pycom13g12060

Protein CHUP1, chloroplastic-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Reverse (-)
8338615 .. 8341959
3345 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g12060.4

Sequence Viewer

Length: 1665 bp
ATGTCTCACCAGACGACGCCGTCTTATCTCAGAGCTTCGGCTGCTTCCAGAGCAAAGGAGTCGCCGACTGCTGCAAGACCGGCAAGAGCAATGTCGGTGTCCCCAGATGTGAATTCAGAGAGTTTGAGGAGTACCATGAAGGCTCTCCTGCTCACCAGCAAGCCGGAATCTGGGGAGTTTGTGTTGGCATCTCAGAAAAGCAAGGAACTTGAGGAGAATAAGGTTGTGGGTCGGATTGGAAACCGCCAGGCCGCCGAGCAGTCCTCGAGGCCGCGGCGGCTGAGGGCGGTGGAACCCAATTCCAAGAGAAATGATTCGAATGAAGACGACCCACATGGGAAAAACAGAGAATTGCAGGAAAAGCTTGAGATGAGTGAGAGTTTGATCGCCCGTTTGCGGGCTGAGGTGGCGGCGCTGAAGGCGGAGCTGGATAAGACTCAGGGTTTTAACGCGGAGCTGCAGTCGCAGAACAAAAACCTCTCTCGGAATCTCGCCGCCGCTGAAGCAAAAATTGCAGCTTTTGCCACTCCTGAACAGAGGGAGAAAAATGGAGAGCACCAGAGCCCTAAATTCAAAGACCTCCAGAAACTCATTGCCAACAAATTAAAACGGTCAGTAGTAAAGAAAGAGGCAGTCAATGAAACAAGTCCTCCTATTAAAGCACCACCTACTCCACCACCAAAATGGGCAGTTCTTAGAGTCTCCGCCATCCAATCCGGGCCACCACCACCACCTCCGCTACCACCATCACTTCGGTCCCCACACCCAGCCCCACCCCCACCCCCGCCCCAGTCCTCAGTGAGAGCAACTGCCGGTACCACTCAGAAGGCTCCAGCACTTGTAGAATTATTTCACTCATTGAGGAAGCAAGAGGTGAAGAGGGATTCACTGGAGTCTCGAAACCATCATAAACCGGTGGCTACTAGTGCACATAATAGCATTGTCGGAGAAATTCAAAACCGTTCAGCACATCTCTTAGCTATAAAAGCAGATGTTCAAACAAAAGGAGAGTTCATCAATGACCTTATCCAGAAAGTGCTGGCTGCAGCATATACGGATGTAGAAGATGTCCTAAAATTTATCGATTGGCTTGATGTTGAACTCTCATCTTTGGCTGATGAACGGGCTGTCTTAAAGCATTTCAAATGGCCTGAGAGGAAAGCTGATGCCATGCGAGAAGCTGCAATTGAATATCGTGAACTTAAACTGCTGGAAAGTGAGATTTATTGTTATAAGGATGACACTGACATTCCATGTGCAGCTGCCTTGAAGAAGATGGCTGCCTTATTGGACAAGTCGGAGCGAAGCATACAAAGGTTAATTAAGTTAAGAAGTTCTGTTATGCGTTCTTATCAGGAATTGAAAATCCCAACTGATTGGATGCTCGATTCTGGGATTGTCAGTAAGATAAAGCGGGCTTCCATGAATCTGGCTAATATTTACATGAAGAGAGTGACGTTGGAGCTTGAATCCATTCGAAATTCAGATAGACAATCAAGTCAAGAATCTCTTCTGCTTCAGGGCATGCATTTCGCATATAGGGCTCACCAGTTTGCTGGAGGTCTTGACTCCGAAACATTATGTGCTTTCGAAGAAATAAGGCAGCGAGTACCCGGACACTTAGGAGGTTCCCGAGAGCTATTGGCAGGCATAGCATCTTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

555

Amino Acids

61.47

Weight (kDa)

9.5

Isoelectric Point (pI)

61.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1233
AasI GACNNNNNNGTC 2 cut(s) 19, 1497
AbsI CCTCGAGG 1 cut(s) 265
Acc65I GGTACC 1 cut(s) 815
AccB1I GGYRCC 1 cut(s) 815
AccII CGCG 2 cut(s) 274, 452
AcsI RAATTY 5 cut(s) 112, 569, 951, 1076, 1480
AcuI CTGAAG 3 cut(s) 437, 522, 1502
AcyI GRCGYC 1 cut(s) 17
AfaI GTAC 3 cut(s) 133, 817, 1611
AfiI CCNNNNNNNGG 3 cut(s) 170, 396, 397
AgeI ACCGGT 1 cut(s) 913
AgsI TTSAA 9 cut(s) 574, 956, 998, 1100, 1144, 1190, 1270, 1363, 1469
AhlI ACTAGT 1 cut(s) 923
AjnI CCWGG 1 cut(s) 246
Alw21I GWGCWC 2 cut(s) 558, 931
Alw26I GTCTC 3 cut(s) 9, 706, 900
Alw44I GTGCAC 1 cut(s) 927
Ama87I CYCGRG 2 cut(s) 265, 1632
AoxI GGCC 4 cut(s) 249, 269, 719, 1148
ApaLI GTGCAC 1 cut(s) 927
ApoI RAATTY 5 cut(s) 112, 569, 951, 1076, 1480
AsiGI ACCGGT 1 cut(s) 913
Asp700I GAANNNNTTC 4 cut(s) 313, 849, 1473, 1509
Asp718I GGTACC 1 cut(s) 815
AspLEI GCGC 1 cut(s) 415
AspS9I GGNCC 2 cut(s) 719, 756
AsuC2I CCSGG 2 cut(s) 718, 1614
AsuHPI GGTGA 3 cut(s) 145, 886, 1538
AsuII TTCGAA 3 cut(s) 317, 1477, 1590
AvaI CYCGRG 2 cut(s) 265, 1632
AvaII GGWCC 1 cut(s) 756
BaeGI GKGCMC 1 cut(s) 931
BanI GGYRCC 1 cut(s) 815
BanII GRGCYC 2 cut(s) 566, 1546
BbsI GAAGAC 1 cut(s) 330
Bbv12I GWGCWC 2 cut(s) 558, 931
BbvCI CCTCAGC 2 cut(s) 281, 402
BccI CCATC 4 cut(s) 716, 754, 912, 1270
BceAI ACGGC 1 cut(s) 4
BcgI CGANNNNNNTGC 4 cut(s) 42, 76, 1513, 1547
BciT130I CCWGG 1 cut(s) 248
BcnI CCSGG 2 cut(s) 718, 1614
BcoDI GTCTC 3 cut(s) 9, 706, 900
BcuI ACTAGT 1 cut(s) 923
BfaI CTAG 1 cut(s) 924
BfmI CTRYAG 2 cut(s) 458, 1044
BfoI RGCGCY 1 cut(s) 416
BglI GCCNNNNNGGC 1 cut(s) 277
Bme1390I CCNGG 3 cut(s) 248, 718, 1614
Bme18I GGWCC 1 cut(s) 756
BmeT110I CYCGRG 2 cut(s) 265, 1632
BmgT120I GGNCC 2 cut(s) 719, 756
BmiI GGNNCC 5 cut(s) 294, 758, 817, 831, 1630
BmrFI CCNGG 3 cut(s) 248, 718, 1614
BmrI ACTGGG 1 cut(s) 784
BmsI GCATC 3 cut(s) 197, 1156, 1371
BmuI ACTGGG 1 cut(s) 784
BpiI GAAGAC 1 cut(s) 330
BplI GAGNNNNNCTC 2 cut(s) 248, 280
BpmI CTGGAG 4 cut(s) 566, 816, 911, 1578
Bpu10I CCTNAGC 2 cut(s) 281, 402
Bpu14I TTCGAA 3 cut(s) 317, 1477, 1590
BpuEI CTTGAG 2 cut(s) 230, 386
BpuMI CCSGG 2 cut(s) 718, 1614
Bsa29I ATCGAT 1 cut(s) 1083
BsaHI GRCGYC 1 cut(s) 17
BsaJI CCNNGG 1 cut(s) 272
BsaWI WCCGGW 1 cut(s) 913
BsaXI ACNNNNNCTCC 6 cut(s) 167, 197, 446, 476, 634, 664
Bsc4I CCNNNNNNNGG 3 cut(s) 170, 396, 397
Bse118I RCCGGY 3 cut(s) 79, 812, 913
Bse1I ACTGG 3 cut(s) 790, 894, 1549
Bse3DI GCAATG 2 cut(s) 96, 591
BseBI CCWGG 1 cut(s) 248
BseCI ATCGAT 1 cut(s) 1083
BseDI CCNNGG 1 cut(s) 272
BseGI GGATG 4 cut(s) 708, 1063, 1243, 1386
BseLI CCNNNNNNNGG 3 cut(s) 170, 396, 397
BseMI GCAATG 2 cut(s) 96, 591
BseMII CTCAG 8 cut(s) 43, 206, 272, 393, 452, 810, 836, 1143
BseNI ACTGG 3 cut(s) 790, 894, 1549
BseRI GAGGAG 2 cut(s) 142, 227
BseSI GKGCMC 1 cut(s) 931
BseYI CCCAGC 1 cut(s) 766
BsgI GTGCAG 1 cut(s) 1278
Bsh1236I CGCG 2 cut(s) 274, 452
BshFI GGCC 4 cut(s) 251, 271, 721, 1150
BshNI GGYRCC 1 cut(s) 815
BshTI ACCGGT 1 cut(s) 913
BshVI ATCGAT 1 cut(s) 1083
BsiHKAI GWGCWC 2 cut(s) 558, 931
BsiHKCI CYCGRG 2 cut(s) 265, 1632
BsiSI CCGG 6 cut(s) 80, 164, 717, 813, 914, 1614
BslFI GGGAC 2 cut(s) 85, 742
BslI CCNNNNNNNGG 3 cut(s) 170, 396, 397
BsmAI GTCTC 3 cut(s) 9, 706, 900
BsmFI GGGAC 2 cut(s) 85, 742
BsnI GGCC 4 cut(s) 251, 271, 721, 1150
BsoBI CYCGRG 2 cut(s) 265, 1632
Bsp119I TTCGAA 3 cut(s) 317, 1477, 1590
Bsp1286I GDGCHC 4 cut(s) 558, 566, 931, 1546
Bsp143I GATC 1 cut(s) 384
BspANI GGCC 4 cut(s) 251, 271, 721, 1150
BspCNI CTCAG 8 cut(s) 42, 205, 273, 394, 451, 809, 835, 1144
BspDI ATCGAT 1 cut(s) 1083
BspFNI CGCG 2 cut(s) 274, 452
BspLI GGNNCC 5 cut(s) 294, 758, 817, 831, 1630
BspMAI CTGCAG 2 cut(s) 462, 1048
BspT104I TTCGAA 3 cut(s) 317, 1477, 1590
BspT107I GGYRCC 1 cut(s) 815
BsrDI GCAATG 2 cut(s) 96, 591
BsrFI RCCGGY 3 cut(s) 79, 812, 913
BsrI ACTGG 3 cut(s) 790, 894, 1549
BssAI RCCGGY 3 cut(s) 79, 812, 913
BssECI CCNNGG 1 cut(s) 272
BssMI GATC 1 cut(s) 384
BssNI GRCGYC 1 cut(s) 17
Bst2UI CCWGG 1 cut(s) 248
Bst4CI ACNGT 2 cut(s) 612, 962
Bst6I CTCTTC 3 cut(s) 872, 1442, 1515
BstACI GRCGYC 1 cut(s) 17
BstAPI GCANNNNNTGC 2 cut(s) 512, 521
BstBI TTCGAA 3 cut(s) 317, 1477, 1590
BstC8I GCNNGC 6 cut(s) 161, 399, 1041, 1416, 1526, 1648
BstDSI CCRYGG 1 cut(s) 272
BstF5I GGATG 4 cut(s) 708, 1063, 1243, 1386
BstFNI CGCG 2 cut(s) 274, 452
BstH2I RGCGCY 1 cut(s) 416
BstHHI GCGC 1 cut(s) 415
BstKTI GATC 1 cut(s) 387
BstMAI GTCTC 3 cut(s) 9, 706, 900
BstMBI GATC 1 cut(s) 384
BstNI CCWGG 1 cut(s) 248
BstNSI RCATGY 1 cut(s) 1528
BstSCI CCNGG 3 cut(s) 246, 716, 1612
BstSFI CTRYAG 2 cut(s) 458, 1044
BstSLI GKGCMC 1 cut(s) 931
BstUI CGCG 2 cut(s) 274, 452
BstV2I GAAGAC 1 cut(s) 330
BstXI CCANNNNNNTGG 4 cut(s) 684, 1377, 1429, 1556
Bsu15I ATCGAT 1 cut(s) 1083
BsuRI GGCC 4 cut(s) 251, 271, 721, 1150
BsuTUI ATCGAT 1 cut(s) 1083
BtgI CCRYGG 1 cut(s) 272
BtsCI GGATG 4 cut(s) 708, 1063, 1243, 1386
BtsIMutI CAGTG 3 cut(s) 804, 887, 1242
Cac8I GCNNGC 6 cut(s) 161, 399, 1041, 1416, 1526, 1648
CfoI GCGC 1 cut(s) 415
Cfr10I RCCGGY 3 cut(s) 79, 812, 913
Cfr13I GGNCC 2 cut(s) 719, 756
Cfr42I CCGCGG 1 cut(s) 275
ClaI ATCGAT 1 cut(s) 1083
CseI GACGC 1 cut(s) 25
Csp6I GTAC 3 cut(s) 132, 816, 1610
CspAI ACCGGT 1 cut(s) 913
CviAII CATG 7 cut(s) 136, 335, 1171, 1254, 1423, 1444, 1525
CviQI GTAC 3 cut(s) 132, 816, 1610
DpnI GATC 1 cut(s) 386
DpnII GATC 1 cut(s) 384
DrdI GACNNNNNNGTC 2 cut(s) 19, 1497
DseDI GACNNNNNNGTC 2 cut(s) 19, 1497
Eam1104I CTCTTC 3 cut(s) 872, 1442, 1515
EarI CTCTTC 3 cut(s) 872, 1442, 1515
EciI GGCGGA 2 cut(s) 437, 694
Eco24I GRGCYC 2 cut(s) 566, 1546
Eco47I GGWCC 1 cut(s) 756
Eco57I CTGAAG 3 cut(s) 437, 522, 1502
Eco88I CYCGRG 2 cut(s) 265, 1632
EcoRI GAATTC 1 cut(s) 112
EcoRII CCWGG 1 cut(s) 246
EcoT22I ATGCAT 1 cut(s) 1530
EcoT38I GRGCYC 2 cut(s) 566, 1546
FaeI CATG 7 cut(s) 139, 338, 1174, 1257, 1426, 1447, 1528
FalI AAGNNNNNCTT 2 cut(s) 1494, 1526
FaqI GGGAC 2 cut(s) 85, 742
FatI CATG 7 cut(s) 135, 334, 1170, 1253, 1422, 1443, 1524
FauI CCCGC 3 cut(s) 390, 792, 1407
FokI GGATG 4 cut(s) 695, 1070, 1250, 1393
FriOI GRGCYC 2 cut(s) 566, 1546
FspBI CTAG 1 cut(s) 924
GlaI GCGC 1 cut(s) 414
GsaI CCCAGC 1 cut(s) 770
GsuI CTGGAG 4 cut(s) 566, 816, 911, 1578
HaeII RGCGCY 1 cut(s) 416
HaeIII GGCC 4 cut(s) 251, 271, 721, 1150
HapII CCGG 6 cut(s) 80, 164, 717, 813, 914, 1614
HgaI GACGC 1 cut(s) 25
HhaI GCGC 1 cut(s) 415
Hin1I GRCGYC 1 cut(s) 17
Hin1II CATG 7 cut(s) 139, 338, 1174, 1257, 1426, 1447, 1528
Hin6I GCGC 1 cut(s) 413
HinP1I GCGC 1 cut(s) 413
HindIII AAGCTT 1 cut(s) 362
HpaII CCGG 6 cut(s) 80, 164, 717, 813, 914, 1614
HphI GGTGA 3 cut(s) 145, 886, 1538
Hpy166II GTNNAC 2 cut(s) 929, 1199
Hpy8I GTNNAC 2 cut(s) 929, 1199
Hpy99I CGWCG 1 cut(s) 19
HpyAV CCTTC 3 cut(s) 133, 412, 820
HpyCH4III ACNGT 2 cut(s) 612, 962
HpyCH4IV ACGT 1 cut(s) 1457
HpyCH4V TGCA 9 cut(s) 74, 355, 460, 515, 929, 1046, 1184, 1259, 1528
HpySE526I ACGT 1 cut(s) 1457
Hsp92I GRCGYC 1 cut(s) 17
Hsp92II CATG 7 cut(s) 139, 338, 1174, 1257, 1426, 1447, 1528
HspAI GCGC 1 cut(s) 413
KpnI GGTACC 1 cut(s) 819
KspI CCGCGG 1 cut(s) 275
Kzo9I GATC 1 cut(s) 384
LmnI GCTCC 5 cut(s) 424, 454, 835, 1300, 1462
LweI GCATC 3 cut(s) 197, 1156, 1371
MaeI CTAG 1 cut(s) 924
MaeII ACGT 1 cut(s) 1457
MaeIII GTNAC 1 cut(s) 1453
MalI GATC 1 cut(s) 386
MboI GATC 1 cut(s) 384
MboII GAAGA 9 cut(s) 335, 889, 1076, 1282, 1285, 1459, 1502, 1604, 1650
MfeI CAATTG 1 cut(s) 1185
MhlI GDGCHC 4 cut(s) 558, 566, 931, 1546
MlyI GAGTC 5 cut(s) 68, 430, 708, 902, 1562
MmeI TCCRAC 4 cut(s) 212, 925, 1278, 1440
Mph1103I ATGCAT 1 cut(s) 1530
MroXI GAANNNNTTC 4 cut(s) 313, 849, 1473, 1509
MseI TTAA 8 cut(s) 447, 605, 657, 1133, 1203, 1319, 1323, 1328
MslI CAYNNNNRTG 1 cut(s) 682
MspA1I CMGCKG 3 cut(s) 274, 500, 1262
MspI CCGG 6 cut(s) 80, 164, 717, 813, 914, 1614
MspR9I CCNGG 3 cut(s) 248, 718, 1614
MunI CAATTG 1 cut(s) 1185
MvaI CCWGG 1 cut(s) 248
MvnI CGCG 2 cut(s) 274, 452
NciI CCSGG 2 cut(s) 718, 1614
NdeII GATC 1 cut(s) 384
NlaIII CATG 7 cut(s) 139, 338, 1174, 1257, 1426, 1447, 1528
NlaIV GGNNCC 5 cut(s) 294, 758, 817, 831, 1630
NmeAIII GCCGAG 1 cut(s) 280
NmuCI GTSAC 1 cut(s) 1453
NsiI ATGCAT 1 cut(s) 1530
NspI RCATGY 1 cut(s) 1528
NspV TTCGAA 3 cut(s) 317, 1477, 1590
PacI TTAATTAA 1 cut(s) 1323
PaeI GCATGC 1 cut(s) 1528
PaeR7I CTCGAG 1 cut(s) 265
PdmI GAANNNNTTC 4 cut(s) 313, 849, 1473, 1509
PfeI GAWTC 8 cut(s) 167, 314, 487, 884, 1388, 1426, 1469, 1505
PflFI GACNNNGTC 1 cut(s) 19
PinAI ACCGGT 1 cut(s) 913
PleI GAGTC 5 cut(s) 67, 430, 707, 901, 1562
PpsI GAGTC 5 cut(s) 67, 430, 707, 901, 1562
PsiI TTATAA 1 cut(s) 1233
Psp6I CCWGG 1 cut(s) 246
PspFI CCCAGC 1 cut(s) 766
PspGI CCWGG 1 cut(s) 246
PspN4I GGNNCC 5 cut(s) 294, 758, 817, 831, 1630
PspPI GGNCC 2 cut(s) 719, 756
PspXI VCTCGAGB 1 cut(s) 265
PstI CTGCAG 2 cut(s) 462, 1048
PsyI GACNNNGTC 1 cut(s) 19
PvuII CAGCTG 1 cut(s) 1262
RsaI GTAC 3 cut(s) 133, 817, 1611
RsaNI GTAC 3 cut(s) 132, 816, 1610
RseI CAYNNNNRTG 1 cut(s) 682
SacII CCGCGG 1 cut(s) 275
SaqAI TTAA 8 cut(s) 447, 605, 657, 1133, 1203, 1319, 1323, 1328
Sau3AI GATC 1 cut(s) 384
Sau96I GGNCC 2 cut(s) 719, 756
SchI GAGTC 5 cut(s) 68, 430, 708, 902, 1562
ScrFI CCNGG 3 cut(s) 248, 718, 1614
SduI GDGCHC 4 cut(s) 558, 566, 931, 1546
SfaNI GCATC 3 cut(s) 197, 1156, 1371
SfcI CTRYAG 2 cut(s) 458, 1044
Sfr274I CTCGAG 1 cut(s) 265
Sfr303I CCGCGG 1 cut(s) 275
SfuI TTCGAA 3 cut(s) 317, 1477, 1590
SgrBI CCGCGG 1 cut(s) 275
SinI GGWCC 1 cut(s) 756
SlaI CTCGAG 1 cut(s) 265
SmiMI CAYNNNNRTG 1 cut(s) 682
SmlI CTYRAG 3 cut(s) 209, 265, 365
SmoI CTYRAG 3 cut(s) 209, 265, 365
SpeI ACTAGT 1 cut(s) 923
SphI GCATGC 1 cut(s) 1528
SspI AATATT 1 cut(s) 1438
SspMI CTAG 1 cut(s) 924
StyD4I CCNGG 3 cut(s) 246, 716, 1612
TaaI ACNGT 2 cut(s) 612, 962
TaiI ACGT 1 cut(s) 1460
TaqI TCGA 7 cut(s) 266, 317, 898, 1083, 1386, 1477, 1590
TaqII GACCGA 1 cut(s) 744
TauI GCSGC 7 cut(s) 254, 274, 277, 280, 413, 497, 500
TfiI GAWTC 8 cut(s) 167, 314, 487, 884, 1388, 1426, 1469, 1505
Tru1I TTAA 8 cut(s) 447, 605, 657, 1133, 1203, 1319, 1323, 1328
Tru9I TTAA 8 cut(s) 447, 605, 657, 1133, 1203, 1319, 1323, 1328
TscAI CASTG 3 cut(s) 804, 894, 1249
TseFI GTSAC 1 cut(s) 1453
Tsp45I GTSAC 1 cut(s) 1453
TspDTI ATGAA 7 cut(s) 152, 336, 654, 1003, 1134, 1439, 1460
TspGWI ACGGA 1 cut(s) 1070
TspRI CASTG 3 cut(s) 804, 894, 1249
Tth111I GACNNNGTC 1 cut(s) 19
VneI GTGCAC 1 cut(s) 927
VpaK11BI GGWCC 1 cut(s) 756
XapI RAATTY 5 cut(s) 112, 569, 951, 1076, 1480
XceI RCATGY 1 cut(s) 1528
XcmI CCANNNNNNNNNTGG 1 cut(s) 681
XhoI CTCGAG 1 cut(s) 265
XmnI GAANNNNTTC 4 cut(s) 313, 849, 1473, 1509
XspI CTAG 1 cut(s) 924
Zsp2I ATGCAT 1 cut(s) 1530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.