AT1G48280

Protein CHUP1, chloroplastic-like

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
17835032 .. 17837781
2750 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G48280.1

Sequence Viewer

Length: 1677 bp
ATGTCCCGCATTTCCACCACCTCCACTACTCCTTCACGCGTGAGAGCTGCGAATTCGCACTACTCAGTGATCTCTAAACCTAGAGCACAAGACGATAACGGTCTCACCGGAGGTAAACCGAAATCGTCAGGTTACGATGTGAAAAATGATCCAGCGAAACGGCGATCAATTCTGCTGAAAAGAGCGAAATCTGCAGAGGAGGAGATGGCGGTTTTGGCTCCTCAGAGAGCTCGGTCTGTGAATCGTCCGGCGGTTGTAGAGCAATTCGGTTGTCCGAGGCGGCCGATTTCTCGAAAAAGCGAAGAGACGGTAATGGCTACAGCGGCGGCGGAGGATGAGAAGAGGAAGAGAATGGAGGAATTGGAGGAGAAGCTGGTAGTGAATGAGTCGTTGATTAAGGATTTGCAGTTGCAGGTTTTGAATTTGAAAACGGAGTTAGAGGAAGCTCGTAATTCAAATGTAGAGCTTGAGTTGAATAATAGGAAGCTTTCTCAGGATCTTGTTTCAGCTGAAGCTAAGATCTCATCTCTTTCTTCTAACGACAAGCCAGCTAAAGAACATCAAAACAGCAGATTCAAAGATATCCAGAGGTTAATAGCTAGCAAATTAGAGCAACCCAAGGTTAAGAAGGAGGTAGCAGTAGAGTCATCAAGATTATCTCCACCATCACCTTCTCCTTCAAGATTACCGCCAACACCGCCATTACCGAAGTTTTTGGTGTCTCCAGCTAGCAGTTTAGGTAAAAGAGATGAAAATTCTTCACCCTTTGCACCTCCAACACCACCGCCTCCGCCGCCACCACCACCACCTAGACCTCTTGCTAAAGCAGCTCGTGCTCAGAAGTCTCCTCCAGTTTCACAGCTATTTCAGTTGTTGAATAAGCAAGATAATAGTAGAAACCTTTCTCAGTCTGTTAATGGGAATAAGTCTCAAGTTAACAGTGCTCACAACAGTATAGTCGGAGAAATTCAAAACCGTTCTGCGCATCTCATCGCTATAAAAGCTGATATAGAGACAAAAGGGGAGTTTATCAATGATCTTATCCAGAAAGTTCTGACCACTTGTTTTTCGGATATGGAAGATGTCATGAAATTTGTGGATTGGCTTGATAAAGAACTGGCAACTCTGGCTGATGAGCGTGCTGTGCTTAAGCATTTCAAGTGGCCTGAGAAGAAAGCCGATACCCTGCAAGAGGCTGCAGTTGAATACCGTGAGCTAAAGAAACTGGAAAAAGAACTTTCTTCCTACTCTGATGATCCGAACATTCACTACGGTGTTGCCCTGAAGAAAATGGCCAACTTACTAGACAAGTCGGAGCAGAGGATAAGGAGGCTAGTCAGATTACGTGGCTCATCCATGCGTTCTTACCAGGACTTTAAGATCCCAGTCGAGTGGATGCTTGACTCGGGAATGATATGCAAGATCAAAAGAGCATCGATCAAACTTGCGAAAACCTACATGAATAGAGTAGCGAATGAGCTGCAATCAGCTCGTAACTTGGATAGAGAGTCTACTAAAGAAGCATTGCTTCTTCAAGGCGTCCGATTTGCTTACAGAACGCACCAGTTTGCGGGAGGGCTCGATCCAGAGACATTGTGTGCATTAGAAGAGATTAAGCAACGTGTTCCGAGTCATCTCCGGCTGGCACGGGGGAATATGGCCGGAAATCTGTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

558

Amino Acids

62.47

Weight (kDa)

9.67

Isoelectric Point (pI)

59.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 984
Acc36I ACCTGC 1 cut(s) 403
AccI GTMKAC 1 cut(s) 1511
AccII CGCG 1 cut(s) 39
AclWI GGATC 5 cut(s) 143, 504, 1250, 1375, 1577
AcoI YGGCCR 3 cut(s) 281, 1293, 1659
AcsI RAATTY 5 cut(s) 52, 421, 754, 966, 1091
AcuI CTGAAG 2 cut(s) 531, 1304
AcyI GRCGYC 1 cut(s) 1539
AfiI CCNNNNNNNGG 2 cut(s) 1192, 1570
AflII CTTAAG 1 cut(s) 1148
AflIII ACRYGT 2 cut(s) 37, 1621
AjnI CCWGG 1 cut(s) 1368
AleI CACNNNNGTG 1 cut(s) 1272
Alw21I GWGCWC 4 cut(s) 88, 232, 838, 946
Alw26I GTCTC 7 cut(s) 107, 299, 726, 849, 933, 1007, 1583
AlwI GGATC 5 cut(s) 143, 504, 1250, 1375, 1577
Ama87I CYCGRG 1 cut(s) 1405
AoxI GGCC 4 cut(s) 281, 1163, 1293, 1659
ApeKI GCWGC 4 cut(s) 47, 827, 1196, 1480
ApoI RAATTY 5 cut(s) 52, 421, 754, 966, 1091
Asp700I GAANNNNTTC 1 cut(s) 901
AspLEI GCGC 1 cut(s) 985
AsuHPI GGTGA 3 cut(s) 97, 660, 753
AsuNHI GCTAGC 2 cut(s) 599, 728
AvaI CYCGRG 1 cut(s) 1405
BalI TGGCCA 1 cut(s) 1295
BanII GRGCYC 2 cut(s) 232, 1581
BauI CACGAG 1 cut(s) 831
Bbv12I GWGCWC 4 cut(s) 88, 232, 838, 946
BbvI GCAGC 4 cut(s) 34, 839, 1183, 1467
BccI CCATC 2 cut(s) 199, 673
BceAI ACGGC 1 cut(s) 176
BcgI CGANNNNNNTGC 4 cut(s) 1462, 1472, 1496, 1506
BciT130I CCWGG 1 cut(s) 1370
BcoDI GTCTC 7 cut(s) 107, 299, 726, 849, 933, 1007, 1583
BfaI CTAG 6 cut(s) 81, 600, 729, 810, 1304, 1334
BfmI CTRYAG 3 cut(s) 192, 318, 1197
BfrI CTTAAG 1 cut(s) 1148
BfuAI ACCTGC 1 cut(s) 403
BglII AGATCT 1 cut(s) 519
BisI GCNGC 8 cut(s) 48, 281, 324, 327, 794, 828, 1197, 1481
BlsI GCNGC 8 cut(s) 49, 282, 325, 328, 795, 829, 1198, 1482
Bme1390I CCNGG 1 cut(s) 1370
BmeT110I CYCGRG 1 cut(s) 1405
BmiI GGNNCC 1 cut(s) 219
BmrFI CCNGG 1 cut(s) 1370
BmrI ACTGGG 1 cut(s) 1379
BmsI GCATC 3 cut(s) 994, 1386, 1442
BmtI GCTAGC 2 cut(s) 603, 732
BmuI ACTGGG 1 cut(s) 1379
BpmI CTGGAG 2 cut(s) 708, 834
BpuEI CTTGAG 2 cut(s) 488, 915
Bsa29I ATCGAT 1 cut(s) 1436
BsaAI YACGTR 1 cut(s) 1346
BsaHI GRCGYC 1 cut(s) 1539
BsaI GGTCTC 1 cut(s) 107
BsaJI CCNNGG 2 cut(s) 275, 618
BsaWI WCCGGW 1 cut(s) 107
Bsc4I CCNNNNNNNGG 2 cut(s) 1192, 1570
Bse1I ACTGG 5 cut(s) 851, 1122, 1230, 1385, 1564
Bse3DI GCAATG 1 cut(s) 1523
BseBI CCWGG 1 cut(s) 1370
BseCI ATCGAT 1 cut(s) 1436
BseDI CCNNGG 2 cut(s) 275, 618
BseGI GGATG 3 cut(s) 340, 1352, 1401
BseLI CCNNNNNNNGG 2 cut(s) 1192, 1570
BseMI GCAATG 1 cut(s) 1523
BseMII CTCAG 6 cut(s) 78, 236, 506, 851, 920, 1158
BseNI ACTGG 5 cut(s) 851, 1122, 1230, 1385, 1564
BseRI GAGGAG 5 cut(s) 210, 212, 215, 380, 837
BseX3I CGGCCG 1 cut(s) 281
BseXI GCAGC 4 cut(s) 34, 839, 1183, 1467
Bsh1236I CGCG 1 cut(s) 39
Bsh1285I CGRYCG 1 cut(s) 284
BshFI GGCC 4 cut(s) 283, 1165, 1295, 1661
BshVI ATCGAT 1 cut(s) 1436
BsiEI CGRYCG 1 cut(s) 284
BsiHKAI GWGCWC 4 cut(s) 88, 232, 838, 946
BsiHKCI CYCGRG 1 cut(s) 1405
BsiSI CCGG 4 cut(s) 108, 248, 1639, 1662
BslI CCNNNNNNNGG 2 cut(s) 1192, 1570
BsmAI GTCTC 7 cut(s) 107, 299, 726, 849, 933, 1007, 1583
BsmBI CGTCTC 1 cut(s) 299
BsnI GGCC 4 cut(s) 283, 1165, 1295, 1661
Bso31I GGTCTC 1 cut(s) 107
BsoBI CYCGRG 1 cut(s) 1405
Bsp1286I GDGCHC 5 cut(s) 88, 232, 838, 946, 1581
BspANI GGCC 4 cut(s) 283, 1165, 1295, 1661
BspCNI CTCAG 6 cut(s) 77, 235, 505, 850, 919, 1159
BspDI ATCGAT 1 cut(s) 1436
BspFNI CGCG 1 cut(s) 39
BspHI TCATGA 1 cut(s) 1086
BspLI GGNNCC 1 cut(s) 219
BspMAI CTGCAG 2 cut(s) 196, 1201
BspMI ACCTGC 1 cut(s) 403
BspOI GCTAGC 2 cut(s) 603, 732
BspPI GGATC 5 cut(s) 143, 504, 1250, 1375, 1577
BspTI CTTAAG 1 cut(s) 1148
BspTNI GGTCTC 1 cut(s) 107
BsrDI GCAATG 1 cut(s) 1523
BsrI ACTGG 5 cut(s) 851, 1122, 1230, 1385, 1564
BssECI CCNNGG 2 cut(s) 275, 618
BssNI GRCGYC 1 cut(s) 1539
BssSI CACGAG 1 cut(s) 831
BssT1I CCWWGG 1 cut(s) 618
Bst2BI CACGAG 1 cut(s) 831
Bst2UI CCWGG 1 cut(s) 1370
Bst4CI ACNGT 7 cut(s) 101, 310, 941, 953, 977, 1211, 1274
Bst6I CTCTTC 4 cut(s) 297, 335, 341, 1602
BstACI GRCGYC 1 cut(s) 1539
BstAFI CTTAAG 1 cut(s) 1148
BstAPI GCANNNNNTGC 1 cut(s) 833
BstBAI YACGTR 1 cut(s) 1346
BstC8I GCNNGC 5 cut(s) 549, 601, 730, 1140, 1644
BstDEI CTNAG 7 cut(s) 64, 222, 492, 516, 837, 906, 1167
BstENI CCTNNNNNAGG 1 cut(s) 1190
BstF5I GGATG 3 cut(s) 340, 1352, 1401
BstFNI CGCG 1 cut(s) 39
BstHHI GCGC 1 cut(s) 985
BstMAI GTCTC 7 cut(s) 107, 299, 726, 849, 933, 1007, 1583
BstMCI CGRYCG 1 cut(s) 284
BstNI CCWGG 1 cut(s) 1370
BstSCI CCNGG 1 cut(s) 1368
BstSFI CTRYAG 3 cut(s) 192, 318, 1197
BstUI CGCG 1 cut(s) 39
BstV1I GCAGC 4 cut(s) 34, 839, 1183, 1467
BstX2I RGATCY 3 cut(s) 496, 519, 1380
BstXI CCANNNNNNTGG 1 cut(s) 1392
BstYI RGATCY 3 cut(s) 496, 519, 1380
BstZI CGGCCG 1 cut(s) 281
Bsu15I ATCGAT 1 cut(s) 1436
BsuRI GGCC 4 cut(s) 283, 1165, 1295, 1661
BsuTUI ATCGAT 1 cut(s) 1436
BtgZI GCGATG 1 cut(s) 976
BtsCI GGATG 3 cut(s) 340, 1352, 1401
BtsIMutI CAGTG 2 cut(s) 72, 946
BveI ACCTGC 1 cut(s) 403
Cac8I GCNNGC 5 cut(s) 549, 601, 730, 1140, 1644
CciI TCATGA 1 cut(s) 1086
CfoI GCGC 1 cut(s) 985
ClaI ATCGAT 1 cut(s) 1436
CseI GACGC 1 cut(s) 1528
CviAII CATG 3 cut(s) 1087, 1357, 1459
DdeI CTNAG 7 cut(s) 64, 222, 492, 516, 837, 906, 1167
EaeI YGGCCR 3 cut(s) 281, 1293, 1659
EagI CGGCCG 1 cut(s) 281
Eam1104I CTCTTC 4 cut(s) 297, 335, 341, 1602
EarI CTCTTC 4 cut(s) 297, 335, 341, 1602
EciI GGCGGA 2 cut(s) 344, 780
Ecl136II GAGCTC 1 cut(s) 230
EclXI CGGCCG 1 cut(s) 281
Eco130I CCWWGG 1 cut(s) 618
Eco24I GRGCYC 2 cut(s) 232, 1581
Eco31I GGTCTC 1 cut(s) 107
Eco32I GATATC 1 cut(s) 583
Eco52I CGGCCG 1 cut(s) 281
Eco53kI GAGCTC 1 cut(s) 230
Eco57I CTGAAG 2 cut(s) 531, 1304
Eco88I CYCGRG 1 cut(s) 1405
EcoICRI GAGCTC 1 cut(s) 230
EcoNI CCTNNNNNAGG 1 cut(s) 1190
EcoRI GAATTC 1 cut(s) 52
EcoRII CCWGG 1 cut(s) 1368
EcoRV GATATC 1 cut(s) 583
EcoT14I CCWWGG 1 cut(s) 618
EcoT38I GRGCYC 2 cut(s) 232, 1581
ErhI CCWWGG 1 cut(s) 618
Esp3I CGTCTC 1 cut(s) 299
FaeI CATG 3 cut(s) 1090, 1360, 1462
FaiI YATR 9 cut(s) 956, 998, 1010, 1076, 1088, 1358, 1417, 1460, 1658
FalI AAGNNNNNCTT 2 cut(s) 1512, 1544
FatI CATG 3 cut(s) 1086, 1356, 1458
FauI CCCGC 2 cut(s) 14, 1564
FblI GTMKAC 1 cut(s) 1511
Fnu4HI GCNGC 8 cut(s) 48, 281, 324, 327, 794, 828, 1197, 1481
FokI GGATG 3 cut(s) 347, 1339, 1408
FriOI GRGCYC 2 cut(s) 232, 1581
Fsp4HI GCNGC 8 cut(s) 48, 281, 324, 327, 794, 828, 1197, 1481
FspBI CTAG 6 cut(s) 81, 600, 729, 810, 1304, 1334
FspI TGCGCA 1 cut(s) 984
GlaI GCGC 1 cut(s) 984
GluI GCNGC 8 cut(s) 48, 281, 324, 327, 794, 828, 1197, 1481
GsuI CTGGAG 2 cut(s) 708, 834
HaeIII GGCC 4 cut(s) 283, 1165, 1295, 1661
HapII CCGG 4 cut(s) 108, 248, 1639, 1662
HgaI GACGC 1 cut(s) 1528
HhaI GCGC 1 cut(s) 985
Hin1I GRCGYC 1 cut(s) 1539
Hin1II CATG 3 cut(s) 1090, 1360, 1462
Hin6I GCGC 1 cut(s) 983
HinP1I GCGC 1 cut(s) 983
HincII GTYRAC 1 cut(s) 937
HindII GTYRAC 1 cut(s) 937
HindIII AAGCTT 1 cut(s) 485
HinfI GANTC 7 cut(s) 241, 386, 573, 644, 1403, 1508, 1630
HpaI GTTAAC 1 cut(s) 937
HpaII CCGG 4 cut(s) 108, 248, 1639, 1662
HphI GGTGA 3 cut(s) 97, 660, 753
Hpy166II GTNNAC 3 cut(s) 116, 937, 1512
Hpy188III TCNNGA 9 cut(s) 291, 494, 586, 651, 681, 1045, 1087, 1407, 1586
Hpy8I GTNNAC 3 cut(s) 116, 937, 1512
HpyAV CCTTC 4 cut(s) 42, 622, 681, 687
HpyCH4III ACNGT 7 cut(s) 101, 310, 941, 953, 977, 1211, 1274
HpyCH4IV ACGT 2 cut(s) 1345, 1621
HpyCH4V TGCA 9 cut(s) 194, 406, 412, 770, 1189, 1199, 1419, 1483, 1601
HpyF3I CTNAG 7 cut(s) 64, 222, 492, 516, 837, 906, 1167
HpySE526I ACGT 2 cut(s) 1345, 1621
Hsp92I GRCGYC 1 cut(s) 1539
Hsp92II CATG 3 cut(s) 1090, 1360, 1462
HspAI GCGC 1 cut(s) 983
KspAI GTTAAC 1 cut(s) 937
LmnI GCTCC 2 cut(s) 223, 1315
Lsp1109I GCAGC 4 cut(s) 34, 839, 1183, 1467
LweI GCATC 3 cut(s) 994, 1386, 1442
MaeI CTAG 6 cut(s) 81, 600, 729, 810, 1304, 1334
MaeII ACGT 2 cut(s) 1345, 1621
MaeIII GTNAC 2 cut(s) 131, 1493
MflI RGATCY 3 cut(s) 496, 519, 1380
MhlI GDGCHC 5 cut(s) 88, 232, 838, 946, 1581
MlsI TGGCCA 1 cut(s) 1295
MluI ACGCGT 1 cut(s) 37
MluNI TGGCCA 1 cut(s) 1295
MlyI GAGTC 5 cut(s) 395, 653, 1397, 1517, 1639
MmeI TCCRAC 3 cut(s) 800, 940, 1293
Mox20I TGGCCA 1 cut(s) 1295
MroXI GAANNNNTTC 1 cut(s) 901
MscI TGGCCA 1 cut(s) 1295
MseI TTAA 8 cut(s) 396, 593, 624, 915, 936, 1149, 1377, 1614
MslI CAYNNNNRTG 1 cut(s) 1272
Msp20I TGGCCA 1 cut(s) 1295
MspA1I CMGCKG 2 cut(s) 323, 509
MspCI CTTAAG 1 cut(s) 1148
MspI CCGG 4 cut(s) 108, 248, 1639, 1662
MspR9I CCNGG 1 cut(s) 1370
MvaI CCWGG 1 cut(s) 1370
MvnI CGCG 1 cut(s) 39
NheI GCTAGC 2 cut(s) 599, 728
NlaIII CATG 3 cut(s) 1090, 1360, 1462
NlaIV GGNNCC 1 cut(s) 219
NsbI TGCGCA 1 cut(s) 984
OliI CACNNNNGTG 1 cut(s) 1272
PagI TCATGA 1 cut(s) 1086
PdmI GAANNNNTTC 1 cut(s) 901
PfeI GAWTC 2 cut(s) 241, 573
PkrI GCNGC 8 cut(s) 49, 282, 325, 328, 795, 829, 1198, 1482
PleI GAGTC 5 cut(s) 394, 652, 1397, 1516, 1638
PpsI GAGTC 5 cut(s) 394, 652, 1397, 1516, 1638
Ppu21I YACGTR 1 cut(s) 1346
Psp124BI GAGCTC 1 cut(s) 232
Psp6I CCWGG 1 cut(s) 1368
PspGI CCWGG 1 cut(s) 1368
PspN4I GGNNCC 1 cut(s) 219
PsrI GAACNNNNNNTAC 2 cut(s) 1253, 1285
PstI CTGCAG 2 cut(s) 196, 1201
PsuI RGATCY 3 cut(s) 496, 519, 1380
PvuII CAGCTG 1 cut(s) 509
RseI CAYNNNNRTG 1 cut(s) 1272
SacI GAGCTC 1 cut(s) 232
SaqAI TTAA 8 cut(s) 396, 593, 624, 915, 936, 1149, 1377, 1614
SatI GCNGC 8 cut(s) 48, 281, 324, 327, 794, 828, 1197, 1481
SchI GAGTC 5 cut(s) 395, 653, 1397, 1517, 1639
ScrFI CCNGG 1 cut(s) 1370
SduI GDGCHC 5 cut(s) 88, 232, 838, 946, 1581
SfaNI GCATC 3 cut(s) 994, 1386, 1442
SfcI CTRYAG 3 cut(s) 192, 318, 1197
SmiMI CAYNNNNRTG 1 cut(s) 1272
SmlI CTYRAG 3 cut(s) 467, 930, 1148
SmoI CTYRAG 3 cut(s) 467, 930, 1148
SspMI CTAG 6 cut(s) 81, 600, 729, 810, 1304, 1334
SstI GAGCTC 1 cut(s) 232
StyD4I CCNGG 1 cut(s) 1368
StyI CCWWGG 1 cut(s) 618
TaaI ACNGT 7 cut(s) 101, 310, 941, 953, 977, 1211, 1274
TaiI ACGT 2 cut(s) 1348, 1624
TaqI TCGA 4 cut(s) 292, 1389, 1436, 1581
TaqII GACCGA 1 cut(s) 222
TauI GCSGC 4 cut(s) 283, 326, 329, 796
TfiI GAWTC 2 cut(s) 241, 573
Tru1I TTAA 8 cut(s) 396, 593, 624, 915, 936, 1149, 1377, 1614
Tru9I TTAA 8 cut(s) 396, 593, 624, 915, 936, 1149, 1377, 1614
TscAI CASTG 2 cut(s) 72, 946
TseI GCWGC 4 cut(s) 47, 827, 1196, 1480
TspDTI ATGAA 3 cut(s) 765, 1103, 1475
TspGWI ACGGA 1 cut(s) 446
TspRI CASTG 2 cut(s) 72, 946
Vha464I CTTAAG 1 cut(s) 1148
XagI CCTNNNNNAGG 1 cut(s) 1190
XapI RAATTY 5 cut(s) 52, 421, 754, 966, 1091
XmiI GTMKAC 1 cut(s) 1511
XmnI GAANNNNTTC 1 cut(s) 901
XspI CTAG 6 cut(s) 81, 600, 729, 810, 1304, 1334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.