Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0005308

Physical Location & Seq

Genomic Coordinates Forward (+)

59369532 .. 59374505

Gene Structure 4974 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG277100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGAGCACAAAGCAAGGAGCTTCAACAAAGATTCAGAGCAAGAATTCCACTAACATGTCTCAGCTCAGAGCTTCCTCTAAAGCAAAGGAGTCTCAAACTCCAACTCAAAGACCCTCCAGAGCAAAATCAGTGACTCCAGATGTGACTAATAGCAGTGATTCCAGGAGTATTAGGAGGGCTGTTCTGCAAAACAAGCCTAAATCTGGAGAATTGGTGTTGGGATCTCAGAAAAGTAAGGAACTTGAGGAGTGTAGAGTTGTGGGTAGTAGTAGGAAGCCCCAAGTTGTGGAGCAATTTGCTAAGCCCAGAAGGCAGAGGCCTGTTGTGGAGGCCAATTGTAAGAGAAATGAGGATGACCCGCATCAGAAAGTGAAGGACTTGCAGGAAAAAATTGAAGTGAGTGAGAGTTTGATCATGAATTTGCAGGCTGAGGTTTTGGGATTGAAGGCAGAGTTGGGTAAGGAACAGGGGATGAACCTGGAGCTGCAGTCACAGAATAAAAAGCTTAGTGAGAATCTTGCTGCTGCTGAAGCAAAGATTGCAGCTTTAACCACTCCTCAACAGAGGGAGTCAAATGGCTACCAGAGTCCTAAATTCAAAGATCTTCAGAAACTCATTGCCAACAAATTAGAAAGCTCAGTAGTAAAGAAAGAGGCAGTGAATGAATCAAGTCCTATTAAAGTAGCATCACCTCCACCGCCACCACCACCTGTAATTCCTAGAGTTGCAGCCACCTTTTCACCGCCTCCACCTCCTCCACCACCATCACTCCGGCCACCACCACCACCTCCACCTCAGCCCTCAGCGAGGGTGTCAATCACTCAGAAGGCTTCAGAGCTTGTACAGTTTTATCACTCCTTGAGGAAGCAAGAGGTGAAGAGGGACTCTCCAGAATCTAGAAACCATCATAAACCAGGGGCTATTAGTGCACATAATAGCATAGTTGGCGAAATTCAAAATCGATCAGCACATCTGATAGCTATAAAAGCAGATGTTGAATCAAAAGGAGAGTTCATCAATGGCCTTATCCAGAGGGTTCTGGCTGCTGCCTATACAGATATTGAGGATGTTCTAAAATTTGTGCATTGGCTCGATGGAGAACTTGCATCGTTGGTAATTTCTAATGCCTGTACAGTAATATTCGATTGTACCAAATCAATCAAGAATCATATTTTCTTTACCATTCCATATGTAGAAGTCAAGATTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

403

Amino Acids

44.37

Weight (kDa)

9.64

Isoelectric Point (pI)

67.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48280
fragaria_vesca	FvH4_4g21640 FvH4_4g21640 FvH4_4g21640 FvH4_4g21640 FvH4_4g21640 FvH4_4g21640 FvH4_4g21640
malus_domestica	MD13G1138500.v1.1 MD16G1134400.v1.1
prunus_persica	Prupe.1G103700_v2.0.a1 Prupe.1G103700_v2.0.a1 Prupe.1G103700_v2.0.a1 Prupe.1G103700_v2.0.a1 Prupe.1G103700_v2.0.a1 Prupe.1G103700_v2.0.a1 Prupe.1G103700_v2.0.a1
pyrus_communis	pycom13g12060 pycom16g11870
rosa_chinensis	RchiOBHm_Chr4g0427871
rosa_laevigata	RLG00000007205
rosa_roxburghii	Rroxscaffold_5G00369520
rosa_rugosa	Rorug04G0220200 Rorug04G0220200
rosa_samantha	Rh4AG277100 Rh4BG282800 Rh4CG298500 Rh4DG279900
rosa_wichuraiana	Rw4G024070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	286
AciI	CCGC	3 cut(s)	359, 698, 743
AclWI	GGATC	1 cut(s)	229
AcoI	YGGCCR	1 cut(s)	773
AcsI	RAATTY	5 cut(s)	43, 418, 593, 951, 1076
AcuI	CTGAAG	3 cut(s)	549, 590, 816
AfaI	GTAC	3 cut(s)	843, 1132, 1150
AfiI	CCNNNNNNNGG	3 cut(s)	203, 286, 807
AflIII	ACRYGT	1 cut(s)	54
AgsI	TTSAA	6 cut(s)	24, 395, 445, 598, 956, 998
AjnI	CCWGG	3 cut(s)	161, 477, 913
AjuI	GAANNNNNNNTTGG	2 cut(s)	437, 469
AluBI	AGCT	9 cut(s)	20, 64, 71, 484, 505, 545, 636, 838, 980
AluI	AGCT	9 cut(s)	20, 64, 71, 484, 505, 545, 636, 838, 980
Alw21I	GWGCWC	2 cut(s)	8, 931
Alw26I	GTCTC	2 cut(s)	63, 96
Alw44I	GTGCAC	1 cut(s)	927
AlwI	GGATC	1 cut(s)	229
AoxI	GGCC	4 cut(s)	317, 330, 773, 1021
ApaLI	GTGCAC	1 cut(s)	927
ApeKI	GCWGC	7 cut(s)	484, 521, 524, 542, 728, 1043, 1046
ApoI	RAATTY	5 cut(s)	43, 418, 593, 951, 1076
AsuHPI	GGTGA	3 cut(s)	681, 732, 886
BaeGI	GKGCMC	1 cut(s)	931
Bbv12I	GWGCWC	2 cut(s)	8, 931
BbvCI	CCTCAGC	3 cut(s)	429, 795, 802
BbvI	GCAGC	7 cut(s)	471, 508, 511, 554, 740, 1030, 1033
BccI	CCATC	3 cut(s)	772, 912, 1088
BciT130I	CCWGG	3 cut(s)	163, 479, 915
BclI	TGATCA	1 cut(s)	411
BcoDI	GTCTC	2 cut(s)	63, 96
BfaI	CTAG	3 cut(s)	720, 897, 1210
BfmI	CTRYAG	1 cut(s)	485
BglI	GCCNNNNNGGC	1 cut(s)	310
BglII	AGATCT	1 cut(s)	601
BisI	GCNGC	7 cut(s)	485, 522, 525, 543, 729, 1044, 1047
BlpI	GCTNAGC	1 cut(s)	300
BlsI	GCNGC	7 cut(s)	486, 523, 526, 544, 730, 1045, 1048
Bme1390I	CCNGG	3 cut(s)	163, 479, 915
BmrFI	CCNGG	3 cut(s)	163, 479, 915
BmsI	GCATC	3 cut(s)	370, 695, 1115
BplI	GAGNNNNNCTC	2 cut(s)	871, 903
BpmI	CTGGAG	5 cut(s)	100, 120, 225, 500, 873
Bpu10I	CCTNAGC	3 cut(s)	429, 795, 802
Bpu1102I	GCTNAGC	1 cut(s)	300
BpuEI	CTTGAG	2 cut(s)	263, 880
Bsa29I	ATCGAT	1 cut(s)	961
BsaJI	CCNNGG	1 cut(s)	914
BsaXI	ACNNNNNCTCC	6 cut(s)	198, 228, 473, 503, 753, 783
Bsc4I	CCNNNNNNNGG	3 cut(s)	203, 286, 807
Bse3DI	GCAATG	1 cut(s)	615
BseBI	CCWGG	3 cut(s)	163, 479, 915
BseCI	ATCGAT	1 cut(s)	961
BseDI	CCNNGG	1 cut(s)	914
BseGI	GGATG	3 cut(s)	358, 477, 1072
BseLI	CCNNNNNNNGG	3 cut(s)	203, 286, 807
BseMI	GCAATG	1 cut(s)	615
BseMII	CTCAG	8 cut(s)	74, 79, 239, 420, 651, 809, 816, 836
BseRI	GAGGAG	3 cut(s)	260, 546, 744
BseSI	GKGCMC	1 cut(s)	931
BseXI	GCAGC	7 cut(s)	471, 508, 511, 554, 740, 1030, 1033
BshFI	GGCC	4 cut(s)	319, 332, 775, 1023
BshVI	ATCGAT	1 cut(s)	961
BsiHKAI	GWGCWC	2 cut(s)	8, 931
BsiSI	CCGG	1 cut(s)	772
BslFI	GGGAC	1 cut(s)	896
BslI	CCNNNNNNNGG	3 cut(s)	203, 286, 807
BsmAI	GTCTC	2 cut(s)	63, 96
BsmFI	GGGAC	1 cut(s)	896
BsnI	GGCC	4 cut(s)	319, 332, 775, 1023
Bsp1286I	GDGCHC	2 cut(s)	8, 931
Bsp1407I	TGTACA	2 cut(s)	841, 1130
Bsp143I	GATC	4 cut(s)	221, 411, 601, 962
Bsp1720I	GCTNAGC	1 cut(s)	300
BspACI	CCGC	3 cut(s)	359, 698, 743
BspANI	GGCC	4 cut(s)	319, 332, 775, 1023
BspCNI	CTCAG	8 cut(s)	73, 78, 238, 421, 650, 808, 815, 835
BspDI	ATCGAT	1 cut(s)	961
BspHI	TCATGA	1 cut(s)	414
BspMAI	CTGCAG	1 cut(s)	489
BspPI	GGATC	1 cut(s)	229
BsrDI	GCAATG	1 cut(s)	615
BsrGI	TGTACA	2 cut(s)	841, 1130
BssECI	CCNNGG	1 cut(s)	914
BssMI	GATC	4 cut(s)	221, 411, 601, 962
Bst2UI	CCWGG	3 cut(s)	163, 479, 915
Bst4CI	ACNGT	2 cut(s)	846, 1135
Bst6I	CTCTTC	1 cut(s)	872
BstAPI	GCANNNNNTGC	1 cut(s)	539
BstAUI	TGTACA	2 cut(s)	841, 1130
BstC8I	GCNNGC	1 cut(s)	426
BstENI	CCTNNNNNAGG	1 cut(s)	805
BstF5I	GGATG	3 cut(s)	358, 477, 1072
BstKTI	GATC	4 cut(s)	224, 414, 604, 965
BstMAI	GTCTC	2 cut(s)	63, 96
BstMBI	GATC	4 cut(s)	221, 411, 601, 962
BstMWI	GCNNNNNNNGC	7 cut(s)	193, 310, 530, 539, 926, 945, 986
BstNI	CCWGG	3 cut(s)	163, 479, 915
BstNSI	RCATGY	1 cut(s)	58
BstSCI	CCNGG	3 cut(s)	161, 477, 913
BstSFI	CTRYAG	1 cut(s)	485
BstSLI	GKGCMC	1 cut(s)	931
BstV1I	GCAGC	7 cut(s)	471, 508, 511, 554, 740, 1030, 1033
BstX2I	RGATCY	2 cut(s)	221, 601
BstYI	RGATCY	2 cut(s)	221, 601
Bsu15I	ATCGAT	1 cut(s)	961
BsuRI	GGCC	4 cut(s)	319, 332, 775, 1023
BsuTUI	ATCGAT	1 cut(s)	961
BtsCI	GGATG	3 cut(s)	358, 477, 1072
BtsI	GCAGTG	2 cut(s)	160, 663
BtsIMutI	CAGTG	3 cut(s)	135, 160, 663
Cac8I	GCNNGC	1 cut(s)	426
CciI	TCATGA	1 cut(s)	414
ClaI	ATCGAT	1 cut(s)	961
Csp6I	GTAC	3 cut(s)	842, 1131, 1149
CviAII	CATG	2 cut(s)	55, 415
CviQI	GTAC	3 cut(s)	842, 1131, 1149
DpnI	GATC	4 cut(s)	223, 413, 603, 964
DpnII	GATC	4 cut(s)	221, 411, 601, 962
EaeI	YGGCCR	1 cut(s)	773
Eam1104I	CTCTTC	1 cut(s)	872
EarI	CTCTTC	1 cut(s)	872
Eco147I	AGGCCT	1 cut(s)	319
Eco57I	CTGAAG	3 cut(s)	549, 590, 816
EcoNI	CCTNNNNNAGG	1 cut(s)	805
EcoRI	GAATTC	1 cut(s)	43
EcoRII	CCWGG	3 cut(s)	161, 477, 913
FaeI	CATG	2 cut(s)	58, 418
FaqI	GGGAC	1 cut(s)	896
FatI	CATG	2 cut(s)	54, 414
FauI	CCCGC	1 cut(s)	366
FauNDI	CATATG	1 cut(s)	1189
FbaI	TGATCA	1 cut(s)	411
Fnu4HI	GCNGC	7 cut(s)	485, 522, 525, 543, 729, 1044, 1047
FokI	GGATG	3 cut(s)	365, 484, 1079
Fsp4HI	GCNGC	7 cut(s)	485, 522, 525, 543, 729, 1044, 1047
FspBI	CTAG	3 cut(s)	720, 897, 1210
GluI	GCNGC	7 cut(s)	485, 522, 525, 543, 729, 1044, 1047
GsuI	CTGGAG	5 cut(s)	100, 120, 225, 500, 873
HaeIII	GGCC	4 cut(s)	319, 332, 775, 1023
HapII	CCGG	1 cut(s)	772
Hin1II	CATG	2 cut(s)	58, 418
HindIII	AAGCTT	1 cut(s)	503
HpaII	CCGG	1 cut(s)	772
HphI	GGTGA	3 cut(s)	681, 732, 886
Hpy166II	GTNNAC	1 cut(s)	929
Hpy188I	TCNGA	8 cut(s)	36, 68, 228, 366, 609, 825, 835, 975
Hpy188III	TCNNGA	9 cut(s)	117, 137, 204, 415, 890, 897, 1030, 1162, 1201
Hpy8I	GTNNAC	1 cut(s)	929
HpyAV	CCTTC	4 cut(s)	303, 367, 439, 820
HpyCH4III	ACNGT	2 cut(s)	846, 1135
HpyCH4V	TGCA	9 cut(s)	187, 382, 424, 487, 542, 728, 929, 1084, 1106
HpyF10VI	GCNNNNNNNGC	7 cut(s)	193, 310, 530, 539, 926, 945, 986
Hsp92II	CATG	2 cut(s)	58, 418
Ksp22I	TGATCA	1 cut(s)	411
Kzo9I	GATC	4 cut(s)	221, 411, 601, 962
LmnI	GCTCC	3 cut(s)	17, 289, 481
Lsp1109I	GCAGC	7 cut(s)	471, 508, 511, 554, 740, 1030, 1033
LweI	GCATC	3 cut(s)	370, 695, 1115
MaeI	CTAG	3 cut(s)	720, 897, 1210
MaeIII	GTNAC	3 cut(s)	130, 142, 489
MalI	GATC	4 cut(s)	223, 413, 603, 964
MboI	GATC	4 cut(s)	221, 411, 601, 962
MboII	GAAGA	2 cut(s)	596, 889
MfeI	CAATTG	1 cut(s)	334
MflI	RGATCY	2 cut(s)	221, 601
MhlI	GDGCHC	2 cut(s)	8, 931
MlyI	GAGTC	5 cut(s)	98, 127, 578, 595, 878
MmeI	TCCRAC	1 cut(s)	125
MseI	TTAA	2 cut(s)	548, 678
MslI	CAYNNNNRTG	1 cut(s)	53
MspI	CCGG	1 cut(s)	772
MspR9I	CCNGG	3 cut(s)	163, 479, 915
MunI	CAATTG	1 cut(s)	334
MvaI	CCWGG	3 cut(s)	163, 479, 915
MwoI	GCNNNNNNNGC	7 cut(s)	193, 310, 530, 539, 926, 945, 986
NdeI	CATATG	1 cut(s)	1189
NdeII	GATC	4 cut(s)	221, 411, 601, 962
NlaIII	CATG	2 cut(s)	58, 418
NmuCI	GTSAC	3 cut(s)	130, 142, 489
NspI	RCATGY	1 cut(s)	58
PagI	TCATGA	1 cut(s)	414
PceI	AGGCCT	1 cut(s)	319
PciI	ACATGT	1 cut(s)	54
PfeI	GAWTC	7 cut(s)	31, 158, 514, 665, 893, 998, 1165
PflMI	CCANNNNNTGG	1 cut(s)	286
PfoI	TCCNGGA	1 cut(s)	161
PkrI	GCNGC	7 cut(s)	486, 523, 526, 544, 730, 1045, 1048
PleI	GAGTC	5 cut(s)	97, 127, 577, 594, 878
PpsI	GAGTC	5 cut(s)	97, 127, 577, 594, 878
PscI	ACATGT	1 cut(s)	54
Psp6I	CCWGG	3 cut(s)	161, 477, 913
PspGI	CCWGG	3 cut(s)	161, 477, 913
PstI	CTGCAG	1 cut(s)	489
PsuI	RGATCY	2 cut(s)	221, 601
RsaI	GTAC	3 cut(s)	843, 1132, 1150
RsaNI	GTAC	3 cut(s)	842, 1131, 1149
RseI	CAYNNNNRTG	1 cut(s)	53
SaqAI	TTAA	2 cut(s)	548, 678
SatI	GCNGC	7 cut(s)	485, 522, 525, 543, 729, 1044, 1047
Sau3AI	GATC	4 cut(s)	221, 411, 601, 962
SchI	GAGTC	5 cut(s)	98, 127, 578, 595, 878
ScrFI	CCNGG	3 cut(s)	163, 479, 915
SduI	GDGCHC	2 cut(s)	8, 931
SfaNI	GCATC	3 cut(s)	370, 695, 1115
SfcI	CTRYAG	1 cut(s)	485
SmiMI	CAYNNNNRTG	1 cut(s)	53
SmlI	CTYRAG	2 cut(s)	242, 859
SmoI	CTYRAG	2 cut(s)	242, 859
SseBI	AGGCCT	1 cut(s)	319
SsiI	CCGC	3 cut(s)	359, 698, 743
SspI	AATATT	1 cut(s)	1140
SspMI	CTAG	3 cut(s)	720, 897, 1210
StuI	AGGCCT	1 cut(s)	319
StyD4I	CCNGG	3 cut(s)	161, 477, 913
TaaI	ACNGT	2 cut(s)	846, 1135
TaqI	TCGA	3 cut(s)	961, 1092, 1143
TatI	WGTACW	2 cut(s)	841, 1130
TfiI	GAWTC	7 cut(s)	31, 158, 514, 665, 893, 998, 1165
Tru1I	TTAA	2 cut(s)	548, 678
Tru9I	TTAA	2 cut(s)	548, 678
TscAI	CASTG	3 cut(s)	135, 160, 663
TseFI	GTSAC	3 cut(s)	130, 142, 489
TseI	GCWGC	7 cut(s)	484, 521, 524, 542, 728, 1043, 1046
Tsp45I	GTSAC	3 cut(s)	130, 142, 489
TspDTI	ATGAA	4 cut(s)	431, 488, 678, 1003
TspRI	CASTG	3 cut(s)	135, 160, 663
Van91I	CCANNNNNTGG	1 cut(s)	286
VneI	GTGCAC	1 cut(s)	927
XagI	CCTNNNNNAGG	1 cut(s)	805
XapI	RAATTY	5 cut(s)	43, 418, 593, 951, 1076
XbaI	TCTAGA	1 cut(s)	896
XceI	RCATGY	1 cut(s)	58
XspI	CTAG	3 cut(s)	720, 897, 1210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.