Protein CHUP1, chloroplastic-like
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G48280 |
| fragaria_vesca | FvH4_4g21640 FvH4_4g21640 FvH4_4g21640 FvH4_4g21640 FvH4_4g21640 FvH4_4g21640 FvH4_4g21640 |
| malus_domestica | MD13G1138500.v1.1 MD16G1134400.v1.1 |
| prunus_persica | Prupe.1G103700_v2.0.a1 Prupe.1G103700_v2.0.a1 Prupe.1G103700_v2.0.a1 Prupe.1G103700_v2.0.a1 Prupe.1G103700_v2.0.a1 Prupe.1G103700_v2.0.a1 Prupe.1G103700_v2.0.a1 |
| pyrus_communis | pycom13g12060 pycom16g11870 |
| rosa_chinensis | RchiOBHm_Chr4g0427871 |
| rosa_laevigata | RLG00000007205 |
| rosa_roxburghii | Rroxscaffold_5G00369520 |
| rosa_rugosa | Rorug04G0220200 Rorug04G0220200 |
| rosa_samantha | Rh4AG277100 Rh4BG282800 Rh4CG298500 Rh4DG279900 |
| rosa_wichuraiana | Rw4G024070 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 19 |
| AbsI | CCTCGAGG | 1 cut(s) | 265 |
| Acc65I | GGTACC | 1 cut(s) | 815 |
| AccB1I | GGYRCC | 1 cut(s) | 815 |
| AclWI | GGATC | 1 cut(s) | 196 |
| AcsI | RAATTY | 5 cut(s) | 112, 569, 951, 1076, 1480 |
| AcuI | CTGAAG | 4 cut(s) | 21, 437, 522, 1502 |
| AcyI | GRCGYC | 1 cut(s) | 17 |
| AfaI | GTAC | 4 cut(s) | 133, 621, 817, 1611 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 170, 396 |
| AgeI | ACCGGT | 1 cut(s) | 913 |
| AgsI | TTSAA | 9 cut(s) | 574, 956, 998, 1100, 1144, 1190, 1270, 1363, 1469 |
| AhlI | ACTAGT | 1 cut(s) | 923 |
| AjnI | CCWGG | 1 cut(s) | 246 |
| Alw21I | GWGCWC | 2 cut(s) | 558, 931 |
| Alw26I | GTCTC | 4 cut(s) | 9, 706, 900, 1568 |
| Alw44I | GTGCAC | 1 cut(s) | 927 |
| AlwI | GGATC | 1 cut(s) | 196 |
| Ama87I | CYCGRG | 2 cut(s) | 265, 1632 |
| AoxI | GGCC | 3 cut(s) | 249, 719, 1148 |
| ApaLI | GTGCAC | 1 cut(s) | 927 |
| ApoI | RAATTY | 5 cut(s) | 112, 569, 951, 1076, 1480 |
| AsiGI | ACCGGT | 1 cut(s) | 913 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 313, 849, 1473, 1509 |
| Asp718I | GGTACC | 1 cut(s) | 815 |
| AspLEI | GCGC | 1 cut(s) | 415 |
| AspS9I | GGNCC | 2 cut(s) | 719, 756 |
| AsuC2I | CCSGG | 2 cut(s) | 718, 1614 |
| AsuHPI | GGTGA | 2 cut(s) | 145, 1538 |
| AsuII | TTCGAA | 2 cut(s) | 317, 1590 |
| AvaI | CYCGRG | 2 cut(s) | 265, 1632 |
| AvaII | GGWCC | 1 cut(s) | 756 |
| BaeGI | GKGCMC | 1 cut(s) | 931 |
| BanI | GGYRCC | 1 cut(s) | 815 |
| BanII | GRGCYC | 3 cut(s) | 145, 566, 1546 |
| BbsI | GAAGAC | 1 cut(s) | 330 |
| Bbv12I | GWGCWC | 2 cut(s) | 558, 931 |
| BbvCI | CCTCAGC | 1 cut(s) | 281 |
| BccI | CCATC | 4 cut(s) | 716, 754, 912, 1270 |
| BceAI | ACGGC | 1 cut(s) | 4 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 42, 76, 1513, 1547 |
| BciT130I | CCWGG | 1 cut(s) | 248 |
| BcnI | CCSGG | 2 cut(s) | 718, 1614 |
| BcoDI | GTCTC | 4 cut(s) | 9, 706, 900, 1568 |
| BcuI | ACTAGT | 1 cut(s) | 923 |
| BfaI | CTAG | 1 cut(s) | 924 |
| BfmI | CTRYAG | 2 cut(s) | 458, 1044 |
| BfoI | RGCGCY | 1 cut(s) | 416 |
| Bme1390I | CCNGG | 3 cut(s) | 248, 718, 1614 |
| Bme18I | GGWCC | 1 cut(s) | 756 |
| BmeT110I | CYCGRG | 2 cut(s) | 265, 1632 |
| BmgT120I | GGNCC | 2 cut(s) | 719, 756 |
| BmiI | GGNNCC | 5 cut(s) | 294, 758, 817, 831, 1630 |
| BmrFI | CCNGG | 3 cut(s) | 248, 718, 1614 |
| BmrI | ACTGGG | 1 cut(s) | 784 |
| BmsI | GCATC | 2 cut(s) | 1156, 1371 |
| BmuI | ACTGGG | 1 cut(s) | 784 |
| BpiI | GAAGAC | 1 cut(s) | 330 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 248, 280 |
| BpmI | CTGGAG | 4 cut(s) | 566, 816, 911, 1578 |
| Bpu10I | CCTNAGC | 1 cut(s) | 281 |
| Bpu14I | TTCGAA | 2 cut(s) | 317, 1590 |
| BpuEI | CTTGAG | 2 cut(s) | 230, 386 |
| BpuMI | CCSGG | 2 cut(s) | 718, 1614 |
| BsaHI | GRCGYC | 1 cut(s) | 17 |
| BsaI | GGTCTC | 1 cut(s) | 1568 |
| BsaWI | WCCGGW | 1 cut(s) | 913 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 167, 197, 446, 476, 634, 664 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 170, 396 |
| Bse118I | RCCGGY | 4 cut(s) | 79, 389, 812, 913 |
| Bse1I | ACTGG | 3 cut(s) | 790, 894, 1549 |
| Bse3DI | GCAATG | 2 cut(s) | 96, 591 |
| BseBI | CCWGG | 1 cut(s) | 248 |
| BseGI | GGATG | 4 cut(s) | 708, 1063, 1243, 1386 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 170, 396 |
| BseMI | GCAATG | 2 cut(s) | 96, 591 |
| BseMII | CTCAG | 5 cut(s) | 43, 206, 272, 836, 1143 |
| BseNI | ACTGG | 3 cut(s) | 790, 894, 1549 |
| BseRI | GAGGAG | 3 cut(s) | 142, 227, 660 |
| BseSI | GKGCMC | 1 cut(s) | 931 |
| BsgI | GTGCAG | 1 cut(s) | 1278 |
| BshFI | GGCC | 3 cut(s) | 251, 721, 1150 |
| BshNI | GGYRCC | 1 cut(s) | 815 |
| BshTI | ACCGGT | 1 cut(s) | 913 |
| BsiHKAI | GWGCWC | 2 cut(s) | 558, 931 |
| BsiHKCI | CYCGRG | 2 cut(s) | 265, 1632 |
| BsiSI | CCGG | 7 cut(s) | 80, 164, 390, 717, 813, 914, 1614 |
| BslFI | GGGAC | 2 cut(s) | 85, 742 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 170, 396 |
| BsmAI | GTCTC | 4 cut(s) | 9, 706, 900, 1568 |
| BsmFI | GGGAC | 2 cut(s) | 85, 742 |
| BsnI | GGCC | 3 cut(s) | 251, 721, 1150 |
| Bso31I | GGTCTC | 1 cut(s) | 1568 |
| BsoBI | CYCGRG | 2 cut(s) | 265, 1632 |
| Bsp119I | TTCGAA | 2 cut(s) | 317, 1590 |
| Bsp1286I | GDGCHC | 5 cut(s) | 145, 558, 566, 931, 1546 |
| Bsp143I | GATC | 2 cut(s) | 188, 384 |
| BspANI | GGCC | 3 cut(s) | 251, 721, 1150 |
| BspCNI | CTCAG | 5 cut(s) | 42, 205, 273, 835, 1144 |
| BspLI | GGNNCC | 5 cut(s) | 294, 758, 817, 831, 1630 |
| BspMAI | CTGCAG | 2 cut(s) | 462, 1048 |
| BspPI | GGATC | 1 cut(s) | 196 |
| BspT104I | TTCGAA | 2 cut(s) | 317, 1590 |
| BspT107I | GGYRCC | 1 cut(s) | 815 |
| BspTNI | GGTCTC | 1 cut(s) | 1568 |
| BsrDI | GCAATG | 2 cut(s) | 96, 591 |
| BsrFI | RCCGGY | 4 cut(s) | 79, 389, 812, 913 |
| BsrI | ACTGG | 3 cut(s) | 790, 894, 1549 |
| BssAI | RCCGGY | 4 cut(s) | 79, 389, 812, 913 |
| BssMI | GATC | 2 cut(s) | 188, 384 |
| BssNI | GRCGYC | 1 cut(s) | 17 |
| Bst2UI | CCWGG | 1 cut(s) | 248 |
| Bst4CI | ACNGT | 2 cut(s) | 612, 962 |
| Bst6I | CTCTTC | 2 cut(s) | 1442, 1515 |
| BstACI | GRCGYC | 1 cut(s) | 17 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 512 |
| BstBI | TTCGAA | 2 cut(s) | 317, 1590 |
| BstC8I | GCNNGC | 6 cut(s) | 161, 399, 1041, 1416, 1526, 1648 |
| BstDEI | CTNAG | 8 cut(s) | 29, 192, 281, 695, 822, 976, 1152, 1621 |
| BstF5I | GGATG | 4 cut(s) | 708, 1063, 1243, 1386 |
| BstH2I | RGCGCY | 1 cut(s) | 416 |
| BstHHI | GCGC | 1 cut(s) | 415 |
| BstKTI | GATC | 2 cut(s) | 191, 387 |
| BstMAI | GTCTC | 4 cut(s) | 9, 706, 900, 1568 |
| BstMBI | GATC | 2 cut(s) | 188, 384 |
| BstNI | CCWGG | 1 cut(s) | 248 |
| BstNSI | RCATGY | 1 cut(s) | 1528 |
| BstSCI | CCNGG | 3 cut(s) | 246, 716, 1612 |
| BstSFI | CTRYAG | 2 cut(s) | 458, 1044 |
| BstSLI | GKGCMC | 1 cut(s) | 931 |
| BstV2I | GAAGAC | 1 cut(s) | 330 |
| BstX2I | RGATCY | 1 cut(s) | 188 |
| BstXI | CCANNNNNNTGG | 4 cut(s) | 684, 1377, 1429, 1556 |
| BstYI | RGATCY | 1 cut(s) | 188 |
| BsuRI | GGCC | 3 cut(s) | 251, 721, 1150 |
| BtsCI | GGATG | 4 cut(s) | 708, 1063, 1243, 1386 |
| BtsIMutI | CAGTG | 2 cut(s) | 887, 1242 |
| Cac8I | GCNNGC | 6 cut(s) | 161, 399, 1041, 1416, 1526, 1648 |
| CfoI | GCGC | 1 cut(s) | 415 |
| Cfr10I | RCCGGY | 4 cut(s) | 79, 389, 812, 913 |
| Cfr13I | GGNCC | 2 cut(s) | 719, 756 |
| CseI | GACGC | 1 cut(s) | 25 |
| Csp6I | GTAC | 4 cut(s) | 132, 620, 816, 1610 |
| CspAI | ACCGGT | 1 cut(s) | 913 |
| CviAII | CATG | 6 cut(s) | 335, 1171, 1254, 1423, 1444, 1525 |
| CviQI | GTAC | 4 cut(s) | 132, 620, 816, 1610 |
| DdeI | CTNAG | 8 cut(s) | 29, 192, 281, 695, 822, 976, 1152, 1621 |
| DpnI | GATC | 2 cut(s) | 190, 386 |
| DpnII | GATC | 2 cut(s) | 188, 384 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 19 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 19 |
| Eam1104I | CTCTTC | 2 cut(s) | 1442, 1515 |
| EarI | CTCTTC | 2 cut(s) | 1442, 1515 |
| EciI | GGCGGA | 2 cut(s) | 437, 694 |
| Eco24I | GRGCYC | 3 cut(s) | 145, 566, 1546 |
| Eco31I | GGTCTC | 1 cut(s) | 1568 |
| Eco47I | GGWCC | 1 cut(s) | 756 |
| Eco57I | CTGAAG | 4 cut(s) | 21, 437, 522, 1502 |
| Eco88I | CYCGRG | 2 cut(s) | 265, 1632 |
| EcoRI | GAATTC | 2 cut(s) | 112, 1480 |
| EcoRII | CCWGG | 1 cut(s) | 246 |
| EcoT22I | ATGCAT | 1 cut(s) | 1530 |
| EcoT38I | GRGCYC | 3 cut(s) | 145, 566, 1546 |
| FaeI | CATG | 6 cut(s) | 338, 1174, 1257, 1426, 1447, 1528 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1494, 1526 |
| FaqI | GGGAC | 2 cut(s) | 85, 742 |
| FatI | CATG | 6 cut(s) | 334, 1170, 1253, 1422, 1443, 1524 |
| FauI | CCCGC | 5 cut(s) | 390, 780, 786, 792, 1407 |
| FokI | GGATG | 4 cut(s) | 695, 1070, 1250, 1393 |
| FriOI | GRGCYC | 3 cut(s) | 145, 566, 1546 |
| FspBI | CTAG | 1 cut(s) | 924 |
| GlaI | GCGC | 1 cut(s) | 414 |
| GsuI | CTGGAG | 4 cut(s) | 566, 816, 911, 1578 |
| HaeII | RGCGCY | 1 cut(s) | 416 |
| HaeIII | GGCC | 3 cut(s) | 251, 721, 1150 |
| HapII | CCGG | 7 cut(s) | 80, 164, 390, 717, 813, 914, 1614 |
| HgaI | GACGC | 1 cut(s) | 25 |
| HhaI | GCGC | 1 cut(s) | 415 |
| Hin1I | GRCGYC | 1 cut(s) | 17 |
| Hin1II | CATG | 6 cut(s) | 338, 1174, 1257, 1426, 1447, 1528 |
| Hin6I | GCGC | 1 cut(s) | 413 |
| HinP1I | GCGC | 1 cut(s) | 413 |
| HindIII | AAGCTT | 1 cut(s) | 362 |
| HpaII | CCGG | 7 cut(s) | 80, 164, 390, 717, 813, 914, 1614 |
| HphI | GGTGA | 2 cut(s) | 145, 1538 |
| Hpy166II | GTNNAC | 2 cut(s) | 929, 1199 |
| Hpy8I | GTNNAC | 2 cut(s) | 929, 1199 |
| Hpy99I | CGWCG | 1 cut(s) | 19 |
| HpyAV | CCTTC | 4 cut(s) | 214, 412, 532, 820 |
| HpyCH4III | ACNGT | 2 cut(s) | 612, 962 |
| HpyCH4IV | ACGT | 2 cut(s) | 450, 1457 |
| HpyCH4V | TGCA | 9 cut(s) | 74, 355, 460, 515, 929, 1046, 1184, 1259, 1528 |
| HpyF3I | CTNAG | 8 cut(s) | 29, 192, 281, 695, 822, 976, 1152, 1621 |
| HpySE526I | ACGT | 2 cut(s) | 450, 1457 |
| Hsp92I | GRCGYC | 1 cut(s) | 17 |
| Hsp92II | CATG | 6 cut(s) | 338, 1174, 1257, 1426, 1447, 1528 |
| HspAI | GCGC | 1 cut(s) | 413 |
| KpnI | GGTACC | 1 cut(s) | 819 |
| Kzo9I | GATC | 2 cut(s) | 188, 384 |
| LmnI | GCTCC | 6 cut(s) | 175, 424, 454, 835, 1300, 1462 |
| LweI | GCATC | 2 cut(s) | 1156, 1371 |
| MaeI | CTAG | 1 cut(s) | 924 |
| MaeII | ACGT | 2 cut(s) | 450, 1457 |
| MaeIII | GTNAC | 2 cut(s) | 1229, 1453 |
| MalI | GATC | 2 cut(s) | 190, 386 |
| MboI | GATC | 2 cut(s) | 188, 384 |
| MfeI | CAATTG | 1 cut(s) | 1185 |
| MflI | RGATCY | 1 cut(s) | 188 |
| MhlI | GDGCHC | 5 cut(s) | 145, 558, 566, 931, 1546 |
| MlyI | GAGTC | 5 cut(s) | 68, 430, 708, 902, 1562 |
| MmeI | TCCRAC | 4 cut(s) | 212, 925, 1278, 1440 |
| Mph1103I | ATGCAT | 1 cut(s) | 1530 |
| MroXI | GAANNNNTTC | 4 cut(s) | 313, 849, 1473, 1509 |
| MseI | TTAA | 6 cut(s) | 447, 605, 1133, 1203, 1319, 1323 |
| MslI | CAYNNNNRTG | 1 cut(s) | 682 |
| MspA1I | CMGCKG | 3 cut(s) | 274, 500, 1262 |
| MspI | CCGG | 7 cut(s) | 80, 164, 390, 717, 813, 914, 1614 |
| MspR9I | CCNGG | 3 cut(s) | 248, 718, 1614 |
| MunI | CAATTG | 1 cut(s) | 1185 |
| MvaI | CCWGG | 1 cut(s) | 248 |
| NciI | CCSGG | 2 cut(s) | 718, 1614 |
| NdeII | GATC | 2 cut(s) | 188, 384 |
| NlaIII | CATG | 6 cut(s) | 338, 1174, 1257, 1426, 1447, 1528 |
| NlaIV | GGNNCC | 5 cut(s) | 294, 758, 817, 831, 1630 |
| NmeAIII | GCCGAG | 1 cut(s) | 280 |
| NmuCI | GTSAC | 1 cut(s) | 1453 |
| NsiI | ATGCAT | 1 cut(s) | 1530 |
| NspI | RCATGY | 1 cut(s) | 1528 |
| NspV | TTCGAA | 2 cut(s) | 317, 1590 |
| PacI | TTAATTAA | 1 cut(s) | 1323 |
| PaeI | GCATGC | 1 cut(s) | 1528 |
| PaeR7I | CTCGAG | 1 cut(s) | 265 |
| PdmI | GAANNNNTTC | 4 cut(s) | 313, 849, 1473, 1509 |
| PfeI | GAWTC | 8 cut(s) | 167, 314, 487, 884, 1388, 1426, 1469, 1505 |
| PflFI | GACNNNGTC | 1 cut(s) | 19 |
| PinAI | ACCGGT | 1 cut(s) | 913 |
| PleI | GAGTC | 5 cut(s) | 67, 430, 707, 901, 1562 |
| PpsI | GAGTC | 5 cut(s) | 67, 430, 707, 901, 1562 |
| Psp6I | CCWGG | 1 cut(s) | 246 |
| PspGI | CCWGG | 1 cut(s) | 246 |
| PspN4I | GGNNCC | 5 cut(s) | 294, 758, 817, 831, 1630 |
| PspPI | GGNCC | 2 cut(s) | 719, 756 |
| PspXI | VCTCGAGB | 1 cut(s) | 265 |
| PstI | CTGCAG | 2 cut(s) | 462, 1048 |
| PsuI | RGATCY | 1 cut(s) | 188 |
| PsyI | GACNNNGTC | 1 cut(s) | 19 |
| PvuII | CAGCTG | 1 cut(s) | 1262 |
| RsaI | GTAC | 4 cut(s) | 133, 621, 817, 1611 |
| RsaNI | GTAC | 4 cut(s) | 132, 620, 816, 1610 |
| RseI | CAYNNNNRTG | 1 cut(s) | 682 |
| SaqAI | TTAA | 6 cut(s) | 447, 605, 1133, 1203, 1319, 1323 |
| Sau3AI | GATC | 2 cut(s) | 188, 384 |
| Sau96I | GGNCC | 2 cut(s) | 719, 756 |
| SchI | GAGTC | 5 cut(s) | 68, 430, 708, 902, 1562 |
| ScrFI | CCNGG | 3 cut(s) | 248, 718, 1614 |
| SduI | GDGCHC | 5 cut(s) | 145, 558, 566, 931, 1546 |
| SfaNI | GCATC | 2 cut(s) | 1156, 1371 |
| SfcI | CTRYAG | 2 cut(s) | 458, 1044 |
| Sfr274I | CTCGAG | 1 cut(s) | 265 |
| SfuI | TTCGAA | 2 cut(s) | 317, 1590 |
| SinI | GGWCC | 1 cut(s) | 756 |
| SlaI | CTCGAG | 1 cut(s) | 265 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 682 |
| SmlI | CTYRAG | 3 cut(s) | 209, 265, 365 |
| SmoI | CTYRAG | 3 cut(s) | 209, 265, 365 |
| SpeI | ACTAGT | 1 cut(s) | 923 |
| SphI | GCATGC | 1 cut(s) | 1528 |
| SspI | AATATT | 1 cut(s) | 1438 |
| SspMI | CTAG | 1 cut(s) | 924 |
| StyD4I | CCNGG | 3 cut(s) | 246, 716, 1612 |
| TaaI | ACNGT | 2 cut(s) | 612, 962 |
| TaiI | ACGT | 2 cut(s) | 453, 1460 |
| TaqI | TCGA | 7 cut(s) | 266, 317, 898, 1083, 1386, 1566, 1590 |
| TaqII | GACCGA | 1 cut(s) | 744 |
| TatI | WGTACW | 1 cut(s) | 619 |
| TauI | GCSGC | 6 cut(s) | 254, 277, 280, 413, 497, 500 |
| TfiI | GAWTC | 8 cut(s) | 167, 314, 487, 884, 1388, 1426, 1469, 1505 |
| Tru1I | TTAA | 6 cut(s) | 447, 605, 1133, 1203, 1319, 1323 |
| Tru9I | TTAA | 6 cut(s) | 447, 605, 1133, 1203, 1319, 1323 |
| TscAI | CASTG | 2 cut(s) | 894, 1249 |
| TseFI | GTSAC | 1 cut(s) | 1453 |
| Tsp45I | GTSAC | 1 cut(s) | 1453 |
| TspDTI | ATGAA | 7 cut(s) | 336, 654, 1003, 1095, 1134, 1439, 1460 |
| TspGWI | ACGGA | 1 cut(s) | 1070 |
| TspRI | CASTG | 2 cut(s) | 894, 1249 |
| Tth111I | GACNNNGTC | 1 cut(s) | 19 |
| VneI | GTGCAC | 1 cut(s) | 927 |
| VpaK11BI | GGWCC | 1 cut(s) | 756 |
| XapI | RAATTY | 5 cut(s) | 112, 569, 951, 1076, 1480 |
| XceI | RCATGY | 1 cut(s) | 1528 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 681 |
| XhoI | CTCGAG | 1 cut(s) | 265 |
| XmnI | GAANNNNTTC | 4 cut(s) | 313, 849, 1473, 1509 |
| XspI | CTAG | 1 cut(s) | 924 |
| Zsp2I | ATGCAT | 1 cut(s) | 1530 |