Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0005308

Physical Location & Seq

Genomic Coordinates Forward (+)

51340858 .. 51358616

Gene Structure 17759 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00369520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1668 bp

ATGAGCACAAAGCAAGGAGCTTCAACAAAGATTCAGAGCAAGAATTCCACTAACATGTCTCAGCTCAGAGCTTCCTCTAAAGCAAAGGAGTCTCAAACTCCAACTCAAAAACCCTTCAGAGCAAAATCAGTGACTCCAGATGTGAGTAATAGCAGTGATTCCAGGAGTATTAGGAGGGCTGTTCTGCAAAACAAGCCTAAATCTGGAGAACTGGTGTTGGGATCTCAGAAAAGTAAGGAACTTGAGGAGTTTAGAGTTGTGGGTAGTAGTAGAAAGCCCCAAGTTGTGGAGCAATTTGCTAAGCCCAGAAGGCAGAGGCCTGTTGTGGAGGCCAATTGTAAGAGAAATGAGGATGACCCACATCAGAAAGTGAAGGACTTGCAGGAAAAAATTGAAGTGAGTGAGAGTTTGATCATGAATTTGCAGGCTGAGGTTTTGGGATTGAAGGCAGAGTTGGGTAAGGAACGGGGGATGAACCTGGAGCTGCAGTCACAGAATAAAAAGCTTAGTGAGAATCTTGCTGCTGCTGAAGCAAAGATTGCAGCTTTAACCACTCCTCAACAGAGGGAGTCAAATGGCTACCAGAGTCCTAAATTCAAAGACCTTCAGAAACTCATTGCCAATAAATTAGAAAGCTCAGTAGTAAAGAAAGAGGCGGTGAATGAATCAAGTCCTATTAAAGTAGCATCACCTCCACCGCCACCACCACCACCTGTAATTCCTAGAGTTGCAGCCACCTTTTCACCGCCTCCACCTCCTCCACCACCATCACTCCGGCCACCACCACCACCTCCACCTCAGCCCTCGGCGAGGGTGTCAATCACTCAGAAGGCTCCAGAGCTGGTACAGTTTTATCACTCCTTGAGGAAGCAAGAGGTGAAGAGGGACTCTCCAGAATCTAGAAACGATCATAAACCAGGGGCTATTAGTGCACATAATAGCATAGTTGGCGAAATTCAAAATCGATCAGCACATCTGATAGCCATAAAAGCAGATGTTGAATCAAAAGGAGAGTTCATCAATGGCCTTATCCAGAGGGTTCTGGCTGCTGCCTATACAGATATTGAGGATGTTCTAAAATTTGTGCATTGGCTCGATGGAGAACTTGCATCGTTGGCTGATGAACGTGCTGTATTAAAGCACTTTAAGTGGCCAGAGAGGAAAGCTGATGCCATGCGAGAAGCTGCAATAGAATATCGTGGCCTTAAACAGTTGGAAAGTGAAATTTCTTCGTATAAGGATGACACCACCATTGAATGTGCAGCTGCCTTGAAGAAGATGGCTGGCTTATTAGACAAGTCGGAACAAAGCATTCAAAGGTTAGTCAAGTTGAGAAATTCAGTTATGCGTTCTTATCAGGAATGCAAAATTCCAACTGACTGGATGCTTGATTCAGGGAGTGTGAGTAAGATAAAGCTGGCTTCCATGAATTTGGCTAAAATTTACATGAAGAGAGTTACATTGGAGCTTGAATCCGTTCGATATTCAGATAGAGAATCAAGTCAAGAATCTCTTCTGGTTCAAGGCGTGAATTTTGCATACAGGGCACACCAGTTTGCTGGAGGTCTCGACTCTGAAACATTATGCGCTTTCGAAGAGATAAGACAAAGAGTACCAAGACATTTAGGAGGTTCGCAAGAGCTATTGGCAGGCATAGCATCATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

555

Amino Acids

61.53

Weight (kDa)

9.49

Isoelectric Point (pI)

61.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48280
fragaria_vesca	FvH4_4g21640 FvH4_4g21640 FvH4_4g21640 FvH4_4g21640 FvH4_4g21640 FvH4_4g21640 FvH4_4g21640
malus_domestica	MD13G1138500.v1.1 MD16G1134400.v1.1
prunus_persica	Prupe.1G103700_v2.0.a1 Prupe.1G103700_v2.0.a1 Prupe.1G103700_v2.0.a1 Prupe.1G103700_v2.0.a1 Prupe.1G103700_v2.0.a1 Prupe.1G103700_v2.0.a1 Prupe.1G103700_v2.0.a1
pyrus_communis	pycom13g12060 pycom16g11870
rosa_chinensis	RchiOBHm_Chr4g0427871
rosa_laevigata	RLG00000007205
rosa_roxburghii	Rroxscaffold_5G00369520
rosa_rugosa	Rorug04G0220200 Rorug04G0220200
rosa_samantha	Rh4AG277100 Rh4BG282800 Rh4CG298500 Rh4DG279900
rosa_wichuraiana	Rw4G024070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	286
AciI	CCGC	3 cut(s)	656, 698, 746
AclWI	GGATC	1 cut(s)	229
AcoI	YGGCCR	2 cut(s)	776, 1151
AcuI	CTGAAG	3 cut(s)	100, 549, 590
AfaI	GTAC	2 cut(s)	846, 1614
AfiI	CCNNNNNNNGG	3 cut(s)	203, 286, 810
AflIII	ACRYGT	1 cut(s)	54
AjnI	CCWGG	3 cut(s)	161, 477, 916
AjuI	GAANNNNNNNTTGG	2 cut(s)	437, 469
Alw21I	GWGCWC	2 cut(s)	8, 934
Alw26I	GTCTC	3 cut(s)	63, 96, 1571
Alw44I	GTGCAC	1 cut(s)	930
AlwI	GGATC	1 cut(s)	229
AoxI	GGCC	6 cut(s)	317, 330, 776, 1024, 1151, 1201
ApaLI	GTGCAC	1 cut(s)	930
Asp700I	GAANNNNTTC	2 cut(s)	1476, 1512
AspLEI	GCGC	1 cut(s)	1589
AsuHPI	GGTGA	4 cut(s)	670, 681, 735, 889
AsuII	TTCGAA	1 cut(s)	1593
BaeGI	GKGCMC	2 cut(s)	934, 1549
BalI	TGGCCA	1 cut(s)	1153
Bbv12I	GWGCWC	2 cut(s)	8, 934
BbvCI	CCTCAGC	2 cut(s)	429, 798
BccI	CCATC	3 cut(s)	775, 1091, 1273
BciT130I	CCWGG	3 cut(s)	163, 479, 918
BclI	TGATCA	1 cut(s)	411
BcoDI	GTCTC	3 cut(s)	63, 96, 1571
BfaI	CTAG	2 cut(s)	723, 900
BfmI	CTRYAG	1 cut(s)	485
BglI	GCCNNNNNGGC	1 cut(s)	310
BlpI	GCTNAGC	1 cut(s)	300
Bme1390I	CCNGG	3 cut(s)	163, 479, 918
BmiI	GGNNCC	1 cut(s)	834
BmrFI	CCNGG	3 cut(s)	163, 479, 918
BmsI	GCATC	4 cut(s)	695, 1118, 1159, 1374
BplI	GAGNNNNNCTC	2 cut(s)	874, 906
BpmI	CTGGAG	6 cut(s)	120, 225, 500, 819, 876, 1581
Bpu10I	CCTNAGC	2 cut(s)	429, 798
Bpu1102I	GCTNAGC	1 cut(s)	300
Bpu14I	TTCGAA	1 cut(s)	1593
BpuEI	CTTGAG	2 cut(s)	263, 883
Bsa29I	ATCGAT	1 cut(s)	964
BsaI	GGTCTC	1 cut(s)	1571
BsaJI	CCNNGG	2 cut(s)	804, 917
BsaXI	ACNNNNNCTCC	8 cut(s)	198, 228, 473, 503, 756, 786, 1390, 1420
Bsc4I	CCNNNNNNNGG	3 cut(s)	203, 286, 810
Bse1I	ACTGG	3 cut(s)	216, 1385, 1552
Bse3DI	GCAATG	1 cut(s)	615
BseBI	CCWGG	3 cut(s)	163, 479, 918
BseCI	ATCGAT	1 cut(s)	964
BseDI	CCNNGG	2 cut(s)	804, 917
BseGI	GGATG	6 cut(s)	358, 477, 1075, 1246, 1389, 1661
BseLI	CCNNNNNNNGG	3 cut(s)	203, 286, 810
BseMI	GCAATG	1 cut(s)	615
BseMII	CTCAG	7 cut(s)	74, 79, 239, 420, 651, 812, 839
BseNI	ACTGG	3 cut(s)	216, 1385, 1552
BseRI	GAGGAG	3 cut(s)	260, 546, 747
BseSI	GKGCMC	2 cut(s)	934, 1549
BsgI	GTGCAG	1 cut(s)	1281
BshFI	GGCC	6 cut(s)	319, 332, 778, 1026, 1153, 1203
BshVI	ATCGAT	1 cut(s)	964
BsiHKAI	GWGCWC	2 cut(s)	8, 934
BsiSI	CCGG	1 cut(s)	775
BslFI	GGGAC	1 cut(s)	899
BslI	CCNNNNNNNGG	3 cut(s)	203, 286, 810
BsmAI	GTCTC	3 cut(s)	63, 96, 1571
BsmFI	GGGAC	1 cut(s)	899
BsmI	GAATGC	2 cut(s)	1311, 1367
BsnI	GGCC	6 cut(s)	319, 332, 778, 1026, 1153, 1203
Bso31I	GGTCTC	1 cut(s)	1571
Bsp119I	TTCGAA	1 cut(s)	1593
Bsp1286I	GDGCHC	3 cut(s)	8, 934, 1549
Bsp143I	GATC	4 cut(s)	221, 411, 907, 965
Bsp1720I	GCTNAGC	1 cut(s)	300
BspACI	CCGC	3 cut(s)	656, 698, 746
BspANI	GGCC	6 cut(s)	319, 332, 778, 1026, 1153, 1203
BspCNI	CTCAG	7 cut(s)	73, 78, 238, 421, 650, 811, 838
BspDI	ATCGAT	1 cut(s)	964
BspHI	TCATGA	1 cut(s)	414
BspLI	GGNNCC	1 cut(s)	834
BspMAI	CTGCAG	1 cut(s)	489
BspPI	GGATC	1 cut(s)	229
BspT104I	TTCGAA	1 cut(s)	1593
BspTNI	GGTCTC	1 cut(s)	1571
BsrDI	GCAATG	1 cut(s)	615
BsrI	ACTGG	3 cut(s)	216, 1385, 1552
BssECI	CCNNGG	2 cut(s)	804, 917
BssMI	GATC	4 cut(s)	221, 411, 907, 965
Bst2UI	CCWGG	3 cut(s)	163, 479, 918
Bst4CI	ACNGT	2 cut(s)	849, 1212
Bst6I	CTCTTC	4 cut(s)	875, 1445, 1518, 1590
BstAPI	GCANNNNNTGC	1 cut(s)	539
BstBI	TTCGAA	1 cut(s)	1593
BstC8I	GCNNGC	4 cut(s)	426, 1285, 1419, 1651
BstDEI	CTNAG	9 cut(s)	60, 65, 225, 300, 429, 506, 637, 798, 825
BstENI	CCTNNNNNAGG	1 cut(s)	808
BstF5I	GGATG	6 cut(s)	358, 477, 1075, 1246, 1389, 1661
BstHHI	GCGC	1 cut(s)	1589
BstKTI	GATC	4 cut(s)	224, 414, 910, 968
BstMAI	GTCTC	3 cut(s)	63, 96, 1571
BstMBI	GATC	4 cut(s)	221, 411, 907, 965
BstNI	CCWGG	3 cut(s)	163, 479, 918
BstNSI	RCATGY	1 cut(s)	58
BstSCI	CCNGG	3 cut(s)	161, 477, 916
BstSFI	CTRYAG	1 cut(s)	485
BstSLI	GKGCMC	2 cut(s)	934, 1549
BstX2I	RGATCY	1 cut(s)	221
BstXI	CCANNNNNNTGG	3 cut(s)	1380, 1432, 1559
BstYI	RGATCY	1 cut(s)	221
Bsu15I	ATCGAT	1 cut(s)	964
BsuRI	GGCC	6 cut(s)	319, 332, 778, 1026, 1153, 1203
BsuTUI	ATCGAT	1 cut(s)	964
BtsCI	GGATG	6 cut(s)	358, 477, 1075, 1246, 1389, 1661
BtsI	GCAGTG	1 cut(s)	160
BtsIMutI	CAGTG	2 cut(s)	135, 160
Cac8I	GCNNGC	4 cut(s)	426, 1285, 1419, 1651
CciI	TCATGA	1 cut(s)	414
CfoI	GCGC	1 cut(s)	1589
ClaI	ATCGAT	1 cut(s)	964
Csp6I	GTAC	2 cut(s)	845, 1613
CviAII	CATG	5 cut(s)	55, 415, 1174, 1426, 1447
CviQI	GTAC	2 cut(s)	845, 1613
DdeI	CTNAG	9 cut(s)	60, 65, 225, 300, 429, 506, 637, 798, 825
DpnI	GATC	4 cut(s)	223, 413, 909, 967
DpnII	GATC	4 cut(s)	221, 411, 907, 965
EaeI	YGGCCR	2 cut(s)	776, 1151
Eam1104I	CTCTTC	4 cut(s)	875, 1445, 1518, 1590
EarI	CTCTTC	4 cut(s)	875, 1445, 1518, 1590
Eco147I	AGGCCT	1 cut(s)	319
Eco31I	GGTCTC	1 cut(s)	1571
Eco57I	CTGAAG	3 cut(s)	100, 549, 590
EcoNI	CCTNNNNNAGG	1 cut(s)	808
EcoRI	GAATTC	1 cut(s)	43
EcoRII	CCWGG	3 cut(s)	161, 477, 916
FaeI	CATG	5 cut(s)	58, 418, 1177, 1429, 1450
FalI	AAGNNNNNCTT	2 cut(s)	1497, 1529
FaqI	GGGAC	1 cut(s)	899
FatI	CATG	5 cut(s)	54, 414, 1173, 1425, 1446
FbaI	TGATCA	1 cut(s)	411
FokI	GGATG	6 cut(s)	365, 484, 1082, 1253, 1396, 1648
FspBI	CTAG	2 cut(s)	723, 900
GlaI	GCGC	1 cut(s)	1588
GsuI	CTGGAG	6 cut(s)	120, 225, 500, 819, 876, 1581
HaeIII	GGCC	6 cut(s)	319, 332, 778, 1026, 1153, 1203
HapII	CCGG	1 cut(s)	775
HhaI	GCGC	1 cut(s)	1589
Hin1II	CATG	5 cut(s)	58, 418, 1177, 1429, 1450
Hin6I	GCGC	1 cut(s)	1587
HinP1I	GCGC	1 cut(s)	1587
HindIII	AAGCTT	1 cut(s)	503
HpaII	CCGG	1 cut(s)	775
HphI	GGTGA	4 cut(s)	670, 681, 735, 889
Hpy166II	GTNNAC	1 cut(s)	932
Hpy8I	GTNNAC	1 cut(s)	932
HpyAV	CCTTC	6 cut(s)	124, 303, 367, 439, 614, 823
HpyCH4III	ACNGT	2 cut(s)	849, 1212
HpyCH4IV	ACGT	1 cut(s)	1126
HpyF3I	CTNAG	9 cut(s)	60, 65, 225, 300, 429, 506, 637, 798, 825
HpySE526I	ACGT	1 cut(s)	1126
Hsp92II	CATG	5 cut(s)	58, 418, 1177, 1429, 1450
HspAI	GCGC	1 cut(s)	1587
Ksp22I	TGATCA	1 cut(s)	411
Kzo9I	GATC	4 cut(s)	221, 411, 907, 965
LmnI	GCTCC	5 cut(s)	17, 289, 481, 838, 1465
LweI	GCATC	4 cut(s)	695, 1118, 1159, 1374
MaeI	CTAG	2 cut(s)	723, 900
MaeII	ACGT	1 cut(s)	1126
MaeIII	GTNAC	3 cut(s)	130, 489, 1456
MalI	GATC	4 cut(s)	223, 413, 909, 967
MboI	GATC	4 cut(s)	221, 411, 907, 965
MboII	GAAGA	7 cut(s)	892, 1221, 1285, 1288, 1462, 1505, 1607
MfeI	CAATTG	1 cut(s)	334
MflI	RGATCY	1 cut(s)	221
MhlI	GDGCHC	3 cut(s)	8, 934, 1549
MlsI	TGGCCA	1 cut(s)	1153
MluNI	TGGCCA	1 cut(s)	1153
MlyI	GAGTC	6 cut(s)	98, 127, 578, 595, 881, 1565
MmeI	TCCRAC	4 cut(s)	125, 1194, 1281, 1397
Mox20I	TGGCCA	1 cut(s)	1153
MroXI	GAANNNNTTC	2 cut(s)	1476, 1512
MscI	TGGCCA	1 cut(s)	1153
MseI	TTAA	5 cut(s)	548, 678, 1136, 1146, 1206
MslI	CAYNNNNRTG	1 cut(s)	53
Msp20I	TGGCCA	1 cut(s)	1153
MspA1I	CMGCKG	1 cut(s)	1265
MspI	CCGG	1 cut(s)	775
MspR9I	CCNGG	3 cut(s)	163, 479, 918
MunI	CAATTG	1 cut(s)	334
Mva1269I	GAATGC	2 cut(s)	1311, 1367
MvaI	CCWGG	3 cut(s)	163, 479, 918
NdeII	GATC	4 cut(s)	221, 411, 907, 965
NlaIII	CATG	5 cut(s)	58, 418, 1177, 1429, 1450
NlaIV	GGNNCC	1 cut(s)	834
NmeAIII	GCCGAG	1 cut(s)	785
NmuCI	GTSAC	2 cut(s)	130, 489
NspI	RCATGY	1 cut(s)	58
NspV	TTCGAA	1 cut(s)	1593
PagI	TCATGA	1 cut(s)	414
PceI	AGGCCT	1 cut(s)	319
PciI	ACATGT	1 cut(s)	54
PctI	GAATGC	2 cut(s)	1311, 1367
PdmI	GAANNNNTTC	2 cut(s)	1476, 1512
PflMI	CCANNNNNTGG	1 cut(s)	286
PfoI	TCCNGGA	1 cut(s)	161
PleI	GAGTC	6 cut(s)	97, 127, 577, 594, 881, 1565
PpsI	GAGTC	6 cut(s)	97, 127, 577, 594, 881, 1565
PscI	ACATGT	1 cut(s)	54
Psp6I	CCWGG	3 cut(s)	161, 477, 916
PspGI	CCWGG	3 cut(s)	161, 477, 916
PspN4I	GGNNCC	1 cut(s)	834
PstI	CTGCAG	1 cut(s)	489
PsuI	RGATCY	1 cut(s)	221
PvuII	CAGCTG	1 cut(s)	1265
RsaI	GTAC	2 cut(s)	846, 1614
RsaNI	GTAC	2 cut(s)	845, 1613
RseI	CAYNNNNRTG	1 cut(s)	53
SaqAI	TTAA	5 cut(s)	548, 678, 1136, 1146, 1206
Sau3AI	GATC	4 cut(s)	221, 411, 907, 965
SchI	GAGTC	6 cut(s)	98, 127, 578, 595, 881, 1565
ScrFI	CCNGG	3 cut(s)	163, 479, 918
SduI	GDGCHC	3 cut(s)	8, 934, 1549
SfaNI	GCATC	4 cut(s)	695, 1118, 1159, 1374
SfcI	CTRYAG	1 cut(s)	485
SfuI	TTCGAA	1 cut(s)	1593
SmiMI	CAYNNNNRTG	1 cut(s)	53
SmlI	CTYRAG	2 cut(s)	242, 862
SmoI	CTYRAG	2 cut(s)	242, 862
SseBI	AGGCCT	1 cut(s)	319
SsiI	CCGC	3 cut(s)	656, 698, 746
SspMI	CTAG	2 cut(s)	723, 900
StuI	AGGCCT	1 cut(s)	319
StyD4I	CCNGG	3 cut(s)	161, 477, 916
TaaI	ACNGT	2 cut(s)	849, 1212
TaiI	ACGT	1 cut(s)	1129
TaqI	TCGA	5 cut(s)	964, 1095, 1480, 1569, 1593
Tru1I	TTAA	5 cut(s)	548, 678, 1136, 1146, 1206
Tru9I	TTAA	5 cut(s)	548, 678, 1136, 1146, 1206
TscAI	CASTG	2 cut(s)	135, 160
TseFI	GTSAC	2 cut(s)	130, 489
Tsp45I	GTSAC	2 cut(s)	130, 489
TspDTI	ATGAA	7 cut(s)	431, 488, 678, 1006, 1137, 1442, 1463
TspGWI	ACGGA	1 cut(s)	1465
TspRI	CASTG	2 cut(s)	135, 160
Van91I	CCANNNNNTGG	1 cut(s)	286
VneI	GTGCAC	1 cut(s)	930
XagI	CCTNNNNNAGG	1 cut(s)	808
XbaI	TCTAGA	1 cut(s)	899
XceI	RCATGY	1 cut(s)	58
XmnI	GAANNNNTTC	2 cut(s)	1476, 1512
XspI	CTAG	2 cut(s)	723, 900

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.