCYC	4 cut(s)	300, 397, 486, 561
ErhI	CCWWGG	1 cut(s)	426
FaeI	CATG	2 cut(s)	157, 493
FaiI	YATR	4 cut(s)	18, 155, 491, 647
FatI	CATG	2 cut(s)	153, 489
FauI	CCCGC	1 cut(s)	222
FblI	GTMKAC	2 cut(s)	515, 549
Fnu4HI	GCNGC	7 cut(s)	265, 286, 456, 607, 610, 613, 616
FokI	GGATG	3 cut(s)	150, 179, 601
FriOI	GRGCYC	4 cut(s)	300, 397, 486, 561
Fsp4HI	GCNGC	7 cut(s)	265, 286, 456, 607, 610, 613, 616
GlaI	GCGC	1 cut(s)	182
GluI	GCNGC	7 cut(s)	265, 286, 456, 607, 610, 613, 616
GsuI	CTGGAG	1 cut(s)	500
HaeIII	GGCC	7 cut(s)	67, 233, 243, 381, 395, 523, 533
HapII	CCGG	5 cut(s)	417, 502, 509, 520, 524
HgaI	GACGC	2 cut(s)	277, 323
HhaI	GCGC	1 cut(s)	183
Hin1I	GRCGYC	3 cut(s)	315, 321, 387
Hin1II	CATG	2 cut(s)	157, 493
Hin6I	GCGC	1 cut(s)	181
HinP1I	GCGC	1 cut(s)	181
HincII	GTYRAC	2 cut(s)	516, 550
HindII	GTYRAC	2 cut(s)	516, 550
HinfI	GANTC	3 cut(s)	4, 49, 512
HpaII	CCGG	5 cut(s)	417, 502, 509, 520, 524
HphI	GGTGA	3 cut(s)	70, 238, 433
Hpy166II	GTNNAC	2 cut(s)	516, 550
Hpy188I	TCNGA	4 cut(s)	223, 313, 601, 638
Hpy188III	TCNNGA	2 cut(s)	40, 207
Hpy8I	GTNNAC	2 cut(s)	516, 550
Hpy99I	CGWCG	6 cut(s)	317, 323, 362, 389, 407, 554
HpyAV	CCTTC	3 cut(s)	78, 145, 151
HpyCH4III	ACNGT	3 cut(s)	403, 571, 672
HpyCH4IV	ACGT	4 cut(s)	276, 321, 387, 467
HpyF10VI	GCNNNNNNNGC	2 cut(s)	612, 615
HpySE526I	ACGT	4 cut(s)	276, 321, 387, 467
Hsp92I	GRCGYC	3 cut(s)	315, 321, 387
Hsp92II	CATG	2 cut(s)	157, 493
HspAI	GCGC	1 cut(s)	181
KspI	CCGCGG	1 cut(s)	456
LmnI	GCTCC	8 cut(s)	264, 303, 314, 460, 481, 510, 526, 556
LweI	GCATC	1 cut(s)	98
MaeII	ACGT	4 cut(s)	276, 321, 387, 467
MaeIII	GTNAC	2 cut(s)	421, 565
MbiI	CCGCTC	2 cut(s)	217, 309
MboII	GAAGA	5 cut(s)	109, 123, 130, 271, 589
MhlI	GDGCHC	4 cut(s)	300, 397, 486, 561
MlsI	TGGCCA	1 cut(s)	533
MluCI	AATT	1 cut(s)	595
MluNI	TGGCCA	1 cut(s)	533
MlyI	GAGTC	1 cut(s)	521
MmeI	TCCRAC	2 cut(s)	336, 450
Mox20I	TGGCCA	1 cut(s)	533
MscI	TGGCCA	1 cut(s)	533
MseI	TTAA	1 cut(s)	113
Msp20I	TGGCCA	1 cut(s)	533
MspA1I	CMGCKG	1 cut(s)	455
MspI	CCGG	5 cut(s)	417, 502, 509, 520, 524
MspR9I	CCNGG	6 cut(s)	230, 417, 418, 509, 520, 535
MvaI	CCWGG	2 cut(s)	230, 535
MvnI	CGCG	2 cut(s)	288, 455
MwoI	GCNNNNNNNGC	2 cut(s)	612, 615
NciI	CCSGG	4 cut(s)	417, 418, 509, 520
NlaIII	CATG	2 cut(s)	157, 493
NlaIV	GGNNCC	5 cut(s)	395, 451, 500, 506, 573
NmeAIII	GCCGAG	1 cut(s)	219
NmuCI	GTSAC	2 cut(s)	421, 565
NspI	RCATGY	1 cut(s)	493
PaeR7I	CTCGAG	1 cut(s)	293
PciI	ACATGT	1 cut(s)	489
PcsI	WCGNNNNNNNCGW	3 cut(s)	327, 366, 384
PfeI	GAWTC	2 cut(s)	4, 49
PfoI	TCCNGGA	1 cut(s)	507
PkrI	GCNGC	7 cut(s)	266, 287, 457, 608, 611, 614, 617
PleI	GAGTC	1 cut(s)	520
PpsI	GAGTC	1 cut(s)	520
PscI	ACATGT	1 cut(s)	489
PshBI	ATTAAT	1 cut(s)	113
Psp124BI	GAGCTC	3 cut(s)	300, 486, 561
Psp6I	CCWGG	2 cut(s)	228, 533
PspEI	GGTNACC	1 cut(s)	421
PspGI	CCWGG	2 cut(s)	228, 533
PspN4I	GGNNCC	5 cut(s)	395, 451, 500, 506, 573
PspOMI	GGGCCC	1 cut(s)	393
PspPI	GGNCC	5 cut(s)	160, 232, 393, 394, 450
PspXI	VCTCGAGB	1 cut(s)	293
RsaI	GTAC	2 cut(s)	200, 669
RsaNI	GTAC	2 cut(s)	199, 668
SacI	GAGCTC	3 cut(s)	300, 486, 561
SacII	CCGCGG	1 cut(s)	456
SalI	GTCGAC	2 cut(s)	514, 548
SaqAI	TTAA	1 cut(s)	113
SatI	GCNGC	7 cut(s)	265, 286, 456, 607, 610, 613, 616
Sau96I	GGNCC	5 cut(s)	160, 232, 393, 394, 450
SchI	GAGTC	1 cut(s)	521
ScrFI	CCNGG	6 cut(s)	230, 417, 418, 509, 520, 535
SduI	GDGCHC	4 cut(s)	300, 397, 486, 561
SfaNI	GCATC	1 cut(s)	98
Sfr274I	CTCGAG	1 cut(s)	293
Sfr303I	CCGCGG	1 cut(s)	456
SgrBI	CCGCGG	1 cut(s)	456
SinI	GGWCC	2 cut(s)	160, 450
SlaI	CTCGAG	1 cut(s)	293
SmaI	CCCGGG	1 cut(s)	418
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
Sse9I	AATT	1 cut(s)	595
SstI	GAGCTC	3 cut(s)	300, 486, 561
StyD4I	CCNGG	6 cut(s)	228, 415, 416, 507, 518, 533
StyI	CCWWGG	1 cut(s)	426
TaaI	ACNGT	3 cut(s)	403, 571, 672
TaiI	ACGT	4 cut(s)	279, 324, 390, 470
TaqI	TCGA	6 cut(s)	294, 330, 405, 486, 515, 549
TasI	AATT	1 cut(s)	595
TatI	WGTACW	1 cut(s)	667
TauI	GCSGC	7 cut(s)	267, 288, 458, 609, 612, 615, 618
TfiI	GAWTC	2 cut(s)	4, 49
Tru1I	TTAA	1 cut(s)	113
Tru9I	TTAA	1 cut(s)	113
TscAI	CASTG	1 cut(s)	151
TseFI	GTSAC	2 cut(s)	421, 565
Tsp45I	GTSAC	2 cut(s)	421, 565
TspDTI	ATGAA	2 cut(s)	5, 170
TspMI	CCCGGG	1 cut(s)	416
TspRI	CASTG	1 cut(s)	151
VpaK11BI	GGWCC	2 cut(s)	160, 450
VspI	ATTAAT	1 cut(s)	113
XagI	CCTNNNNNAGG	1 cut(s)	329
XapI	RAATTY	1 cut(s)	595
XceI	RCATGY	1 cut(s)	493
XhoI	CTCGAG	1 cut(s)	293
XmaI	CCCGGG	1 cut(s)	416
XmiI	GTMKAC	2 cut(s)	515, 549
ZraI	GACGTC	2 cut(s)	322, 388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.