Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0007832

Physical Location & Seq

Genomic Coordinates Reverse (-)

49564638 .. 49570225

Gene Structure 5588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G023800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGCAATTTAGGCTAGTCTGGTCTGAGTTAGATATCTGCATACAACGTTTGCTTTCTAGTTTGTACCATAGTTCTTGGGGTTTGCTTGGTTTTCCAACTTTGTTGTGCTACTTCAAATGGTGGAATAAAATTGTTTTGAGGTGCTGGATTGAGCTCCTGAACCAAGATTGCATACCCAATTTTGGATTGTGTTCAGTCCCATGCATACATATTGGTTTCTTTTTTCTTTTCTTTTTTTGTACAAACCGTGCATACTGGTTATGCACCAAGTATATCGATCTTGACATGTATAAACGATTGCGCCACGTTGTAGCTCCTGTCAAAATGACACTTGAAATATATGTAATGTGTGTAATACCAATAAGTGCCTTCTTTGCTTCAAGTCTTTGGTTTGGAAACACTGGTTACTTGCATATTTCTGGGGCTTTCATCCAAATGCTCAAAGCTCTAAAATCCAACTTATGTGGCACTGATAAACCAAGGTGCGACGTGGTCTCAAACATGTTGCTGGTCAGTGTTGGAGTTGTCTTTTCCTTGTACCGGGAGATTTATTTTAACGTAGTTGGTACACTTTCCCAGGTTACTGGCAACTTTGCAGAAGCTCTTAGGCTGGTCTTAACACAAGTCCTTCTGCAGAAGAAGGGTTTGACTTTAAATCCAATCACCAGCTTATACCATATAGCTCCATGCAGTTTCACAAATTCAGTTCAGCTTCTGGATTTTTTCTCCAATGCTCTATGTGCTTTGGCTTTGAACTTCTCGATATTCTTAGTAATTGGTAGAACTGAAGCAGTTACCATCCGAGTTGCTGGTGTTTTAAAAGACTGGATTTTGATTGCCCTAGCTTTCAATTGTTATATTTTCAGATTGGTCATTTACAACTACATAAAGGTTAAGGATGTGCGTGCATCTGCATCTCAGCTGCCTATTGACACTATTCCAGACAGAATATCAAAGTCTTCTGATATCTTTGTGCCTAATAATGGAGGGGGTTTATCCTCGGATATGAATGTGGACGAAGAAATAACACCCCTAACTCAATCATCAAGGTTGTCTCACGTGGAATGCTCGTCGATTAGCAACCATGATGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0012505 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

364

Amino Acids

41.2

Weight (kDa)

8.45

Isoelectric Point (pI)

29.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007832)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48230 AT1G48230 AT3G17430 AT3G17430
fragaria_vesca	FvH4_4g21460 FvH4_4g21460 FvH4_4g21460 FvH4_4g21460
malus_domestica	MD13G1141000.v1.1 MD16G1137100.v1.1
prunus_persica	Prupe.1G106200_v2.0.a1 Prupe.1G106200_v2.0.a1
pyrus_communis	pycom13g12250
rosa_chinensis	RchiOBHm_Chr4g0427391
rosa_laevigata	RLG00000007247
rosa_multiflora	Rmu_ssc0000351.1_g000008
rosa_roxburghii	Rroxscaffold_5G00369060
rosa_rugosa	Rorug04G0217700
rosa_samantha	Rh4AG273700 Rh4BG279300 Rh4CG294600 Rh4DG276800
rosa_wichuraiana	Rw4G023740 Rw4G023800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	46
AcsI	RAATTY	1 cut(s)	700
AcuI	CTGAAG	1 cut(s)	807
AcvI	CACGTG	1 cut(s)	1060
AfaI	GTAC	4 cut(s)	65, 241, 539, 568
AfiI	CCNNNNNNNGG	3 cut(s)	182, 540, 983
AflIII	ACRYGT	2 cut(s)	285, 501
AgsI	TTSAA	5 cut(s)	115, 335, 381, 754, 850
AjiI	CACGTC	1 cut(s)	490
AjnI	CCWGG	1 cut(s)	576
AluBI	AGCT	9 cut(s)	154, 314, 446, 602, 669, 683, 712, 845, 922
AluI	AGCT	9 cut(s)	154, 314, 446, 602, 669, 683, 712, 845, 922
Alw21I	GWGCWC	1 cut(s)	156
Alw26I	GTCTC	2 cut(s)	499, 1059
AlwNI	CAGNNNCTG	1 cut(s)	715
ApeKI	GCWGC	1 cut(s)	922
ApoI	RAATTY	1 cut(s)	700
AspLEI	GCGC	1 cut(s)	303
AsuC2I	CCSGG	1 cut(s)	542
AsuHPI	GGTGA	1 cut(s)	655
BanII	GRGCYC	1 cut(s)	156
BbrPI	CACGTG	1 cut(s)	1060
BbsI	GAAGAC	1 cut(s)	951
Bbv12I	GWGCWC	1 cut(s)	156
BbvI	GCAGC	1 cut(s)	909
BccI	CCATC	1 cut(s)	806
BciT130I	CCWGG	1 cut(s)	578
BcnI	CCSGG	1 cut(s)	542
BcoDI	GTCTC	2 cut(s)	499, 1059
BfaI	CTAG	3 cut(s)	14, 57, 842
BfmI	CTRYAG	1 cut(s)	632
BisI	GCNGC	1 cut(s)	923
BlsI	GCNGC	1 cut(s)	924
Bme1390I	CCNGG	2 cut(s)	542, 578
BmgBI	CACGTC	1 cut(s)	490
BmrFI	CCNGG	2 cut(s)	542, 578
BmsI	GCATC	3 cut(s)	917, 923, 1078
BpiI	GAAGAC	1 cut(s)	951
BpuMI	CCSGG	1 cut(s)	542
Bsa29I	ATCGAT	1 cut(s)	276
BsaAI	YACGTR	1 cut(s)	1060
BsaI	GGTCTC	1 cut(s)	499
BsaJI	CCNNGG	3 cut(s)	479, 576, 999
Bsc4I	CCNNNNNNNGG	3 cut(s)	182, 540, 983
Bse1I	ACTGG	4 cut(s)	260, 406, 589, 830
BseBI	CCWGG	1 cut(s)	578
BseCI	ATCGAT	1 cut(s)	276
BseDI	CCNNGG	3 cut(s)	479, 576, 999
BseGI	GGATG	3 cut(s)	429, 798, 904
BseLI	CCNNNNNNNGG	3 cut(s)	182, 540, 983
BseMII	CTCAG	2 cut(s)	15, 932
BseNI	ACTGG	4 cut(s)	260, 406, 589, 830
BseXI	GCAGC	1 cut(s)	909
BshVI	ATCGAT	1 cut(s)	276
BsiHKAI	GWGCWC	1 cut(s)	156
BsiSI	CCGG	1 cut(s)	541
BslFI	GGGAC	1 cut(s)	182
BslI	CCNNNNNNNGG	3 cut(s)	182, 540, 983
BsmAI	GTCTC	2 cut(s)	499, 1059
BsmFI	GGGAC	1 cut(s)	182
BsmI	GAATGC	1 cut(s)	1070
Bso31I	GGTCTC	1 cut(s)	499
Bsp1286I	GDGCHC	1 cut(s)	156
Bsp1407I	TGTACA	1 cut(s)	239
Bsp143I	GATC	1 cut(s)	277
BspCNI	CTCAG	2 cut(s)	16, 931
BspDI	ATCGAT	1 cut(s)	276
BspMAI	CTGCAG	1 cut(s)	636
BspTNI	GGTCTC	1 cut(s)	499
BsrGI	TGTACA	1 cut(s)	239
BsrI	ACTGG	4 cut(s)	260, 406, 589, 830
BssECI	CCNNGG	3 cut(s)	479, 576, 999
BssMI	GATC	1 cut(s)	277
BssT1I	CCWWGG	1 cut(s)	479
Bst2UI	CCWGG	1 cut(s)	578
Bst4CI	ACNGT	1 cut(s)	248
BstAUI	TGTACA	1 cut(s)	239
BstBAI	YACGTR	1 cut(s)	1060
BstC8I	GCNNGC	1 cut(s)	906
BstDEI	CTNAG	4 cut(s)	24, 605, 769, 918
BstF5I	GGATG	3 cut(s)	429, 798, 904
BstHHI	GCGC	1 cut(s)	303
BstKTI	GATC	1 cut(s)	280
BstMAI	GTCTC	2 cut(s)	499, 1059
BstMBI	GATC	1 cut(s)	277
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 374, 740
BstNI	CCWGG	1 cut(s)	578
BstNSI	RCATGY	2 cut(s)	289, 505
BstSCI	CCNGG	2 cut(s)	540, 576
BstSFI	CTRYAG	1 cut(s)	632
BstV1I	GCAGC	1 cut(s)	909
BstV2I	GAAGAC	1 cut(s)	951
BstXI	CCANNNNNNTGG	1 cut(s)	584
Bsu15I	ATCGAT	1 cut(s)	276
BsuTUI	ATCGAT	1 cut(s)	276
BtrI	CACGTC	1 cut(s)	490
BtsCI	GGATG	3 cut(s)	429, 798, 904
BtsIMutI	CAGTG	3 cut(s)	399, 468, 520
Cac8I	GCNNGC	1 cut(s)	906
CaiI	CAGNNNCTG	1 cut(s)	715
CfoI	GCGC	1 cut(s)	303
ClaI	ATCGAT	1 cut(s)	276
Csp6I	GTAC	4 cut(s)	64, 240, 538, 567
CspCI	CAANNNNNGTGG	2 cut(s)	445, 480
CviAII	CATG	6 cut(s)	201, 286, 502, 687, 1085, 1092
CviQI	GTAC	4 cut(s)	64, 240, 538, 567
DdeI	CTNAG	4 cut(s)	24, 605, 769, 918
DpnI	GATC	1 cut(s)	279
DpnII	GATC	1 cut(s)	277
DraI	TTTAAA	2 cut(s)	654, 819
Ecl136II	GAGCTC	1 cut(s)	154
Eco130I	CCWWGG	1 cut(s)	479
Eco24I	GRGCYC	1 cut(s)	156
Eco31I	GGTCTC	1 cut(s)	499
Eco32I	GATATC	2 cut(s)	34, 967
Eco53kI	GAGCTC	1 cut(s)	154
Eco57I	CTGAAG	1 cut(s)	807
Eco72I	CACGTG	1 cut(s)	1060
EcoICRI	GAGCTC	1 cut(s)	154
EcoRII	CCWGG	1 cut(s)	576
EcoRV	GATATC	2 cut(s)	34, 967
EcoT14I	CCWWGG	1 cut(s)	479
EcoT22I	ATGCAT	2 cut(s)	206, 1093
EcoT38I	GRGCYC	1 cut(s)	156
ErhI	CCWWGG	1 cut(s)	479
FaeI	CATG	6 cut(s)	204, 289, 505, 690, 1088, 1095
FaqI	GGGAC	1 cut(s)	182
FatI	CATG	6 cut(s)	200, 285, 501, 686, 1084, 1091
Fnu4HI	GCNGC	1 cut(s)	923
FokI	GGATG	3 cut(s)	416, 785, 911
FriOI	GRGCYC	1 cut(s)	156
Fsp4HI	GCNGC	1 cut(s)	923
FspBI	CTAG	3 cut(s)	14, 57, 842
GlaI	GCGC	1 cut(s)	302
GluI	GCNGC	1 cut(s)	923
HapII	CCGG	1 cut(s)	541
HhaI	GCGC	1 cut(s)	303
Hin1II	CATG	6 cut(s)	204, 289, 505, 690, 1088, 1095
Hin6I	GCGC	1 cut(s)	301
HinP1I	GCGC	1 cut(s)	301
HpaII	CCGG	1 cut(s)	541
HphI	GGTGA	1 cut(s)	655
Hpy166II	GTNNAC	2 cut(s)	569, 1015
Hpy188I	TCNGA	5 cut(s)	25, 803, 866, 964, 1003
Hpy188III	TCNNGA	5 cut(s)	157, 281, 716, 760, 941
Hpy8I	GTNNAC	2 cut(s)	569, 1015
Hpy99I	CGWCG	2 cut(s)	491, 1075
HpyAV	CCTTC	3 cut(s)	379, 634, 638
HpyCH4III	ACNGT	1 cut(s)	248
HpyCH4IV	ACGT	5 cut(s)	46, 306, 489, 558, 1059
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 374, 740
HpyF3I	CTNAG	4 cut(s)	24, 605, 769, 918
HpySE526I	ACGT	5 cut(s)	46, 306, 489, 558, 1059
Hsp92II	CATG	6 cut(s)	204, 289, 505, 690, 1088, 1095
HspAI	GCGC	1 cut(s)	301
Kzo9I	GATC	1 cut(s)	277
LmnI	GCTCC	3 cut(s)	159, 319, 688
Lsp1109I	GCAGC	1 cut(s)	909
LweI	GCATC	3 cut(s)	917, 923, 1078
MaeI	CTAG	3 cut(s)	14, 57, 842
MaeII	ACGT	5 cut(s)	46, 306, 489, 558, 1059
MaeIII	GTNAC	3 cut(s)	404, 580, 793
MalI	GATC	1 cut(s)	279
MboI	GATC	1 cut(s)	277
MboII	GAAGA	3 cut(s)	649, 951, 1031
MfeI	CAATTG	1 cut(s)	850
MhlI	GDGCHC	1 cut(s)	156
MluCI	AATT	6 cut(s)	5, 129, 178, 700, 774, 850
MmeI	TCCRAC	3 cut(s)	119, 480, 499
MnlI	CCTC	3 cut(s)	132, 980, 1009
Mph1103I	ATGCAT	2 cut(s)	206, 1093
MseI	TTAA	5 cut(s)	555, 617, 653, 818, 894
MslI	CAYNNNNRTG	1 cut(s)	434
MspA1I	CMGCKG	1 cut(s)	922
MspI	CCGG	1 cut(s)	541
MspR9I	CCNGG	2 cut(s)	542, 578
MunI	CAATTG	1 cut(s)	850
Mva1269I	GAATGC	1 cut(s)	1070
MvaI	CCWGG	1 cut(s)	578
MwoI	GCNNNNNNNGC	3 cut(s)	10, 374, 740
NciI	CCSGG	1 cut(s)	542
NdeII	GATC	1 cut(s)	277
NlaIII	CATG	6 cut(s)	204, 289, 505, 690, 1088, 1095
NsiI	ATGCAT	2 cut(s)	206, 1093
NspI	RCATGY	2 cut(s)	289, 505
PciI	ACATGT	2 cut(s)	285, 501
PctI	GAATGC	1 cut(s)	1070
PflFI	GACNNNGTC	1 cut(s)	491
PkrI	GCNGC	1 cut(s)	924
PmaCI	CACGTG	1 cut(s)	1060
PmlI	CACGTG	1 cut(s)	1060
Ppu21I	YACGTR	1 cut(s)	1060
PscI	ACATGT	2 cut(s)	285, 501
Psp124BI	GAGCTC	1 cut(s)	156
Psp1406I	AACGTT	1 cut(s)	46
Psp6I	CCWGG	1 cut(s)	576
PspCI	CACGTG	1 cut(s)	1060
PspGI	CCWGG	1 cut(s)	576
PstI	CTGCAG	1 cut(s)	636
PstNI	CAGNNNCTG	1 cut(s)	715
PsyI	GACNNNGTC	1 cut(s)	491
PvuII	CAGCTG	1 cut(s)	922
RsaI	GTAC	4 cut(s)	65, 241, 539, 568
RsaNI	GTAC	4 cut(s)	64, 240, 538, 567
RseI	CAYNNNNRTG	1 cut(s)	434
SacI	GAGCTC	1 cut(s)	156
SaqAI	TTAA	5 cut(s)	555, 617, 653, 818, 894
SatI	GCNGC	1 cut(s)	923
Sau3AI	GATC	1 cut(s)	277
ScrFI	CCNGG	2 cut(s)	542, 578
SduI	GDGCHC	1 cut(s)	156
SfaNI	GCATC	3 cut(s)	917, 923, 1078
SfcI	CTRYAG	1 cut(s)	632
SmiMI	CAYNNNNRTG	1 cut(s)	434
Sse9I	AATT	6 cut(s)	5, 129, 178, 700, 774, 850
SspMI	CTAG	3 cut(s)	14, 57, 842
SstI	GAGCTC	1 cut(s)	156
StyD4I	CCNGG	2 cut(s)	540, 576
StyI	CCWWGG	1 cut(s)	479
TaaI	ACNGT	1 cut(s)	248
TaiI	ACGT	5 cut(s)	49, 309, 492, 561, 1062
TaqI	TCGA	3 cut(s)	276, 761, 1073
TasI	AATT	6 cut(s)	5, 129, 178, 700, 774, 850
TatI	WGTACW	1 cut(s)	239
Tru1I	TTAA	5 cut(s)	555, 617, 653, 818, 894
Tru9I	TTAA	5 cut(s)	555, 617, 653, 818, 894
TscAI	CASTG	3 cut(s)	406, 475, 520
TseI	GCWGC	1 cut(s)	922
TspDTI	ATGAA	2 cut(s)	418, 1022
TspRI	CASTG	3 cut(s)	406, 475, 520
Tth111I	GACNNNGTC	1 cut(s)	491
XapI	RAATTY	1 cut(s)	700
XceI	RCATGY	2 cut(s)	289, 505
XspI	CTAG	3 cut(s)	14, 57, 842
Zsp2I	ATGCAT	2 cut(s)	206, 1093

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.