Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0005308

Physical Location & Seq

Genomic Coordinates Forward (+)

24682241 .. 24687233

Gene Structure 4993 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g21640.t7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1683 bp

ATGAGTACAAAGCAAGGAGCTTCAACAAAGATTCAGAGCAAACATTCCACTAACATGTCTCAGCTCAGAGCTTCCTCTAAAGCAAAGGAGTCTCAATCTCCAACTCAAAGACCCTCCAGAGCAAAATCTGTGACTCCAGATGTGAATCATAGCAGTGATTCCAGGAGTGTTAGGAGGGCTCTCTTGCAAAACAAGCCTAAATCTGGAGAATTGGTGTTGGGATCTCAGAAAAGTAAGGATTTTGAGGAGTTTAAAGTTGTGGGTAGTAGTAGAAAGCCCCAAGTTGTTGAGCAATTTGCTAAGCCAAGAAGGCAGAGGCCTGTTGTGGAGGCCAATTGTAAGAGAAATGAAGATGACCCACATAGGAATATGAAGGAAATGCAGGAAAAGATCGAAATGAGTGAGAGTATGATCATGAAATTGCAGGCTGAGGTTTTGGGATTGAAGGTAGAGTTGGACAAGGAACATGGATTGAATTTGGAGCTGCAGGCAAAGAATAAAAAGCTTAGTGAGAATCTTACTGCCGCTGAAGCAAAGATTGCAGCTTTAACCACTCCTCAACAGAGAGAGTCAAATGGTTACCAGAGTCCTAAATTCAAAGACCTGCAGAAACTCATTGCCAACAAATTAGAATGCTCAGTAGTAAAGAAAGAGGCATTGAATGAACCAAGTCCTATTAAAGCAGCATCACCTCCACCACCACCACCACCACCACCACCACCACCACCTGTAATTCCTAGAGTTGCAGCTACCTTTTCACCACCTCCACCTCCTCCACCGCCATCACTCCTGCCGCCACCACCACCTCCACCTCAGCCCTCAGTGAGGGTGTCAACCACTCAGAAGGCTCCAGAGCTTGTACAGATCTATCACTCATTGAGAAAGCGAGAGGTGAAGAGGGACTCTCCAGAATCTAGAAGCCATCAGAAACCAGGAGCTATTAGTGCACATAATAGCATAGTTGGTGAAATTCAAAATCGATCAGCACATCTGATTGCCATTAAAGCAGATGTTGAAACAAAAGGAGAGTTCATCAATGGCCTCATCCAGAAGGTTCTGGCTGCTGCCTATAAAGATATTGAGGACGTTCTGAAATTTGTGGATTGGCTTGATGGAGAACTTGCATCTTTGGCTGATGAACGTGCTGTATTAAAGCACTTTAAGTGGCCGGAGAGAAAAGCTGATGCCATGCGAGAAGCTGCAATAGAATATCGTGACCTTAAATTGTTGGAAAGTGAAATTTCTTCTTATAAGGATGACACCACCATTCAATGTGCAGCTGCCTTGAAGAAGATGGCTGGCTTATTAGACAAGTCGGAGCGAAGCATTCAAAGATTAGTCAAAATGAGAAATTCAGTTATGCGTTCTTATCAAGAATGCAAAATTCCAACTGACTGGATGCTTGATTCAGGGATTGGGAGTAAGATAAAGCAGGCTTCCATAAATTTGGCTAAAATTTACATGAAGAGGGTTACATCGGAGCTTGAATCCGTTCGGTATTCAGATAGAGAATCAAGTCAAGAATCTCTTCTGGTTCAAGGTGTAAATTTTGCATACAGGGCACACCAGTTTGCTGGAGGTCTTGACTCTGAAACATTATGCGCTTTTGAAGAGATAAGACAGCGAGTACCAAGACATTTAGGAGGTTCGCAAGAGCTATTGGCCGGCATAGCATCATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

561

Amino Acids

62.24

Weight (kDa)

9.51

Isoelectric Point (pI)

60.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48280
fragaria_vesca	FvH4_4g21640 FvH4_4g21640 FvH4_4g21640 FvH4_4g21640 FvH4_4g21640 FvH4_4g21640 FvH4_4g21640
malus_domestica	MD13G1138500.v1.1 MD16G1134400.v1.1
prunus_persica	Prupe.1G103700_v2.0.a1 Prupe.1G103700_v2.0.a1 Prupe.1G103700_v2.0.a1 Prupe.1G103700_v2.0.a1 Prupe.1G103700_v2.0.a1 Prupe.1G103700_v2.0.a1 Prupe.1G103700_v2.0.a1
pyrus_communis	pycom13g12060 pycom16g11870
rosa_chinensis	RchiOBHm_Chr4g0427871
rosa_laevigata	RLG00000007205
rosa_roxburghii	Rroxscaffold_5G00369520
rosa_rugosa	Rorug04G0220200 Rorug04G0220200
rosa_samantha	Rh4AG277100 Rh4BG282800 Rh4CG298500 Rh4DG279900
rosa_wichuraiana	Rw4G024070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1251
Acc36I	ACCTGC	1 cut(s)	612
AciI	CCGC	3 cut(s)	525, 779, 794
AclWI	GGATC	1 cut(s)	229
AcoI	YGGCCR	2 cut(s)	1166, 1662
AcuI	CTGAAG	1 cut(s)	549
AfaI	GTAC	3 cut(s)	7, 861, 1629
AfiI	CCNNNNNNNGG	2 cut(s)	203, 825
AflIII	ACRYGT	1 cut(s)	54
AjnI	CCWGG	2 cut(s)	161, 931
AjuI	GAANNNNNNNTTGG	2 cut(s)	437, 469
Alw21I	GWGCWC	1 cut(s)	949
Alw26I	GTCTC	2 cut(s)	63, 96
Alw44I	GTGCAC	1 cut(s)	945
AlwI	GGATC	1 cut(s)	229
AoxI	GGCC	5 cut(s)	317, 330, 1039, 1166, 1662
ApaLI	GTGCAC	1 cut(s)	945
ApeKI	GCWGC	9 cut(s)	484, 542, 683, 746, 1061, 1064, 1199, 1277, 1280
Asp700I	GAANNNNTTC	2 cut(s)	1491, 1527
AspLEI	GCGC	1 cut(s)	1604
AsuHPI	GGTGA	4 cut(s)	681, 750, 904, 977
BaeGI	GKGCMC	2 cut(s)	949, 1564
BanII	GRGCYC	1 cut(s)	181
Bbv12I	GWGCWC	1 cut(s)	949
BbvCI	CCTCAGC	2 cut(s)	429, 813
BbvI	GCAGC	9 cut(s)	471, 554, 695, 758, 1048, 1051, 1186, 1267, 1289
BccI	CCATC	4 cut(s)	790, 930, 1106, 1288
BciT130I	CCWGG	2 cut(s)	163, 933
BclI	TGATCA	1 cut(s)	411
BcoDI	GTCTC	2 cut(s)	63, 96
BfaI	CTAG	2 cut(s)	738, 915
BfmI	CTRYAG	2 cut(s)	485, 605
BfuAI	ACCTGC	1 cut(s)	612
BglI	GCCNNNNNGGC	1 cut(s)	310
BglII	AGATCT	1 cut(s)	864
BlpI	GCTNAGC	1 cut(s)	300
Bme1390I	CCNGG	2 cut(s)	163, 933
BmiI	GGNNCC	1 cut(s)	849
BmrFI	CCNGG	2 cut(s)	163, 933
BmsI	GCATC	4 cut(s)	695, 1133, 1174, 1389
BplI	GAGNNNNNCTC	2 cut(s)	889, 921
BpmI	CTGGAG	6 cut(s)	100, 120, 225, 834, 891, 1596
Bpu10I	CCTNAGC	2 cut(s)	429, 813
Bpu1102I	GCTNAGC	1 cut(s)	300
Bsa29I	ATCGAT	1 cut(s)	979
BsaBI	GATNNNNATC	1 cut(s)	144
BsaXI	ACNNNNNCTCC	2 cut(s)	198, 228
Bsc4I	CCNNNNNNNGG	2 cut(s)	203, 825
Bse118I	RCCGGY	1 cut(s)	1664
Bse1I	ACTGG	2 cut(s)	1400, 1567
Bse3DI	GCAATG	1 cut(s)	615
Bse8I	GATNNNNATC	1 cut(s)	144
BseBI	CCWGG	2 cut(s)	163, 933
BseCI	ATCGAT	1 cut(s)	979
BseGI	GGATG	4 cut(s)	1044, 1261, 1404, 1676
BseJI	GATNNNNATC	1 cut(s)	144
BseLI	CCNNNNNNNGG	2 cut(s)	203, 825
BseMI	GCAATG	1 cut(s)	615
BseMII	CTCAG	8 cut(s)	74, 79, 239, 420, 651, 827, 834, 854
BseNI	ACTGG	2 cut(s)	1400, 1567
BseRI	GAGGAG	3 cut(s)	260, 546, 762
BseSI	GKGCMC	2 cut(s)	949, 1564
BseXI	GCAGC	9 cut(s)	471, 554, 695, 758, 1048, 1051, 1186, 1267, 1289
BsgI	GTGCAG	1 cut(s)	1296
BshFI	GGCC	5 cut(s)	319, 332, 1041, 1168, 1664
BshVI	ATCGAT	1 cut(s)	979
BsiHKAI	GWGCWC	1 cut(s)	949
BsiSI	CCGG	2 cut(s)	1169, 1665
BslFI	GGGAC	1 cut(s)	914
BslI	CCNNNNNNNGG	2 cut(s)	203, 825
BsmAI	GTCTC	2 cut(s)	63, 96
BsmFI	GGGAC	1 cut(s)	914
BsmI	GAATGC	3 cut(s)	638, 1326, 1382
BsnI	GGCC	5 cut(s)	319, 332, 1041, 1168, 1664
Bsp1286I	GDGCHC	3 cut(s)	181, 949, 1564
Bsp1407I	TGTACA	1 cut(s)	859
Bsp143I	GATC	5 cut(s)	221, 390, 411, 864, 980
Bsp1720I	GCTNAGC	1 cut(s)	300
BspACI	CCGC	3 cut(s)	525, 779, 794
BspANI	GGCC	5 cut(s)	319, 332, 1041, 1168, 1664
BspCNI	CTCAG	8 cut(s)	73, 78, 238, 421, 650, 826, 833, 853
BspDI	ATCGAT	1 cut(s)	979
BspHI	TCATGA	1 cut(s)	414
BspLI	GGNNCC	1 cut(s)	849
BspMAI	CTGCAG	2 cut(s)	489, 609
BspMI	ACCTGC	1 cut(s)	612
BspPI	GGATC	1 cut(s)	229
BsrDI	GCAATG	1 cut(s)	615
BsrFI	RCCGGY	1 cut(s)	1664
BsrGI	TGTACA	1 cut(s)	859
BsrI	ACTGG	2 cut(s)	1400, 1567
BssAI	RCCGGY	1 cut(s)	1664
BssMI	GATC	5 cut(s)	221, 390, 411, 864, 980
Bst2UI	CCWGG	2 cut(s)	163, 933
Bst6I	CTCTTC	4 cut(s)	890, 1460, 1533, 1605
BstAPI	GCANNNNNTGC	1 cut(s)	539
BstAUI	TGTACA	1 cut(s)	859
BstC8I	GCNNGC	5 cut(s)	426, 489, 1300, 1434, 1666
BstEII	GGTNACC	1 cut(s)	578
BstENI	CCTNNNNNAGG	1 cut(s)	823
BstF5I	GGATG	4 cut(s)	1044, 1261, 1404, 1676
BstHHI	GCGC	1 cut(s)	1604
BstKTI	GATC	5 cut(s)	224, 393, 414, 867, 983
BstMAI	GTCTC	2 cut(s)	63, 96
BstMBI	GATC	5 cut(s)	221, 390, 411, 864, 980
BstMWI	GCNNNNNNNGC	9 cut(s)	193, 310, 530, 539, 944, 1004, 1130, 1559, 1670
BstNI	CCWGG	2 cut(s)	163, 933
BstNSI	RCATGY	1 cut(s)	58
BstPI	GGTNACC	1 cut(s)	578
BstSCI	CCNGG	2 cut(s)	161, 931
BstSFI	CTRYAG	2 cut(s)	485, 605
BstSLI	GKGCMC	2 cut(s)	949, 1564
BstV1I	GCAGC	9 cut(s)	471, 554, 695, 758, 1048, 1051, 1186, 1267, 1289
BstX2I	RGATCY	2 cut(s)	221, 864
BstXI	CCANNNNNNTGG	3 cut(s)	1395, 1447, 1574
BstYI	RGATCY	2 cut(s)	221, 864
Bsu15I	ATCGAT	1 cut(s)	979
BsuRI	GGCC	5 cut(s)	319, 332, 1041, 1168, 1664
BsuTUI	ATCGAT	1 cut(s)	979
BtsCI	GGATG	4 cut(s)	1044, 1261, 1404, 1676
BtsI	GCAGTG	1 cut(s)	160
BtsIMutI	CAGTG	2 cut(s)	160, 828
BveI	ACCTGC	1 cut(s)	612
Cac8I	GCNNGC	5 cut(s)	426, 489, 1300, 1434, 1666
CciI	TCATGA	1 cut(s)	414
CfoI	GCGC	1 cut(s)	1604
Cfr10I	RCCGGY	1 cut(s)	1664
ClaI	ATCGAT	1 cut(s)	979
Csp6I	GTAC	3 cut(s)	6, 860, 1628
CviAII	CATG	5 cut(s)	55, 415, 467, 1189, 1462
CviQI	GTAC	3 cut(s)	6, 860, 1628
DpnI	GATC	5 cut(s)	223, 392, 413, 866, 982
DpnII	GATC	5 cut(s)	221, 390, 411, 864, 980
DraI	TTTAAA	1 cut(s)	253
EaeI	YGGCCR	2 cut(s)	1166, 1662
Eam1104I	CTCTTC	4 cut(s)	890, 1460, 1533, 1605
EarI	CTCTTC	4 cut(s)	890, 1460, 1533, 1605
Eco147I	AGGCCT	1 cut(s)	319
Eco24I	GRGCYC	1 cut(s)	181
Eco57I	CTGAAG	1 cut(s)	549
Eco91I	GGTNACC	1 cut(s)	578
EcoNI	CCTNNNNNAGG	1 cut(s)	823
EcoO65I	GGTNACC	1 cut(s)	578
EcoRII	CCWGG	2 cut(s)	161, 931
EcoT38I	GRGCYC	1 cut(s)	181
FaeI	CATG	5 cut(s)	58, 418, 470, 1192, 1465
FalI	AAGNNNNNCTT	2 cut(s)	1512, 1544
FaqI	GGGAC	1 cut(s)	914
FatI	CATG	5 cut(s)	54, 414, 466, 1188, 1461
FbaI	TGATCA	1 cut(s)	411
FokI	GGATG	4 cut(s)	1031, 1268, 1411, 1663
FriOI	GRGCYC	1 cut(s)	181
FspBI	CTAG	2 cut(s)	738, 915
GlaI	GCGC	1 cut(s)	1603
GsuI	CTGGAG	6 cut(s)	100, 120, 225, 834, 891, 1596
HaeIII	GGCC	5 cut(s)	319, 332, 1041, 1168, 1664
HapII	CCGG	2 cut(s)	1169, 1665
HhaI	GCGC	1 cut(s)	1604
Hin1II	CATG	5 cut(s)	58, 418, 470, 1192, 1465
Hin6I	GCGC	1 cut(s)	1602
HinP1I	GCGC	1 cut(s)	1602
HincII	GTYRAC	1 cut(s)	834
HindII	GTYRAC	1 cut(s)	834
HindIII	AAGCTT	1 cut(s)	503
HpaII	CCGG	2 cut(s)	1169, 1665
HphI	GGTGA	4 cut(s)	681, 750, 904, 977
Hpy166II	GTNNAC	2 cut(s)	834, 947
Hpy8I	GTNNAC	2 cut(s)	834, 947
HpyAV	CCTTC	5 cut(s)	303, 367, 439, 838, 1045
HpyCH4IV	ACGT	2 cut(s)	1086, 1141
HpyF10VI	GCNNNNNNNGC	9 cut(s)	193, 310, 530, 539, 944, 1004, 1130, 1559, 1670
HpySE526I	ACGT	2 cut(s)	1086, 1141
Hsp92II	CATG	5 cut(s)	58, 418, 470, 1192, 1465
HspAI	GCGC	1 cut(s)	1602
KroI	GCCGGC	1 cut(s)	1664
KroNI	GCCGGC	1 cut(s)	1666
Ksp22I	TGATCA	1 cut(s)	411
Kzo9I	GATC	5 cut(s)	221, 390, 411, 864, 980
LmnI	GCTCC	6 cut(s)	17, 481, 853, 935, 1318, 1480
Lsp1109I	GCAGC	9 cut(s)	471, 554, 695, 758, 1048, 1051, 1186, 1267, 1289
LweI	GCATC	4 cut(s)	695, 1133, 1174, 1389
MaeI	CTAG	2 cut(s)	738, 915
MaeII	ACGT	2 cut(s)	1086, 1141
MaeIII	GTNAC	4 cut(s)	130, 578, 1214, 1471
MalI	GATC	5 cut(s)	223, 392, 413, 866, 982
MboI	GATC	5 cut(s)	221, 390, 411, 864, 980
MboII	GAAGA	8 cut(s)	362, 907, 1236, 1300, 1303, 1477, 1520, 1622
MfeI	CAATTG	1 cut(s)	334
MflI	RGATCY	2 cut(s)	221, 864
MhlI	GDGCHC	3 cut(s)	181, 949, 1564
MlyI	GAGTC	6 cut(s)	98, 127, 578, 595, 896, 1580
MmeI	TCCRAC	5 cut(s)	125, 435, 1209, 1296, 1412
MroNI	GCCGGC	1 cut(s)	1664
MroXI	GAANNNNTTC	2 cut(s)	1491, 1527
MseI	TTAA	7 cut(s)	252, 548, 678, 1002, 1151, 1161, 1221
MslI	CAYNNNNRTG	2 cut(s)	53, 153
MspA1I	CMGCKG	2 cut(s)	527, 1280
MspI	CCGG	2 cut(s)	1169, 1665
MspR9I	CCNGG	2 cut(s)	163, 933
MunI	CAATTG	1 cut(s)	334
Mva1269I	GAATGC	3 cut(s)	638, 1326, 1382
MvaI	CCWGG	2 cut(s)	163, 933
MwoI	GCNNNNNNNGC	9 cut(s)	193, 310, 530, 539, 944, 1004, 1130, 1559, 1670
NaeI	GCCGGC	1 cut(s)	1666
NdeII	GATC	5 cut(s)	221, 390, 411, 864, 980
NgoMIV	GCCGGC	1 cut(s)	1664
NlaIII	CATG	5 cut(s)	58, 418, 470, 1192, 1465
NlaIV	GGNNCC	1 cut(s)	849
NmuCI	GTSAC	2 cut(s)	130, 1214
NspI	RCATGY	1 cut(s)	58
PagI	TCATGA	1 cut(s)	414
PceI	AGGCCT	1 cut(s)	319
PciI	ACATGT	1 cut(s)	54
PctI	GAATGC	3 cut(s)	638, 1326, 1382
PdiI	GCCGGC	1 cut(s)	1666
PdmI	GAANNNNTTC	2 cut(s)	1491, 1527
PfeI	GAWTC	9 cut(s)	31, 145, 158, 514, 911, 1406, 1487, 1511, 1523
PfoI	TCCNGGA	1 cut(s)	161
PleI	GAGTC	6 cut(s)	97, 127, 577, 594, 896, 1580
PpsI	GAGTC	6 cut(s)	97, 127, 577, 594, 896, 1580
PscI	ACATGT	1 cut(s)	54
PsiI	TTATAA	1 cut(s)	1251
Psp6I	CCWGG	2 cut(s)	161, 931
PspEI	GGTNACC	1 cut(s)	578
PspGI	CCWGG	2 cut(s)	161, 931
PspN4I	GGNNCC	1 cut(s)	849
PstI	CTGCAG	2 cut(s)	489, 609
PsuI	RGATCY	2 cut(s)	221, 864
PvuII	CAGCTG	1 cut(s)	1280
RsaI	GTAC	3 cut(s)	7, 861, 1629
RsaNI	GTAC	3 cut(s)	6, 860, 1628
RseI	CAYNNNNRTG	2 cut(s)	53, 153
SaqAI	TTAA	7 cut(s)	252, 548, 678, 1002, 1151, 1161, 1221
Sau3AI	GATC	5 cut(s)	221, 390, 411, 864, 980
SchI	GAGTC	6 cut(s)	98, 127, 578, 595, 896, 1580
ScrFI	CCNGG	2 cut(s)	163, 933
SduI	GDGCHC	3 cut(s)	181, 949, 1564
SfaNI	GCATC	4 cut(s)	695, 1133, 1174, 1389
SfcI	CTRYAG	2 cut(s)	485, 605
SmiMI	CAYNNNNRTG	2 cut(s)	53, 153
SseBI	AGGCCT	1 cut(s)	319
SsiI	CCGC	3 cut(s)	525, 779, 794
SspMI	CTAG	2 cut(s)	738, 915
StuI	AGGCCT	1 cut(s)	319
StyD4I	CCNGG	2 cut(s)	161, 931
TaiI	ACGT	2 cut(s)	1089, 1144
TaqI	TCGA	2 cut(s)	393, 979
TatI	WGTACW	2 cut(s)	5, 859
TauI	GCSGC	2 cut(s)	527, 796
TfiI	GAWTC	9 cut(s)	31, 145, 158, 514, 911, 1406, 1487, 1511, 1523
Tru1I	TTAA	7 cut(s)	252, 548, 678, 1002, 1151, 1161, 1221
Tru9I	TTAA	7 cut(s)	252, 548, 678, 1002, 1151, 1161, 1221
TscAI	CASTG	2 cut(s)	160, 828
TseFI	GTSAC	2 cut(s)	130, 1214
TseI	GCWGC	9 cut(s)	484, 542, 683, 746, 1061, 1064, 1199, 1277, 1280
Tsp45I	GTSAC	2 cut(s)	130, 1214
TspDTI	ATGAA	7 cut(s)	363, 386, 431, 678, 1021, 1152, 1478
TspGWI	ACGGA	1 cut(s)	1480
TspRI	CASTG	2 cut(s)	160, 828
VneI	GTGCAC	1 cut(s)	945
XagI	CCTNNNNNAGG	1 cut(s)	823
XbaI	TCTAGA	1 cut(s)	914
XceI	RCATGY	1 cut(s)	58
XmnI	GAANNNNTTC	2 cut(s)	1491, 1527
XspI	CTAG	2 cut(s)	738, 915

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.