Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0005308

Physical Location & Seq

Genomic Coordinates Forward (+)

49963444 .. 49968071

Gene Structure 4628 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G024070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1665 bp

ATGAGCACAAGGCAAGGAGCTTCAACAAAGATTCAGAGCAAGAATTCCACTAACATGTCTCAGCTCAGAGCTTCCTCTAAAGCAAAGGAGTCTCAAACTCCAACTCAAAGACCCTCCAGAGCAAAATCAGTGACTCCAGATGTGAGTAATAGCAGTGATTCCAGGAGTATTAGGAGGGCTGTTCTGCAAAACAAGCCTAAATCTGGAGAACTGGTGTTGGGATCTCAGAAAAGTAAGGAACTTGAGGAGTTTAGAGTTGTGGGTAGTAGTAGAAAGCCCCAAGTTGTGGAGCAATTTGCTAAGCCCAGAAGGCAGAGGCCTGTTGTGGAGGCCAATTGTACGAGAAATGAGGATGACCCACATCAGAAAGTGAAGGACTTGCAGGAAAAAATTGAAGTGAGTGAGAGTTTGATCATGAATTTGCAGGCTGAGGTTTTGGGATTGAAGGCAGAGTTGGGTAAGGAACAGGGGATGAACCTGGAGCTGCAGTCACAGAATAAAAAGCTTACTGAGAATCTTGCTGCTGCTGAAGCAAAGATTGCAGCTTTAACCACTCCTCAACAGAGGGAGTCAAATGGCTACCAGAGTCCTAAATTCAAAGACCTTCAGAAACTCATTGCCAACAAATTAGAAAGCTCAGTAGTAAAGAAAGAGCCAGTGAATGAATCAAGTCCTATTAAAGTAGCATCACCTCCACCGCCACCACCACCTGTAATTCCTAGAGTTGCAGCCACCTTTTCACCGCCTCCACCTCCTCCACCACCATCACTCCGGCCACCACCACCACCTCCACCTCAGCCCTCGGCGAGGGTGTCAATCACTCAGAAGGCTTCAGAGCTTGTACAGTTTTATCACTCCTTGAGGAAGCAAGAGGTGAAGAGGGACTCTCCAGAATCTAGAAACCATCATAAACCAGGGGCTATTAGTGCACATAATAGCATAGTTGGCGAAATTCAAAATCGATCAGCACATCTGATAGCTATAAAAGCAGATGTTGAATCAAAAGGAGAGTTCATCAATGGCCTTATCCAGAGGGTTCTGGCTGCTGCCTATACAGATATTGAGGATGTTCTAAAATTTGTCCATTGGCTCGATGGAGAACTTGCATCGTTGGCTGATGAACGTGCTGTATTAAAGCACTTTAAGTGGCCAGAGAGGAAAGCTGATGCCATGCGAGAAGCTGCAATAGAATATCGTGACCTTAAACAGTTGGAAAGTGAAATTTCTTCGTATAAGGATGACACCACTATTCAATGTGCAGCTGCCTTGAAGAAGATGGCTGGCTTATTAGACAAGTCGGAGCAAAGCATTCAAAGGTTAGTCAAGTTGAGAAATTCAGTTATGCGTTCTTATCAGGAATGCAAAATTCCAACTGACTGGATGCTTGATTCAGGGATTGTGAGTAAGATAAAGCTGGCTTCCATGAATTTGGCTAAAATTTACATGAAGAGAGTTACATTGGAGCTTGAATCCATTCGATATTCAGATAGAGAATCAAGTCAAGAATCTCTTCTGGTTCAAGGCGTGAATTTTGCATACAGGGCACACCAGTTTGCTGGAGGTCTCGACTCTGAAACATTGTGCGCTTTTGAAGAGATAAGACAACGAGTACCAAGACATTTAGGAGGTTCGCAAGAGCTATTGGCAGGCATAGCATCATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

554

Amino Acids

61.52

Weight (kDa)

9.48

Isoelectric Point (pI)

60.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48280
fragaria_vesca	FvH4_4g21640 FvH4_4g21640 FvH4_4g21640 FvH4_4g21640 FvH4_4g21640 FvH4_4g21640 FvH4_4g21640
malus_domestica	MD13G1138500.v1.1 MD16G1134400.v1.1
prunus_persica	Prupe.1G103700_v2.0.a1 Prupe.1G103700_v2.0.a1 Prupe.1G103700_v2.0.a1 Prupe.1G103700_v2.0.a1 Prupe.1G103700_v2.0.a1 Prupe.1G103700_v2.0.a1 Prupe.1G103700_v2.0.a1
pyrus_communis	pycom13g12060 pycom16g11870
rosa_chinensis	RchiOBHm_Chr4g0427871
rosa_laevigata	RLG00000007205
rosa_roxburghii	Rroxscaffold_5G00369520
rosa_rugosa	Rorug04G0220200 Rorug04G0220200
rosa_samantha	Rh4AG277100 Rh4BG282800 Rh4CG298500 Rh4DG279900
rosa_wichuraiana	Rw4G024070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	286
AciI	CCGC	2 cut(s)	698, 743
AclWI	GGATC	1 cut(s)	229
AcoI	YGGCCR	2 cut(s)	773, 1148
AcuI	CTGAAG	3 cut(s)	549, 590, 816
AfaI	GTAC	3 cut(s)	340, 843, 1611
AfiI	CCNNNNNNNGG	3 cut(s)	203, 286, 807
AflIII	ACRYGT	1 cut(s)	54
AjnI	CCWGG	3 cut(s)	161, 477, 913
AjuI	GAANNNNNNNTTGG	2 cut(s)	437, 469
Alw21I	GWGCWC	2 cut(s)	8, 931
Alw26I	GTCTC	3 cut(s)	63, 96, 1568
Alw44I	GTGCAC	1 cut(s)	927
AlwI	GGATC	1 cut(s)	229
AoxI	GGCC	5 cut(s)	317, 330, 773, 1021, 1148
ApaLI	GTGCAC	1 cut(s)	927
Asp700I	GAANNNNTTC	2 cut(s)	1473, 1509
AspLEI	GCGC	1 cut(s)	1586
AsuHPI	GGTGA	3 cut(s)	681, 732, 886
BaeGI	GKGCMC	2 cut(s)	931, 1546
BalI	TGGCCA	1 cut(s)	1150
Bbv12I	GWGCWC	2 cut(s)	8, 931
BbvCI	CCTCAGC	2 cut(s)	429, 795
BccI	CCATC	4 cut(s)	772, 912, 1088, 1270
BciT130I	CCWGG	3 cut(s)	163, 479, 915
BclI	TGATCA	1 cut(s)	411
BcoDI	GTCTC	3 cut(s)	63, 96, 1568
BfaI	CTAG	2 cut(s)	720, 897
BfmI	CTRYAG	1 cut(s)	485
BglI	GCCNNNNNGGC	1 cut(s)	310
BlpI	GCTNAGC	1 cut(s)	300
Bme1390I	CCNGG	3 cut(s)	163, 479, 915
BmrFI	CCNGG	3 cut(s)	163, 479, 915
BmsI	GCATC	4 cut(s)	695, 1115, 1156, 1371
BplI	GAGNNNNNCTC	2 cut(s)	871, 903
BpmI	CTGGAG	6 cut(s)	100, 120, 225, 500, 873, 1578
Bpu10I	CCTNAGC	2 cut(s)	429, 795
Bpu1102I	GCTNAGC	1 cut(s)	300
BpuEI	CTTGAG	2 cut(s)	263, 880
Bsa29I	ATCGAT	1 cut(s)	961
BsaI	GGTCTC	1 cut(s)	1568
BsaJI	CCNNGG	2 cut(s)	801, 914
BsaXI	ACNNNNNCTCC	6 cut(s)	198, 228, 473, 503, 753, 783
Bsc4I	CCNNNNNNNGG	3 cut(s)	203, 286, 807
Bse1I	ACTGG	4 cut(s)	216, 656, 1382, 1549
Bse3DI	GCAATG	1 cut(s)	615
BseBI	CCWGG	3 cut(s)	163, 479, 915
BseCI	ATCGAT	1 cut(s)	961
BseDI	CCNNGG	2 cut(s)	801, 914
BseGI	GGATG	6 cut(s)	358, 477, 1072, 1243, 1386, 1658
BseLI	CCNNNNNNNGG	3 cut(s)	203, 286, 807
BseMI	GCAATG	1 cut(s)	615
BseMII	CTCAG	8 cut(s)	74, 79, 239, 420, 501, 651, 809, 836
BseNI	ACTGG	4 cut(s)	216, 656, 1382, 1549
BseRI	GAGGAG	3 cut(s)	260, 546, 744
BseSI	GKGCMC	2 cut(s)	931, 1546
BsgI	GTGCAG	1 cut(s)	1278
BshFI	GGCC	5 cut(s)	319, 332, 775, 1023, 1150
BshVI	ATCGAT	1 cut(s)	961
BsiHKAI	GWGCWC	2 cut(s)	8, 931
BsiSI	CCGG	1 cut(s)	772
BslFI	GGGAC	1 cut(s)	896
BslI	CCNNNNNNNGG	3 cut(s)	203, 286, 807
BsmAI	GTCTC	3 cut(s)	63, 96, 1568
BsmFI	GGGAC	1 cut(s)	896
BsmI	GAATGC	2 cut(s)	1308, 1364
BsnI	GGCC	5 cut(s)	319, 332, 775, 1023, 1150
Bso31I	GGTCTC	1 cut(s)	1568
Bsp1286I	GDGCHC	3 cut(s)	8, 931, 1546
Bsp1407I	TGTACA	1 cut(s)	841
Bsp143I	GATC	3 cut(s)	221, 411, 962
Bsp1720I	GCTNAGC	1 cut(s)	300
BspACI	CCGC	2 cut(s)	698, 743
BspANI	GGCC	5 cut(s)	319, 332, 775, 1023, 1150
BspCNI	CTCAG	8 cut(s)	73, 78, 238, 421, 502, 650, 808, 835
BspDI	ATCGAT	1 cut(s)	961
BspHI	TCATGA	1 cut(s)	414
BspMAI	CTGCAG	1 cut(s)	489
BspPI	GGATC	1 cut(s)	229
BspTNI	GGTCTC	1 cut(s)	1568
BsrDI	GCAATG	1 cut(s)	615
BsrGI	TGTACA	1 cut(s)	841
BsrI	ACTGG	4 cut(s)	216, 656, 1382, 1549
BssECI	CCNNGG	2 cut(s)	801, 914
BssMI	GATC	3 cut(s)	221, 411, 962
Bst2UI	CCWGG	3 cut(s)	163, 479, 915
Bst4CI	ACNGT	2 cut(s)	846, 1209
Bst6I	CTCTTC	4 cut(s)	872, 1442, 1515, 1587
BstAPI	GCANNNNNTGC	1 cut(s)	539
BstAUI	TGTACA	1 cut(s)	841
BstC8I	GCNNGC	4 cut(s)	426, 1282, 1416, 1648
BstDEI	CTNAG	9 cut(s)	60, 65, 225, 300, 429, 510, 637, 795, 822
BstENI	CCTNNNNNAGG	1 cut(s)	805
BstF5I	GGATG	6 cut(s)	358, 477, 1072, 1243, 1386, 1658
BstHHI	GCGC	1 cut(s)	1586
BstKTI	GATC	3 cut(s)	224, 414, 965
BstMAI	GTCTC	3 cut(s)	63, 96, 1568
BstMBI	GATC	3 cut(s)	221, 411, 962
BstNI	CCWGG	3 cut(s)	163, 479, 915
BstNSI	RCATGY	1 cut(s)	58
BstSCI	CCNGG	3 cut(s)	161, 477, 913
BstSFI	CTRYAG	1 cut(s)	485
BstSLI	GKGCMC	2 cut(s)	931, 1546
BstX2I	RGATCY	1 cut(s)	221
BstXI	CCANNNNNNTGG	3 cut(s)	1377, 1429, 1556
BstYI	RGATCY	1 cut(s)	221
Bsu15I	ATCGAT	1 cut(s)	961
BsuRI	GGCC	5 cut(s)	319, 332, 775, 1023, 1150
BsuTUI	ATCGAT	1 cut(s)	961
BtsCI	GGATG	6 cut(s)	358, 477, 1072, 1243, 1386, 1658
BtsI	GCAGTG	1 cut(s)	160
BtsIMutI	CAGTG	3 cut(s)	135, 160, 663
Cac8I	GCNNGC	4 cut(s)	426, 1282, 1416, 1648
CciI	TCATGA	1 cut(s)	414
CfoI	GCGC	1 cut(s)	1586
ClaI	ATCGAT	1 cut(s)	961
Csp6I	GTAC	3 cut(s)	339, 842, 1610
CviAII	CATG	5 cut(s)	55, 415, 1171, 1423, 1444
CviQI	GTAC	3 cut(s)	339, 842, 1610
DdeI	CTNAG	9 cut(s)	60, 65, 225, 300, 429, 510, 637, 795, 822
DpnI	GATC	3 cut(s)	223, 413, 964
DpnII	GATC	3 cut(s)	221, 411, 962
EaeI	YGGCCR	2 cut(s)	773, 1148
Eam1104I	CTCTTC	4 cut(s)	872, 1442, 1515, 1587
EarI	CTCTTC	4 cut(s)	872, 1442, 1515, 1587
Eco147I	AGGCCT	1 cut(s)	319
Eco31I	GGTCTC	1 cut(s)	1568
Eco57I	CTGAAG	3 cut(s)	549, 590, 816
EcoNI	CCTNNNNNAGG	1 cut(s)	805
EcoRI	GAATTC	1 cut(s)	43
EcoRII	CCWGG	3 cut(s)	161, 477, 913
FaeI	CATG	5 cut(s)	58, 418, 1174, 1426, 1447
FalI	AAGNNNNNCTT	2 cut(s)	1494, 1526
FaqI	GGGAC	1 cut(s)	896
FatI	CATG	5 cut(s)	54, 414, 1170, 1422, 1443
FbaI	TGATCA	1 cut(s)	411
FokI	GGATG	6 cut(s)	365, 484, 1079, 1250, 1393, 1645
FspBI	CTAG	2 cut(s)	720, 897
GlaI	GCGC	1 cut(s)	1585
GsuI	CTGGAG	6 cut(s)	100, 120, 225, 500, 873, 1578
HaeIII	GGCC	5 cut(s)	319, 332, 775, 1023, 1150
HapII	CCGG	1 cut(s)	772
HhaI	GCGC	1 cut(s)	1586
Hin1II	CATG	5 cut(s)	58, 418, 1174, 1426, 1447
Hin6I	GCGC	1 cut(s)	1584
HinP1I	GCGC	1 cut(s)	1584
HindIII	AAGCTT	1 cut(s)	503
HpaII	CCGG	1 cut(s)	772
HphI	GGTGA	3 cut(s)	681, 732, 886
Hpy166II	GTNNAC	1 cut(s)	929
Hpy8I	GTNNAC	1 cut(s)	929
HpyAV	CCTTC	5 cut(s)	303, 367, 439, 614, 820
HpyCH4III	ACNGT	2 cut(s)	846, 1209
HpyCH4IV	ACGT	1 cut(s)	1123
HpyF3I	CTNAG	9 cut(s)	60, 65, 225, 300, 429, 510, 637, 795, 822
HpySE526I	ACGT	1 cut(s)	1123
Hsp92II	CATG	5 cut(s)	58, 418, 1174, 1426, 1447
HspAI	GCGC	1 cut(s)	1584
Ksp22I	TGATCA	1 cut(s)	411
Kzo9I	GATC	3 cut(s)	221, 411, 962
LmnI	GCTCC	5 cut(s)	17, 289, 481, 1300, 1462
LweI	GCATC	4 cut(s)	695, 1115, 1156, 1371
MaeI	CTAG	2 cut(s)	720, 897
MaeII	ACGT	1 cut(s)	1123
MaeIII	GTNAC	4 cut(s)	130, 489, 1196, 1453
MalI	GATC	3 cut(s)	223, 413, 964
MboI	GATC	3 cut(s)	221, 411, 962
MboII	GAAGA	7 cut(s)	889, 1218, 1282, 1285, 1459, 1502, 1604
MfeI	CAATTG	1 cut(s)	334
MflI	RGATCY	1 cut(s)	221
MhlI	GDGCHC	3 cut(s)	8, 931, 1546
MlsI	TGGCCA	1 cut(s)	1150
MluNI	TGGCCA	1 cut(s)	1150
MlyI	GAGTC	6 cut(s)	98, 127, 578, 595, 878, 1562
MmeI	TCCRAC	4 cut(s)	125, 1191, 1278, 1394
Mox20I	TGGCCA	1 cut(s)	1150
MroXI	GAANNNNTTC	2 cut(s)	1473, 1509
MscI	TGGCCA	1 cut(s)	1150
MseI	TTAA	5 cut(s)	548, 678, 1133, 1143, 1203
MslI	CAYNNNNRTG	1 cut(s)	53
Msp20I	TGGCCA	1 cut(s)	1150
MspA1I	CMGCKG	1 cut(s)	1262
MspI	CCGG	1 cut(s)	772
MspR9I	CCNGG	3 cut(s)	163, 479, 915
MunI	CAATTG	1 cut(s)	334
Mva1269I	GAATGC	2 cut(s)	1308, 1364
MvaI	CCWGG	3 cut(s)	163, 479, 915
NdeII	GATC	3 cut(s)	221, 411, 962
NlaIII	CATG	5 cut(s)	58, 418, 1174, 1426, 1447
NmeAIII	GCCGAG	1 cut(s)	782
NmuCI	GTSAC	3 cut(s)	130, 489, 1196
NspI	RCATGY	1 cut(s)	58
PagI	TCATGA	1 cut(s)	414
PceI	AGGCCT	1 cut(s)	319
PciI	ACATGT	1 cut(s)	54
PctI	GAATGC	2 cut(s)	1308, 1364
PdmI	GAANNNNTTC	2 cut(s)	1473, 1509
PflMI	CCANNNNNTGG	1 cut(s)	286
PfoI	TCCNGGA	1 cut(s)	161
PleI	GAGTC	6 cut(s)	97, 127, 577, 594, 878, 1562
PpsI	GAGTC	6 cut(s)	97, 127, 577, 594, 878, 1562
PscI	ACATGT	1 cut(s)	54
Psp6I	CCWGG	3 cut(s)	161, 477, 913
PspGI	CCWGG	3 cut(s)	161, 477, 913
PstI	CTGCAG	1 cut(s)	489
PsuI	RGATCY	1 cut(s)	221
PvuII	CAGCTG	1 cut(s)	1262
RsaI	GTAC	3 cut(s)	340, 843, 1611
RsaNI	GTAC	3 cut(s)	339, 842, 1610
RseI	CAYNNNNRTG	1 cut(s)	53
SaqAI	TTAA	5 cut(s)	548, 678, 1133, 1143, 1203
Sau3AI	GATC	3 cut(s)	221, 411, 962
SchI	GAGTC	6 cut(s)	98, 127, 578, 595, 878, 1562
ScrFI	CCNGG	3 cut(s)	163, 479, 915
SduI	GDGCHC	3 cut(s)	8, 931, 1546
SfaNI	GCATC	4 cut(s)	695, 1115, 1156, 1371
SfcI	CTRYAG	1 cut(s)	485
SmiMI	CAYNNNNRTG	1 cut(s)	53
SmlI	CTYRAG	2 cut(s)	242, 859
SmoI	CTYRAG	2 cut(s)	242, 859
SseBI	AGGCCT	1 cut(s)	319
SsiI	CCGC	2 cut(s)	698, 743
SspMI	CTAG	2 cut(s)	720, 897
StuI	AGGCCT	1 cut(s)	319
StyD4I	CCNGG	3 cut(s)	161, 477, 913
TaaI	ACNGT	2 cut(s)	846, 1209
TaiI	ACGT	1 cut(s)	1126
TaqI	TCGA	4 cut(s)	961, 1092, 1477, 1566
TatI	WGTACW	1 cut(s)	841
Tru1I	TTAA	5 cut(s)	548, 678, 1133, 1143, 1203
Tru9I	TTAA	5 cut(s)	548, 678, 1133, 1143, 1203
TscAI	CASTG	3 cut(s)	135, 160, 663
TseFI	GTSAC	3 cut(s)	130, 489, 1196
Tsp45I	GTSAC	3 cut(s)	130, 489, 1196
TspDTI	ATGAA	7 cut(s)	431, 488, 678, 1003, 1134, 1439, 1460
TspRI	CASTG	3 cut(s)	135, 160, 663
Van91I	CCANNNNNTGG	1 cut(s)	286
VneI	GTGCAC	1 cut(s)	927
XagI	CCTNNNNNAGG	1 cut(s)	805
XbaI	TCTAGA	1 cut(s)	896
XceI	RCATGY	1 cut(s)	58
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1091
XmnI	GAANNNNTTC	2 cut(s)	1473, 1509
XspI	CTAG	2 cut(s)	720, 897

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.