Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005308

Physical Location & Seq

Genomic Coordinates Reverse (-)

8270741 .. 8277530

Gene Structure 6790 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G103700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1695 bp

ATGAAGCAAGGGACGCCACCATCTTCAACAAAGAGTGAAAGCAAAGTTTCTGGTAATATGTCACAGCCAACACCACCATCTTATCTCAGAGCTTCAGCTTCTTCCAAAGCAAAGGAGTCTCCGAGTCCAAGGCCATCAAGAGCAAAGTCAGTCTCCCCAGATGTGAATTGTGACAATTCCAGGAGCATTAGAAGGTCTCTTTTGCTCAACAAGCCTAAATCTGGAGAGTTGGTGTTGGGATCTCAGAAAAGTAAGGAACTTGAAGAGACTAAAGCTGTGGGTAGGCCTGGAAATCGCCAGGTTGCTGAGCAATTTGCAAGGCCAAGGCCGCAGAGGCCTGCGGATCCTAATTCCAAGAGAAATGAAGAAGACCCACATGTGAAAAACAGAGAATTGCAGGAAAGACTTGACATGAGTGAGAGTTTGACCATGAATTTTCAGGCTGAGGTGTTGGCCTTGAAGGCAGAGTTGGATAAGGCTCAGGGCTTGAACGTGGAGCTGCAGTCACAGAACAAAAACCTCACTGAGAAACTTGCTGCTGCTGAAGCAAAGATAGCAGCTTTTACCACTCGTGAACAGCGGGAGACAAATGGAGAGTACCAGAGCCCTAAATTTAAAGACCTTCAGAAACTCATTGCCAACAAATTAGAACGCCCAGTAGTAAAGAAAGAGGCAGTCAAAGAAAAAAGTGCTAATAAAACACCAGCTCCAGCACCAACTGGTGCAATTCCTAGAGTTGCAGCCACCCAATCTGGGCCACCACCCCCGCCCCCACCGCCACCATCAGTTCGATCCCCGACCCCACCACCACCTCCACCTCAGCCCTCAGTGAGAACAACTACCAGTGCCACTCAGAAGGCTCCATCCCTTGTAGAATTTTTTCACTCATTAAGAAAGCAAGAGGTGAAGAGGGACTCTCCAGAATCTAGAAACCATCATAAACCATCAGCTATTAGTGCACATAATAGCATAGTTGGAGAGATTCAAAACCGTTCAGCGCATCTGTTAGCTATAAAAGCAGATGTTCAAACAAAAGGAGAGTTCATCAATGACCTTATCCAGAAGGTGCTGGTTGCAGCATATACTGATATAGAAGATGTCCTAAAATTTGTGGATTGGCTTGATGGAGAACTCTCATCCTTGGCTGATGAACGGGCTGTCTTAAAGCATTTTAAGTGGCCTGAGAGGAAAGCTGATGCCATGCGAGAAGCTGCAATTGAATATCGTGACCTTAAACTGTTGCAAAGCGAGATTTCTTCGTATAAGGATGACACTGACATTCCATGTGCAGCTGCCTTGAAGAAGATGGCTGGCTTATTAGACAAGTCGGAGCGAAGTATACAAAGGCTAATTAAGTTAAGAAACTCAGTTATGCGTTCTTATCAGGAATTGAAAATTCCAATTGATTGGATGCTTGATTCTGGGATTGTGAGTAAGATAAAGAAGGCTTCCATGAATCTGGCTAATGTTTACATGAAGAGGGTGACAATGGAGCTTGAATCCATTCGGAATTCAGATAGAGAAACAAGTCAAGAATCTCTTCTGCTTCAGGGCGTGCATTTTGTATATAGGGCTCACCAGTTTGCTGGAGGTCTGGACTCTGAAACATTATGTGCTTTTGAAGAAATAAGACAGCGAGTACCGGGACACTTGGGAGGTTCTCAAGAGCTGTTGGCAGGCATAGCATCTTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

565

Amino Acids

62.43

Weight (kDa)

9.5

Isoelectric Point (pI)

57.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48280
fragaria_vesca	FvH4_4g21640 FvH4_4g21640 FvH4_4g21640 FvH4_4g21640 FvH4_4g21640 FvH4_4g21640 FvH4_4g21640
malus_domestica	MD13G1138500.v1.1 MD16G1134400.v1.1
prunus_persica	Prupe.1G103700_v2.0.a1 Prupe.1G103700_v2.0.a1 Prupe.1G103700_v2.0.a1 Prupe.1G103700_v2.0.a1 Prupe.1G103700_v2.0.a1 Prupe.1G103700_v2.0.a1 Prupe.1G103700_v2.0.a1
pyrus_communis	pycom13g12060 pycom16g11870
rosa_chinensis	RchiOBHm_Chr4g0427871
rosa_laevigata	RLG00000007205
rosa_roxburghii	Rroxscaffold_5G00369520
rosa_rugosa	Rorug04G0220200 Rorug04G0220200
rosa_samantha	Rh4AG277100 Rh4BG282800 Rh4CG298500 Rh4DG279900
rosa_wichuraiana	Rw4G024070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1339
AciI	CCGC	5 cut(s)	329, 341, 580, 767, 776
AclWI	GGATC	4 cut(s)	247, 338, 351, 786
AcsI	RAATTY	6 cut(s)	433, 611, 875, 1106, 1395, 1510
AcuI	CTGAAG	4 cut(s)	78, 564, 608, 1532
AcyI	GRCGYC	1 cut(s)	14
AfaI	GTAC	2 cut(s)	599, 1641
AfiI	CCNNNNNNNGG	2 cut(s)	221, 753
AflIII	ACRYGT	1 cut(s)	376
AjnI	CCWGG	3 cut(s)	179, 286, 297
AjuI	GAANNNNNNNTTGG	2 cut(s)	452, 484
Alw21I	GWGCWC	1 cut(s)	961
Alw26I	GTCTC	5 cut(s)	123, 157, 201, 260, 578
Alw44I	GTGCAC	1 cut(s)	957
AlwI	GGATC	4 cut(s)	247, 338, 351, 786
AoxI	GGCC	8 cut(s)	131, 284, 320, 326, 335, 453, 755, 1178
ApaLI	GTGCAC	1 cut(s)	957
ApeKI	GCWGC	9 cut(s)	499, 536, 539, 557, 740, 1076, 1211, 1289, 1292
ApoI	RAATTY	6 cut(s)	433, 611, 875, 1106, 1395, 1510
Asp700I	GAANNNNTTC	3 cut(s)	879, 1503, 1539
AspLEI	GCGC	1 cut(s)	1000
AspS9I	GGNCC	1 cut(s)	755
AsuC2I	CCSGG	1 cut(s)	1644
AsuHPI	GGTGA	3 cut(s)	916, 1495, 1568
BaeGI	GKGCMC	1 cut(s)	961
BamHI	GGATCC	1 cut(s)	343
BanII	GRGCYC	2 cut(s)	608, 1576
BauI	CACGAG	1 cut(s)	570
BbsI	GAAGAC	1 cut(s)	375
Bbv12I	GWGCWC	1 cut(s)	961
BbvCI	CCTCAGC	2 cut(s)	444, 819
BbvI	GCAGC	9 cut(s)	486, 523, 526, 569, 752, 1088, 1198, 1279, 1301
BccI	CCATC	9 cut(s)	28, 85, 142, 790, 871, 942, 952, 1118, 1300
BciT130I	CCWGG	3 cut(s)	181, 288, 299
BcnI	CCSGG	1 cut(s)	1644
BcoDI	GTCTC	5 cut(s)	123, 157, 201, 260, 578
BfaI	CTAG	2 cut(s)	732, 927
BfmI	CTRYAG	1 cut(s)	500
BglI	GCCNNNNNGGC	2 cut(s)	334, 461
BlpI	GCTNAGC	1 cut(s)	306
Bme1390I	CCNGG	4 cut(s)	181, 288, 299, 1644
BmgT120I	GGNCC	1 cut(s)	755
BmiI	GGNNCC	2 cut(s)	345, 861
BmrFI	CCNGG	4 cut(s)	181, 288, 299, 1644
BmrI	ACTGGG	1 cut(s)	650
BmsI	GCATC	3 cut(s)	1009, 1186, 1401
BmuI	ACTGGG	1 cut(s)	650
BpiI	GAAGAC	1 cut(s)	375
BplI	GAGNNNNNCTC	2 cut(s)	901, 933
BpmI	CTGGAG	4 cut(s)	243, 693, 903, 1608
Bpu10I	CCTNAGC	3 cut(s)	444, 480, 819
Bpu1102I	GCTNAGC	1 cut(s)	306
BpuEI	CTTGAG	1 cut(s)	1647
BpuMI	CCSGG	1 cut(s)	1644
BsaHI	GRCGYC	1 cut(s)	14
BsaI	GGTCTC	1 cut(s)	201
BsaJI	CCNNGG	3 cut(s)	128, 323, 1140
BsaXI	ACNNNNNCTCC	6 cut(s)	216, 246, 488, 518, 691, 721
Bsc4I	CCNNNNNNNGG	2 cut(s)	221, 753
Bse1I	ACTGG	4 cut(s)	656, 724, 843, 1579
Bse3DI	GCAATG	1 cut(s)	633
BseBI	CCWGG	3 cut(s)	181, 288, 299
BseDI	CCNNGG	3 cut(s)	128, 323, 1140
BseGI	GGATG	4 cut(s)	863, 1136, 1273, 1416
BseLI	CCNNNNNNNGG	2 cut(s)	221, 753
BseMI	GCAATG	1 cut(s)	633
BseNI	ACTGG	4 cut(s)	656, 724, 843, 1579
BseSI	GKGCMC	1 cut(s)	961
BseXI	GCAGC	9 cut(s)	486, 523, 526, 569, 752, 1088, 1198, 1279, 1301
BsgI	GTGCAG	1 cut(s)	1308
BshFI	GGCC	8 cut(s)	133, 286, 322, 328, 337, 455, 757, 1180
BsiHKAI	GWGCWC	1 cut(s)	961
BsiSI	CCGG	1 cut(s)	1643
BslFI	GGGAC	3 cut(s)	25, 926, 1659
BslI	CCNNNNNNNGG	2 cut(s)	221, 753
BsmAI	GTCTC	5 cut(s)	123, 157, 201, 260, 578
BsmFI	GGGAC	3 cut(s)	25, 926, 1659
BsnI	GGCC	8 cut(s)	133, 286, 322, 328, 337, 455, 757, 1180
Bso31I	GGTCTC	1 cut(s)	201
Bsp1286I	GDGCHC	3 cut(s)	608, 961, 1576
Bsp143I	GATC	3 cut(s)	239, 343, 791
Bsp1720I	GCTNAGC	1 cut(s)	306
BspACI	CCGC	5 cut(s)	329, 341, 580, 767, 776
BspANI	GGCC	8 cut(s)	133, 286, 322, 328, 337, 455, 757, 1180
BspLI	GGNNCC	2 cut(s)	345, 861
BspMAI	CTGCAG	1 cut(s)	504
BspPI	GGATC	4 cut(s)	247, 338, 351, 786
BspTNI	GGTCTC	1 cut(s)	201
BsrDI	GCAATG	1 cut(s)	633
BsrI	ACTGG	4 cut(s)	656, 724, 843, 1579
BssECI	CCNNGG	3 cut(s)	128, 323, 1140
BssMI	GATC	3 cut(s)	239, 343, 791
BssNAI	GTATAC	1 cut(s)	1340
BssNI	GRCGYC	1 cut(s)	14
BssSI	CACGAG	1 cut(s)	570
BssT1I	CCWWGG	3 cut(s)	128, 323, 1140
Bst1107I	GTATAC	1 cut(s)	1340
Bst2BI	CACGAG	1 cut(s)	570
Bst2UI	CCWGG	3 cut(s)	181, 288, 299
Bst4CI	ACNGT	2 cut(s)	992, 1239
Bst6I	CTCTTC	4 cut(s)	258, 902, 1472, 1545
BstACI	GRCGYC	1 cut(s)	14
BstC8I	GCNNGC	4 cut(s)	339, 1312, 1556, 1678
BstF5I	GGATG	4 cut(s)	863, 1136, 1273, 1416
BstHHI	GCGC	1 cut(s)	1000
BstKTI	GATC	3 cut(s)	242, 346, 794
BstMAI	GTCTC	5 cut(s)	123, 157, 201, 260, 578
BstMBI	GATC	3 cut(s)	239, 343, 791
BstNI	CCWGG	3 cut(s)	181, 288, 299
BstNSI	RCATGY	1 cut(s)	380
BstSCI	CCNGG	4 cut(s)	179, 286, 297, 1642
BstSFI	CTRYAG	1 cut(s)	500
BstSLI	GKGCMC	1 cut(s)	961
BstV1I	GCAGC	9 cut(s)	486, 523, 526, 569, 752, 1088, 1198, 1279, 1301
BstV2I	GAAGAC	1 cut(s)	375
BstX2I	RGATCY	2 cut(s)	239, 343
BstXI	CCANNNNNNTGG	3 cut(s)	1407, 1459, 1586
BstYI	RGATCY	2 cut(s)	239, 343
BstZ17I	GTATAC	1 cut(s)	1340
BsuRI	GGCC	8 cut(s)	133, 286, 322, 328, 337, 455, 757, 1180
BtsCI	GGATG	4 cut(s)	863, 1136, 1273, 1416
BtsIMutI	CAGTG	4 cut(s)	522, 834, 850, 1272
Cac8I	GCNNGC	4 cut(s)	339, 1312, 1556, 1678
CfoI	GCGC	1 cut(s)	1000
Cfr13I	GGNCC	1 cut(s)	755
CseI	GACGC	1 cut(s)	22
Csp6I	GTAC	2 cut(s)	598, 1640
CviAII	CATG	7 cut(s)	377, 412, 430, 1201, 1284, 1453, 1474
CviQI	GTAC	2 cut(s)	598, 1640
DpnI	GATC	3 cut(s)	241, 345, 793
DpnII	GATC	3 cut(s)	239, 343, 791
DraI	TTTAAA	1 cut(s)	616
Eam1104I	CTCTTC	4 cut(s)	258, 902, 1472, 1545
EarI	CTCTTC	4 cut(s)	258, 902, 1472, 1545
Eco130I	CCWWGG	3 cut(s)	128, 323, 1140
Eco147I	AGGCCT	2 cut(s)	286, 337
Eco24I	GRGCYC	2 cut(s)	608, 1576
Eco31I	GGTCTC	1 cut(s)	201
Eco57I	CTGAAG	4 cut(s)	78, 564, 608, 1532
EcoRI	GAATTC	1 cut(s)	1510
EcoRII	CCWGG	3 cut(s)	179, 286, 297
EcoT14I	CCWWGG	3 cut(s)	128, 323, 1140
EcoT38I	GRGCYC	2 cut(s)	608, 1576
ErhI	CCWWGG	3 cut(s)	128, 323, 1140
FaeI	CATG	7 cut(s)	380, 415, 433, 1204, 1287, 1456, 1477
FalI	AAGNNNNNCTT	2 cut(s)	1524, 1556
FaqI	GGGAC	3 cut(s)	25, 926, 1659
FatI	CATG	7 cut(s)	376, 411, 429, 1200, 1283, 1452, 1473
FauI	CCCGC	2 cut(s)	573, 774
FblI	GTMKAC	1 cut(s)	1339
FokI	GGATG	4 cut(s)	850, 1123, 1280, 1423
FriOI	GRGCYC	2 cut(s)	608, 1576
FspBI	CTAG	2 cut(s)	732, 927
GlaI	GCGC	1 cut(s)	999
GsuI	CTGGAG	4 cut(s)	243, 693, 903, 1608
HaeIII	GGCC	8 cut(s)	133, 286, 322, 328, 337, 455, 757, 1180
HapII	CCGG	1 cut(s)	1643
HgaI	GACGC	1 cut(s)	22
HhaI	GCGC	1 cut(s)	1000
Hin1I	GRCGYC	1 cut(s)	14
Hin1II	CATG	7 cut(s)	380, 415, 433, 1204, 1287, 1456, 1477
Hin6I	GCGC	1 cut(s)	998
HinP1I	GCGC	1 cut(s)	998
HpaII	CCGG	1 cut(s)	1643
HphI	GGTGA	3 cut(s)	916, 1495, 1568
Hpy166II	GTNNAC	4 cut(s)	575, 959, 1340, 1471
Hpy188I	TCNGA	9 cut(s)	89, 123, 246, 627, 855, 1330, 1509, 1516, 1603
Hpy8I	GTNNAC	4 cut(s)	575, 959, 1340, 1471
HpyAV	CCTTC	6 cut(s)	186, 454, 632, 850, 1057, 1438
HpyCH4III	ACNGT	2 cut(s)	992, 1239
HpyCH4IV	ACGT	1 cut(s)	492
HpySE526I	ACGT	1 cut(s)	492
Hsp92I	GRCGYC	1 cut(s)	14
Hsp92II	CATG	7 cut(s)	380, 415, 433, 1204, 1287, 1456, 1477
HspAI	GCGC	1 cut(s)	998
Kzo9I	GATC	3 cut(s)	239, 343, 791
LmnI	GCTCC	6 cut(s)	183, 496, 712, 865, 1330, 1492
Lsp1109I	GCAGC	9 cut(s)	486, 523, 526, 569, 752, 1088, 1198, 1279, 1301
LweI	GCATC	3 cut(s)	1009, 1186, 1401
MaeI	CTAG	2 cut(s)	732, 927
MaeII	ACGT	1 cut(s)	492
MaeIII	GTNAC	5 cut(s)	60, 170, 504, 1226, 1483
MalI	GATC	3 cut(s)	241, 345, 793
MboI	GATC	3 cut(s)	239, 343, 791
MfeI	CAATTG	2 cut(s)	1215, 1401
MflI	RGATCY	2 cut(s)	239, 343
MhlI	GDGCHC	3 cut(s)	608, 961, 1576
MlyI	GAGTC	4 cut(s)	125, 133, 908, 1592
MmeI	TCCRAC	3 cut(s)	450, 955, 1308
MroXI	GAANNNNTTC	3 cut(s)	879, 1503, 1539
MseI	TTAA	7 cut(s)	615, 890, 1163, 1173, 1233, 1353, 1358
MspA1I	CMGCKG	2 cut(s)	580, 1292
MspI	CCGG	1 cut(s)	1643
MspR9I	CCNGG	4 cut(s)	181, 288, 299, 1644
MunI	CAATTG	2 cut(s)	1215, 1401
MvaI	CCWGG	3 cut(s)	181, 288, 299
NciI	CCSGG	1 cut(s)	1644
NdeII	GATC	3 cut(s)	239, 343, 791
NlaIII	CATG	7 cut(s)	380, 415, 433, 1204, 1287, 1456, 1477
NlaIV	GGNNCC	2 cut(s)	345, 861
NmuCI	GTSAC	5 cut(s)	60, 170, 504, 1226, 1483
NspI	RCATGY	1 cut(s)	380
PceI	AGGCCT	2 cut(s)	286, 337
PciI	ACATGT	1 cut(s)	376
PdmI	GAANNNNTTC	3 cut(s)	879, 1503, 1539
PfeI	GAWTC	6 cut(s)	923, 982, 1418, 1456, 1499, 1535
PfoI	TCCNGGA	1 cut(s)	179
PleI	GAGTC	4 cut(s)	124, 132, 908, 1592
PpsI	GAGTC	4 cut(s)	124, 132, 908, 1592
PscI	ACATGT	1 cut(s)	376
Psp6I	CCWGG	3 cut(s)	179, 286, 297
PspGI	CCWGG	3 cut(s)	179, 286, 297
PspN4I	GGNNCC	2 cut(s)	345, 861
PspPI	GGNCC	1 cut(s)	755
PstI	CTGCAG	1 cut(s)	504
PsuI	RGATCY	2 cut(s)	239, 343
PvuII	CAGCTG	1 cut(s)	1292
RsaI	GTAC	2 cut(s)	599, 1641
RsaNI	GTAC	2 cut(s)	598, 1640
SaqAI	TTAA	7 cut(s)	615, 890, 1163, 1173, 1233, 1353, 1358
Sau3AI	GATC	3 cut(s)	239, 343, 791
Sau96I	GGNCC	1 cut(s)	755
SchI	GAGTC	4 cut(s)	125, 133, 908, 1592
ScrFI	CCNGG	4 cut(s)	181, 288, 299, 1644
SduI	GDGCHC	3 cut(s)	608, 961, 1576
SfaNI	GCATC	3 cut(s)	1009, 1186, 1401
SfcI	CTRYAG	1 cut(s)	500
SfiI	GGCCNNNNNGGCC	1 cut(s)	334
SmlI	CTYRAG	1 cut(s)	1662
SmoI	CTYRAG	1 cut(s)	1662
SseBI	AGGCCT	2 cut(s)	286, 337
SsiI	CCGC	5 cut(s)	329, 341, 580, 767, 776
SspMI	CTAG	2 cut(s)	732, 927
StuI	AGGCCT	2 cut(s)	286, 337
StyD4I	CCNGG	4 cut(s)	179, 286, 297, 1642
StyI	CCWWGG	3 cut(s)	128, 323, 1140
TaaI	ACNGT	2 cut(s)	992, 1239
TaiI	ACGT	1 cut(s)	495
TaqI	TCGA	1 cut(s)	790
TauI	GCSGC	1 cut(s)	331
TfiI	GAWTC	6 cut(s)	923, 982, 1418, 1456, 1499, 1535
Tru1I	TTAA	7 cut(s)	615, 890, 1163, 1173, 1233, 1353, 1358
Tru9I	TTAA	7 cut(s)	615, 890, 1163, 1173, 1233, 1353, 1358
TscAI	CASTG	4 cut(s)	529, 834, 850, 1279
TseFI	GTSAC	5 cut(s)	60, 170, 504, 1226, 1483
TseI	GCWGC	9 cut(s)	499, 536, 539, 557, 740, 1076, 1211, 1289, 1292
Tsp45I	GTSAC	5 cut(s)	60, 170, 504, 1226, 1483
TspDTI	ATGAA	7 cut(s)	17, 378, 446, 1033, 1164, 1469, 1490
TspRI	CASTG	4 cut(s)	529, 834, 850, 1279
VneI	GTGCAC	1 cut(s)	957
XapI	RAATTY	6 cut(s)	433, 611, 875, 1106, 1395, 1510
XbaI	TCTAGA	1 cut(s)	926
XceI	RCATGY	1 cut(s)	380
XmiI	GTMKAC	1 cut(s)	1339
XmnI	GAANNNNTTC	3 cut(s)	879, 1503, 1539
XspI	CTAG	2 cut(s)	732, 927

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.