Protein CHUP1, chloroplastic-like
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G48280 |
| fragaria_vesca | FvH4_4g21640 FvH4_4g21640 FvH4_4g21640 FvH4_4g21640 FvH4_4g21640 FvH4_4g21640 FvH4_4g21640 |
| malus_domestica | MD13G1138500.v1.1 MD16G1134400.v1.1 |
| prunus_persica | Prupe.1G103700_v2.0.a1 Prupe.1G103700_v2.0.a1 Prupe.1G103700_v2.0.a1 Prupe.1G103700_v2.0.a1 Prupe.1G103700_v2.0.a1 Prupe.1G103700_v2.0.a1 Prupe.1G103700_v2.0.a1 |
| pyrus_communis | pycom13g12060 pycom16g11870 |
| rosa_chinensis | RchiOBHm_Chr4g0427871 |
| rosa_laevigata | RLG00000007205 |
| rosa_roxburghii | Rroxscaffold_5G00369520 |
| rosa_rugosa | Rorug04G0220200 Rorug04G0220200 |
| rosa_samantha | Rh4AG277100 Rh4BG282800 Rh4CG298500 Rh4DG279900 |
| rosa_wichuraiana | Rw4G024070 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 984 |
| Acc36I | ACCTGC | 1 cut(s) | 403 |
| AccI | GTMKAC | 1 cut(s) | 1511 |
| AccII | CGCG | 1 cut(s) | 39 |
| AclWI | GGATC | 5 cut(s) | 143, 504, 1250, 1375, 1577 |
| AcoI | YGGCCR | 3 cut(s) | 281, 1293, 1659 |
| AcsI | RAATTY | 5 cut(s) | 52, 421, 754, 966, 1091 |
| AcuI | CTGAAG | 2 cut(s) | 531, 1304 |
| AcyI | GRCGYC | 1 cut(s) | 1539 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1192, 1570 |
| AflII | CTTAAG | 1 cut(s) | 1148 |
| AflIII | ACRYGT | 2 cut(s) | 37, 1621 |
| AjnI | CCWGG | 1 cut(s) | 1368 |
| AleI | CACNNNNGTG | 1 cut(s) | 1272 |
| Alw21I | GWGCWC | 4 cut(s) | 88, 232, 838, 946 |
| Alw26I | GTCTC | 7 cut(s) | 107, 299, 726, 849, 933, 1007, 1583 |
| AlwI | GGATC | 5 cut(s) | 143, 504, 1250, 1375, 1577 |
| Ama87I | CYCGRG | 1 cut(s) | 1405 |
| AoxI | GGCC | 4 cut(s) | 281, 1163, 1293, 1659 |
| ApeKI | GCWGC | 4 cut(s) | 47, 827, 1196, 1480 |
| ApoI | RAATTY | 5 cut(s) | 52, 421, 754, 966, 1091 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 901 |
| AspLEI | GCGC | 1 cut(s) | 985 |
| AsuHPI | GGTGA | 3 cut(s) | 97, 660, 753 |
| AsuNHI | GCTAGC | 2 cut(s) | 599, 728 |
| AvaI | CYCGRG | 1 cut(s) | 1405 |
| BalI | TGGCCA | 1 cut(s) | 1295 |
| BanII | GRGCYC | 2 cut(s) | 232, 1581 |
| BauI | CACGAG | 1 cut(s) | 831 |
| Bbv12I | GWGCWC | 4 cut(s) | 88, 232, 838, 946 |
| BbvI | GCAGC | 4 cut(s) | 34, 839, 1183, 1467 |
| BccI | CCATC | 2 cut(s) | 199, 673 |
| BceAI | ACGGC | 1 cut(s) | 176 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1462, 1472, 1496, 1506 |
| BciT130I | CCWGG | 1 cut(s) | 1370 |
| BcoDI | GTCTC | 7 cut(s) | 107, 299, 726, 849, 933, 1007, 1583 |
| BfaI | CTAG | 6 cut(s) | 81, 600, 729, 810, 1304, 1334 |
| BfmI | CTRYAG | 3 cut(s) | 192, 318, 1197 |
| BfrI | CTTAAG | 1 cut(s) | 1148 |
| BfuAI | ACCTGC | 1 cut(s) | 403 |
| BglII | AGATCT | 1 cut(s) | 519 |
| BisI | GCNGC | 8 cut(s) | 48, 281, 324, 327, 794, 828, 1197, 1481 |
| BlsI | GCNGC | 8 cut(s) | 49, 282, 325, 328, 795, 829, 1198, 1482 |
| Bme1390I | CCNGG | 1 cut(s) | 1370 |
| BmeT110I | CYCGRG | 1 cut(s) | 1405 |
| BmiI | GGNNCC | 1 cut(s) | 219 |
| BmrFI | CCNGG | 1 cut(s) | 1370 |
| BmrI | ACTGGG | 1 cut(s) | 1379 |
| BmsI | GCATC | 3 cut(s) | 994, 1386, 1442 |
| BmtI | GCTAGC | 2 cut(s) | 603, 732 |
| BmuI | ACTGGG | 1 cut(s) | 1379 |
| BpmI | CTGGAG | 2 cut(s) | 708, 834 |
| BpuEI | CTTGAG | 2 cut(s) | 488, 915 |
| Bsa29I | ATCGAT | 1 cut(s) | 1436 |
| BsaAI | YACGTR | 1 cut(s) | 1346 |
| BsaHI | GRCGYC | 1 cut(s) | 1539 |
| BsaI | GGTCTC | 1 cut(s) | 107 |
| BsaJI | CCNNGG | 2 cut(s) | 275, 618 |
| BsaWI | WCCGGW | 1 cut(s) | 107 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1192, 1570 |
| Bse1I | ACTGG | 5 cut(s) | 851, 1122, 1230, 1385, 1564 |
| Bse3DI | GCAATG | 1 cut(s) | 1523 |
| BseBI | CCWGG | 1 cut(s) | 1370 |
| BseCI | ATCGAT | 1 cut(s) | 1436 |
| BseDI | CCNNGG | 2 cut(s) | 275, 618 |
| BseGI | GGATG | 3 cut(s) | 340, 1352, 1401 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1192, 1570 |
| BseMI | GCAATG | 1 cut(s) | 1523 |
| BseMII | CTCAG | 6 cut(s) | 78, 236, 506, 851, 920, 1158 |
| BseNI | ACTGG | 5 cut(s) | 851, 1122, 1230, 1385, 1564 |
| BseRI | GAGGAG | 5 cut(s) | 210, 212, 215, 380, 837 |
| BseX3I | CGGCCG | 1 cut(s) | 281 |
| BseXI | GCAGC | 4 cut(s) | 34, 839, 1183, 1467 |
| Bsh1236I | CGCG | 1 cut(s) | 39 |
| Bsh1285I | CGRYCG | 1 cut(s) | 284 |
| BshFI | GGCC | 4 cut(s) | 283, 1165, 1295, 1661 |
| BshVI | ATCGAT | 1 cut(s) | 1436 |
| BsiEI | CGRYCG | 1 cut(s) | 284 |
| BsiHKAI | GWGCWC | 4 cut(s) | 88, 232, 838, 946 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1405 |
| BsiSI | CCGG | 4 cut(s) | 108, 248, 1639, 1662 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1192, 1570 |
| BsmAI | GTCTC | 7 cut(s) | 107, 299, 726, 849, 933, 1007, 1583 |
| BsmBI | CGTCTC | 1 cut(s) | 299 |
| BsnI | GGCC | 4 cut(s) | 283, 1165, 1295, 1661 |
| Bso31I | GGTCTC | 1 cut(s) | 107 |
| BsoBI | CYCGRG | 1 cut(s) | 1405 |
| Bsp1286I | GDGCHC | 5 cut(s) | 88, 232, 838, 946, 1581 |
| BspANI | GGCC | 4 cut(s) | 283, 1165, 1295, 1661 |
| BspCNI | CTCAG | 6 cut(s) | 77, 235, 505, 850, 919, 1159 |
| BspDI | ATCGAT | 1 cut(s) | 1436 |
| BspFNI | CGCG | 1 cut(s) | 39 |
| BspHI | TCATGA | 1 cut(s) | 1086 |
| BspLI | GGNNCC | 1 cut(s) | 219 |
| BspMAI | CTGCAG | 2 cut(s) | 196, 1201 |
| BspMI | ACCTGC | 1 cut(s) | 403 |
| BspOI | GCTAGC | 2 cut(s) | 603, 732 |
| BspPI | GGATC | 5 cut(s) | 143, 504, 1250, 1375, 1577 |
| BspTI | CTTAAG | 1 cut(s) | 1148 |
| BspTNI | GGTCTC | 1 cut(s) | 107 |
| BsrDI | GCAATG | 1 cut(s) | 1523 |
| BsrI | ACTGG | 5 cut(s) | 851, 1122, 1230, 1385, 1564 |
| BssECI | CCNNGG | 2 cut(s) | 275, 618 |
| BssNI | GRCGYC | 1 cut(s) | 1539 |
| BssSI | CACGAG | 1 cut(s) | 831 |
| BssT1I | CCWWGG | 1 cut(s) | 618 |
| Bst2BI | CACGAG | 1 cut(s) | 831 |
| Bst2UI | CCWGG | 1 cut(s) | 1370 |
| Bst4CI | ACNGT | 7 cut(s) | 101, 310, 941, 953, 977, 1211, 1274 |
| Bst6I | CTCTTC | 4 cut(s) | 297, 335, 341, 1602 |
| BstACI | GRCGYC | 1 cut(s) | 1539 |
| BstAFI | CTTAAG | 1 cut(s) | 1148 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 833 |
| BstBAI | YACGTR | 1 cut(s) | 1346 |
| BstC8I | GCNNGC | 5 cut(s) | 549, 601, 730, 1140, 1644 |
| BstDEI | CTNAG | 7 cut(s) | 64, 222, 492, 516, 837, 906, 1167 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1190 |
| BstF5I | GGATG | 3 cut(s) | 340, 1352, 1401 |
| BstFNI | CGCG | 1 cut(s) | 39 |
| BstHHI | GCGC | 1 cut(s) | 985 |
| BstMAI | GTCTC | 7 cut(s) | 107, 299, 726, 849, 933, 1007, 1583 |
| BstMCI | CGRYCG | 1 cut(s) | 284 |
| BstNI | CCWGG | 1 cut(s) | 1370 |
| BstSCI | CCNGG | 1 cut(s) | 1368 |
| BstSFI | CTRYAG | 3 cut(s) | 192, 318, 1197 |
| BstUI | CGCG | 1 cut(s) | 39 |
| BstV1I | GCAGC | 4 cut(s) | 34, 839, 1183, 1467 |
| BstX2I | RGATCY | 3 cut(s) | 496, 519, 1380 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1392 |
| BstYI | RGATCY | 3 cut(s) | 496, 519, 1380 |
| BstZI | CGGCCG | 1 cut(s) | 281 |
| Bsu15I | ATCGAT | 1 cut(s) | 1436 |
| BsuRI | GGCC | 4 cut(s) | 283, 1165, 1295, 1661 |
| BsuTUI | ATCGAT | 1 cut(s) | 1436 |
| BtgZI | GCGATG | 1 cut(s) | 976 |
| BtsCI | GGATG | 3 cut(s) | 340, 1352, 1401 |
| BtsIMutI | CAGTG | 2 cut(s) | 72, 946 |
| BveI | ACCTGC | 1 cut(s) | 403 |
| Cac8I | GCNNGC | 5 cut(s) | 549, 601, 730, 1140, 1644 |
| CciI | TCATGA | 1 cut(s) | 1086 |
| CfoI | GCGC | 1 cut(s) | 985 |
| ClaI | ATCGAT | 1 cut(s) | 1436 |
| CseI | GACGC | 1 cut(s) | 1528 |
| CviAII | CATG | 3 cut(s) | 1087, 1357, 1459 |
| DdeI | CTNAG | 7 cut(s) | 64, 222, 492, 516, 837, 906, 1167 |
| EaeI | YGGCCR | 3 cut(s) | 281, 1293, 1659 |
| EagI | CGGCCG | 1 cut(s) | 281 |
| Eam1104I | CTCTTC | 4 cut(s) | 297, 335, 341, 1602 |
| EarI | CTCTTC | 4 cut(s) | 297, 335, 341, 1602 |
| EciI | GGCGGA | 2 cut(s) | 344, 780 |
| Ecl136II | GAGCTC | 1 cut(s) | 230 |
| EclXI | CGGCCG | 1 cut(s) | 281 |
| Eco130I | CCWWGG | 1 cut(s) | 618 |
| Eco24I | GRGCYC | 2 cut(s) | 232, 1581 |
| Eco31I | GGTCTC | 1 cut(s) | 107 |
| Eco32I | GATATC | 1 cut(s) | 583 |
| Eco52I | CGGCCG | 1 cut(s) | 281 |
| Eco53kI | GAGCTC | 1 cut(s) | 230 |
| Eco57I | CTGAAG | 2 cut(s) | 531, 1304 |
| Eco88I | CYCGRG | 1 cut(s) | 1405 |
| EcoICRI | GAGCTC | 1 cut(s) | 230 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1190 |
| EcoRI | GAATTC | 1 cut(s) | 52 |
| EcoRII | CCWGG | 1 cut(s) | 1368 |
| EcoRV | GATATC | 1 cut(s) | 583 |
| EcoT14I | CCWWGG | 1 cut(s) | 618 |
| EcoT38I | GRGCYC | 2 cut(s) | 232, 1581 |
| ErhI | CCWWGG | 1 cut(s) | 618 |
| Esp3I | CGTCTC | 1 cut(s) | 299 |
| FaeI | CATG | 3 cut(s) | 1090, 1360, 1462 |
| FaiI | YATR | 9 cut(s) | 956, 998, 1010, 1076, 1088, 1358, 1417, 1460, 1658 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1512, 1544 |
| FatI | CATG | 3 cut(s) | 1086, 1356, 1458 |
| FauI | CCCGC | 2 cut(s) | 14, 1564 |
| FblI | GTMKAC | 1 cut(s) | 1511 |
| Fnu4HI | GCNGC | 8 cut(s) | 48, 281, 324, 327, 794, 828, 1197, 1481 |
| FokI | GGATG | 3 cut(s) | 347, 1339, 1408 |
| FriOI | GRGCYC | 2 cut(s) | 232, 1581 |
| Fsp4HI | GCNGC | 8 cut(s) | 48, 281, 324, 327, 794, 828, 1197, 1481 |
| FspBI | CTAG | 6 cut(s) | 81, 600, 729, 810, 1304, 1334 |
| FspI | TGCGCA | 1 cut(s) | 984 |
| GlaI | GCGC | 1 cut(s) | 984 |
| GluI | GCNGC | 8 cut(s) | 48, 281, 324, 327, 794, 828, 1197, 1481 |
| GsuI | CTGGAG | 2 cut(s) | 708, 834 |
| HaeIII | GGCC | 4 cut(s) | 283, 1165, 1295, 1661 |
| HapII | CCGG | 4 cut(s) | 108, 248, 1639, 1662 |
| HgaI | GACGC | 1 cut(s) | 1528 |
| HhaI | GCGC | 1 cut(s) | 985 |
| Hin1I | GRCGYC | 1 cut(s) | 1539 |
| Hin1II | CATG | 3 cut(s) | 1090, 1360, 1462 |
| Hin6I | GCGC | 1 cut(s) | 983 |
| HinP1I | GCGC | 1 cut(s) | 983 |
| HincII | GTYRAC | 1 cut(s) | 937 |
| HindII | GTYRAC | 1 cut(s) | 937 |
| HindIII | AAGCTT | 1 cut(s) | 485 |
| HinfI | GANTC | 7 cut(s) | 241, 386, 573, 644, 1403, 1508, 1630 |
| HpaI | GTTAAC | 1 cut(s) | 937 |
| HpaII | CCGG | 4 cut(s) | 108, 248, 1639, 1662 |
| HphI | GGTGA | 3 cut(s) | 97, 660, 753 |
| Hpy166II | GTNNAC | 3 cut(s) | 116, 937, 1512 |
| Hpy188III | TCNNGA | 9 cut(s) | 291, 494, 586, 651, 681, 1045, 1087, 1407, 1586 |
| Hpy8I | GTNNAC | 3 cut(s) | 116, 937, 1512 |
| HpyAV | CCTTC | 4 cut(s) | 42, 622, 681, 687 |
| HpyCH4III | ACNGT | 7 cut(s) | 101, 310, 941, 953, 977, 1211, 1274 |
| HpyCH4IV | ACGT | 2 cut(s) | 1345, 1621 |
| HpyCH4V | TGCA | 9 cut(s) | 194, 406, 412, 770, 1189, 1199, 1419, 1483, 1601 |
| HpyF3I | CTNAG | 7 cut(s) | 64, 222, 492, 516, 837, 906, 1167 |
| HpySE526I | ACGT | 2 cut(s) | 1345, 1621 |
| Hsp92I | GRCGYC | 1 cut(s) | 1539 |
| Hsp92II | CATG | 3 cut(s) | 1090, 1360, 1462 |
| HspAI | GCGC | 1 cut(s) | 983 |
| KspAI | GTTAAC | 1 cut(s) | 937 |
| LmnI | GCTCC | 2 cut(s) | 223, 1315 |
| Lsp1109I | GCAGC | 4 cut(s) | 34, 839, 1183, 1467 |
| LweI | GCATC | 3 cut(s) | 994, 1386, 1442 |
| MaeI | CTAG | 6 cut(s) | 81, 600, 729, 810, 1304, 1334 |
| MaeII | ACGT | 2 cut(s) | 1345, 1621 |
| MaeIII | GTNAC | 2 cut(s) | 131, 1493 |
| MflI | RGATCY | 3 cut(s) | 496, 519, 1380 |
| MhlI | GDGCHC | 5 cut(s) | 88, 232, 838, 946, 1581 |
| MlsI | TGGCCA | 1 cut(s) | 1295 |
| MluI | ACGCGT | 1 cut(s) | 37 |
| MluNI | TGGCCA | 1 cut(s) | 1295 |
| MlyI | GAGTC | 5 cut(s) | 395, 653, 1397, 1517, 1639 |
| MmeI | TCCRAC | 3 cut(s) | 800, 940, 1293 |
| Mox20I | TGGCCA | 1 cut(s) | 1295 |
| MroXI | GAANNNNTTC | 1 cut(s) | 901 |
| MscI | TGGCCA | 1 cut(s) | 1295 |
| MseI | TTAA | 8 cut(s) | 396, 593, 624, 915, 936, 1149, 1377, 1614 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1272 |
| Msp20I | TGGCCA | 1 cut(s) | 1295 |
| MspA1I | CMGCKG | 2 cut(s) | 323, 509 |
| MspCI | CTTAAG | 1 cut(s) | 1148 |
| MspI | CCGG | 4 cut(s) | 108, 248, 1639, 1662 |
| MspR9I | CCNGG | 1 cut(s) | 1370 |
| MvaI | CCWGG | 1 cut(s) | 1370 |
| MvnI | CGCG | 1 cut(s) | 39 |
| NheI | GCTAGC | 2 cut(s) | 599, 728 |
| NlaIII | CATG | 3 cut(s) | 1090, 1360, 1462 |
| NlaIV | GGNNCC | 1 cut(s) | 219 |
| NsbI | TGCGCA | 1 cut(s) | 984 |
| OliI | CACNNNNGTG | 1 cut(s) | 1272 |
| PagI | TCATGA | 1 cut(s) | 1086 |
| PdmI | GAANNNNTTC | 1 cut(s) | 901 |
| PfeI | GAWTC | 2 cut(s) | 241, 573 |
| PkrI | GCNGC | 8 cut(s) | 49, 282, 325, 328, 795, 829, 1198, 1482 |
| PleI | GAGTC | 5 cut(s) | 394, 652, 1397, 1516, 1638 |
| PpsI | GAGTC | 5 cut(s) | 394, 652, 1397, 1516, 1638 |
| Ppu21I | YACGTR | 1 cut(s) | 1346 |
| Psp124BI | GAGCTC | 1 cut(s) | 232 |
| Psp6I | CCWGG | 1 cut(s) | 1368 |
| PspGI | CCWGG | 1 cut(s) | 1368 |
| PspN4I | GGNNCC | 1 cut(s) | 219 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1253, 1285 |
| PstI | CTGCAG | 2 cut(s) | 196, 1201 |
| PsuI | RGATCY | 3 cut(s) | 496, 519, 1380 |
| PvuII | CAGCTG | 1 cut(s) | 509 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1272 |
| SacI | GAGCTC | 1 cut(s) | 232 |
| SaqAI | TTAA | 8 cut(s) | 396, 593, 624, 915, 936, 1149, 1377, 1614 |
| SatI | GCNGC | 8 cut(s) | 48, 281, 324, 327, 794, 828, 1197, 1481 |
| SchI | GAGTC | 5 cut(s) | 395, 653, 1397, 1517, 1639 |
| ScrFI | CCNGG | 1 cut(s) | 1370 |
| SduI | GDGCHC | 5 cut(s) | 88, 232, 838, 946, 1581 |
| SfaNI | GCATC | 3 cut(s) | 994, 1386, 1442 |
| SfcI | CTRYAG | 3 cut(s) | 192, 318, 1197 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1272 |
| SmlI | CTYRAG | 3 cut(s) | 467, 930, 1148 |
| SmoI | CTYRAG | 3 cut(s) | 467, 930, 1148 |
| SspMI | CTAG | 6 cut(s) | 81, 600, 729, 810, 1304, 1334 |
| SstI | GAGCTC | 1 cut(s) | 232 |
| StyD4I | CCNGG | 1 cut(s) | 1368 |
| StyI | CCWWGG | 1 cut(s) | 618 |
| TaaI | ACNGT | 7 cut(s) | 101, 310, 941, 953, 977, 1211, 1274 |
| TaiI | ACGT | 2 cut(s) | 1348, 1624 |
| TaqI | TCGA | 4 cut(s) | 292, 1389, 1436, 1581 |
| TaqII | GACCGA | 1 cut(s) | 222 |
| TauI | GCSGC | 4 cut(s) | 283, 326, 329, 796 |
| TfiI | GAWTC | 2 cut(s) | 241, 573 |
| Tru1I | TTAA | 8 cut(s) | 396, 593, 624, 915, 936, 1149, 1377, 1614 |
| Tru9I | TTAA | 8 cut(s) | 396, 593, 624, 915, 936, 1149, 1377, 1614 |
| TscAI | CASTG | 2 cut(s) | 72, 946 |
| TseI | GCWGC | 4 cut(s) | 47, 827, 1196, 1480 |
| TspDTI | ATGAA | 3 cut(s) | 765, 1103, 1475 |
| TspGWI | ACGGA | 1 cut(s) | 446 |
| TspRI | CASTG | 2 cut(s) | 72, 946 |
| Vha464I | CTTAAG | 1 cut(s) | 1148 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1190 |
| XapI | RAATTY | 5 cut(s) | 52, 421, 754, 966, 1091 |
| XmiI | GTMKAC | 1 cut(s) | 1511 |
| XmnI | GAANNNNTTC | 1 cut(s) | 901 |
| XspI | CTAG | 6 cut(s) | 81, 600, 729, 810, 1304, 1334 |